Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003219

Physical Location & Seq

Genomic Coordinates Reverse (-)

32325251 .. 32333329

Gene Structure 8079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0304500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGGTTTAGCGCTGAGAAGCAACAGCGCAAGCATGACATATTATATGTCCACCACCCACTCACACTCTCCTCTCTCATTCCACTCCTGCTCTCTCCCACACCGACACCGCTTCAACGTTCAATCAATGGCGGTCAAAAGGGTCCGCTCTGAGCTCCAAGTAAAAGTCAACGGCTCTCTCTCCGCTGCTGACTCCGACCAACTCTTCCTCGACCGCCAAAAAGCACTGGAGGCGGCCATGAATGATATCAATAGCTCATTCGGCAAGGGAAGTGTTACAAGACTAGGAAGCGCTGGTGGAGCTTTGGTTGAAACTTTCCCCAGTGGTTGCTTGACATTGGACCTTGCCTTAGGTGGTGGCCTCCCAAAAGGGAGAATTGTAGAGATATTTGGACCAGAAAGTAGTGGAAAGACAACTCTAGCACTCCATGCAATCGCAGAGGTGCAGAGGCTTGGAGGAAATGCTATGCTTGTTGATGCAGAACATGCCTTTGATCCAGCATATTCAAAAGCATTGGGAGTAGATGTAGAAAATCTGATTGTCTGCCAGCCTGATCATGGCGAAATGGCACTTGAGATTGCAGATCGTATGTGCAGATCTGGTGCCATTGATCTTATCTGTGTCGATTCTGTTTCGGCTCTCACTCCACGAGCAGAAATTGAAGGTGAGATCGGGATGCAACAAATGGGTTTGCAAGCACGCCTTATGAGCCAAGCTTTGCGCAAAATGTCAGGAAATGCATCTAAAGCTGGATGTACTCTCATATTCTTGAATCAAATAAGATATAAGATTGGTGTGTATTATGGGAATCCAGAAGTGACATCTGGAGGAATTGCATTAAAGTTCTTTGCCTCAGTTCGCCTGGAAATACGTTCTACAGGGAAAATAAAATCTGTAAAGGGAGACGAGGAAATTGGGGTTCGGGTCCGTGTACGAGTGCAAAAGAGTAAGGTTTCGAGGCCATACAAACAAGCTGAATTTGAAATTGTGTTTGGAGAGGGAGTAAGTAAATTGGGTTGCATTTTGGATTGTGCTGAAATGATGGATGTAGTAGTGAAGAAGGGCTCTTGGTATAGCTATGGGGACCACAGGTTGGGACAAGGAAGAGATAAATCATTGCAGTACTTGAGAGAGAACCCTGTTCTTCTCGATGAGATAGAGAAGATAGTTCGCTCCACAATGACAGATGCAACTGGACAGGTAGGCTCATTGCACACAAGGAACTTGCCAGTAACACATCAGGATGAAGATGATTTTGAAGATGTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

423

Amino Acids

45.99

Weight (kDa)

6.84

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	74 - 336	7.3e-115	RecA N-terminal domain
Rad51	PF08423	108 - 292	3.9e-07	Rad51
RecA_C	PF21096	339 - 394	6.3e-22	RecA C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41945 AT2G41945 AT2G41945
fragaria_vesca	FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750
malus_domestica	MD03G1221500.v1.1 MD11G1239000.v1.1
prunus_persica	Prupe.7G082900_v2.0.a1 Prupe.7G082900_v2.0.a1
pyrus_communis	pycom11g21050
rosa_chinensis	RchiOBHm_Chr3g0479091
rosa_laevigata	RLG00000023608
rosa_multiflora	Rmu_sc0005645.1_g000017 Rmu_sc0005992.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402740
rosa_rugosa	Rorug03G0170500 Rorug03G0170600 Rorug03G0170700 Rorug03G0170700 Rorug03G0170800 Rorug03G0170900 Rorug03G0304400 Rorug03G0304500 Rorug03G0304600 Rorug03G0304700
rosa_samantha	Rh3AG221800 Rh3BG254300 Rh3DG246500 Rh4AG008600 Rh4CG009300 Rh4CG009700 Rh4CG009800
rosa_wichuraiana	Rw3G019910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	722
AccB1I	GGYRCC	1 cut(s)	602
AccB7I	CCANNNNNTGG	1 cut(s)	1093
AccBSI	CCGCTC	1 cut(s)	147
AciI	CCGC	6 cut(s)	109, 131, 145, 183, 214, 233
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	1 cut(s)	488
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	977
AfaI	GTAC	3 cut(s)	757, 933, 1124
AfeI	AGCGCT	2 cut(s)	12, 292
AfiI	CCNNNNNNNGG	2 cut(s)	557, 1093
AgsI	TTSAA	8 cut(s)	115, 122, 311, 507, 662, 772, 983, 1259
AjnI	CCWGG	1 cut(s)	861
AjuI	GAANNNNNNNTTGG	2 cut(s)	975, 1007
AluBI	AGCT	7 cut(s)	154, 255, 302, 716, 749, 974, 1077
AluI	AGCT	7 cut(s)	154, 255, 302, 716, 749, 974, 1077
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	897
AlwI	GGATC	1 cut(s)	488
Aor51HI	AGCGCT	2 cut(s)	12, 292
AoxI	GGCC	3 cut(s)	234, 358, 959
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	977
AspLEI	GCGC	4 cut(s)	13, 29, 293, 723
AspS9I	GGNCC	5 cut(s)	142, 340, 392, 925, 1084
AsuHPI	GGTGA	1 cut(s)	677
AvaII	GGWCC	5 cut(s)	142, 340, 392, 925, 1084
AxyI	CCTNAGG	1 cut(s)	349
BanI	GGYRCC	1 cut(s)	602
BanII	GRGCYC	2 cut(s)	156, 1067
BauI	CACGAG	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	1036
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	863
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	897
BfaI	CTAG	2 cut(s)	284, 419
BfmI	CTRYAG	1 cut(s)	876
BfoI	RGCGCY	2 cut(s)	14, 294
BglII	AGATCT	1 cut(s)	596
BisI	GCNGC	2 cut(s)	186, 234
BlsI	GCNGC	2 cut(s)	187, 235
BmcAI	AGTACT	1 cut(s)	1124
Bme1390I	CCNGG	1 cut(s)	863
Bme18I	GGWCC	5 cut(s)	142, 340, 392, 925, 1084
BmgT120I	GGNCC	5 cut(s)	142, 340, 392, 925, 1084
BmiI	GGNNCC	4 cut(s)	143, 604, 926, 1085
BmrFI	CCNGG	1 cut(s)	863
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	4 cut(s)	466, 666, 749, 1177
BmuI	ACTGGG	1 cut(s)	315
BpmI	CTGGAG	2 cut(s)	248, 846
BpuEI	CTTGAG	2 cut(s)	593, 1147
BsaXI	ACNNNNNCTCC	6 cut(s)	291, 321, 510, 540, 987, 1017
Bsc4I	CCNNNNNNNGG	2 cut(s)	557, 1093
Bse1I	ACTGG	4 cut(s)	231, 321, 1198, 1229
Bse21I	CCTNAGG	1 cut(s)	349
Bse3DI	GCAATG	2 cut(s)	1115, 1208
BseBI	CCWGG	1 cut(s)	863
BseGI	GGATG	4 cut(s)	681, 758, 1051, 1249
BseLI	CCNNNNNNNGG	2 cut(s)	557, 1093
BseMI	GCAATG	2 cut(s)	1115, 1208
BseMII	CTCAG	3 cut(s)	5, 141, 867
BseNI	ACTGG	4 cut(s)	231, 321, 1198, 1229
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	172
BsgI	GTGCAG	2 cut(s)	464, 613
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	3 cut(s)	236, 360, 961
BshNI	GGYRCC	1 cut(s)	602
BsiEI	CGRYCG	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	156
BslFI	GGGAC	2 cut(s)	1097, 1110
BslI	CCNNNNNNNGG	2 cut(s)	557, 1093
BsmAI	GTCTC	1 cut(s)	897
BsmBI	CGTCTC	1 cut(s)	897
BsmFI	GGGAC	2 cut(s)	1097, 1110
BsnI	GGCC	3 cut(s)	236, 360, 961
Bsp1286I	GDGCHC	2 cut(s)	156, 1067
Bsp143I	GATC	6 cut(s)	493, 553, 583, 596, 610, 669
BspACI	CCGC	6 cut(s)	109, 131, 145, 183, 214, 233
BspANI	GGCC	3 cut(s)	236, 360, 961
BspCNI	CTCAG	3 cut(s)	6, 142, 866
BspLI	GGNNCC	4 cut(s)	143, 604, 926, 1085
BspPI	GGATC	1 cut(s)	488
BspT107I	GGYRCC	1 cut(s)	602
BsrBI	CCGCTC	1 cut(s)	147
BsrDI	GCAATG	2 cut(s)	1115, 1208
BsrI	ACTGG	4 cut(s)	231, 321, 1198, 1229
BssMI	GATC	6 cut(s)	493, 553, 583, 596, 610, 669
BssSI	CACGAG	1 cut(s)	648
Bst2BI	CACGAG	1 cut(s)	648
Bst2UI	CCWGG	1 cut(s)	863
Bst6I	CTCTTC	2 cut(s)	209, 1099
BstAPI	GCANNNNNTGC	2 cut(s)	428, 485
BstC8I	GCNNGC	4 cut(s)	31, 548, 696, 700
BstDEI	CTNAG	4 cut(s)	14, 150, 349, 853
BstF5I	GGATG	4 cut(s)	681, 758, 1051, 1249
BstH2I	RGCGCY	2 cut(s)	14, 294
BstHHI	GCGC	4 cut(s)	13, 29, 293, 723
BstKTI	GATC	6 cut(s)	496, 556, 586, 599, 613, 672
BstMAI	GTCTC	1 cut(s)	897
BstMBI	GATC	6 cut(s)	493, 553, 583, 596, 610, 669
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	7 cut(s)	230, 261, 299, 428, 485, 708, 746
BstNI	CCWGG	1 cut(s)	863
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	861
BstSFI	CTRYAG	1 cut(s)	876
BstV1I	GCAGC	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
Bsu36I	CCTNAGG	1 cut(s)	349
BsuRI	GGCC	3 cut(s)	236, 360, 961
BtsCI	GGATG	4 cut(s)	681, 758, 1051, 1249
BtsIMutI	CAGTG	2 cut(s)	224, 328
Cac8I	GCNNGC	4 cut(s)	31, 548, 696, 700
CfoI	GCGC	4 cut(s)	13, 29, 293, 723
Cfr13I	GGNCC	5 cut(s)	142, 340, 392, 925, 1084
Csp6I	GTAC	3 cut(s)	756, 932, 1123
CviAII	CATG	5 cut(s)	34, 238, 428, 485, 557
CviQI	GTAC	3 cut(s)	756, 932, 1123
DdeI	CTNAG	4 cut(s)	14, 150, 349, 853
DpnI	GATC	6 cut(s)	495, 555, 585, 598, 612, 671
DpnII	GATC	6 cut(s)	493, 553, 583, 596, 610, 669
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	2 cut(s)	209, 1099
EarI	CTCTTC	2 cut(s)	209, 1099
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	2 cut(s)	156, 1067
Eco32I	GATATC	1 cut(s)	247
Eco47I	GGWCC	5 cut(s)	142, 340, 392, 925, 1084
Eco47III	AGCGCT	2 cut(s)	12, 292
Eco53kI	GAGCTC	1 cut(s)	154
Eco81I	CCTNAGG	1 cut(s)	349
EcoICRI	GAGCTC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	861
EcoRV	GATATC	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	742
EcoT38I	GRGCYC	2 cut(s)	156, 1067
Esp3I	CGTCTC	1 cut(s)	897
FaeI	CATG	5 cut(s)	37, 241, 431, 488, 560
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FaqI	GGGAC	2 cut(s)	1097, 1110
FatI	CATG	5 cut(s)	33, 237, 427, 484, 556
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	2 cut(s)	186, 234
FokI	GGATG	4 cut(s)	688, 765, 1058, 1256
FriOI	GRGCYC	2 cut(s)	156, 1067
Fsp4HI	GCNGC	2 cut(s)	186, 234
FspBI	CTAG	2 cut(s)	284, 419
FspI	TGCGCA	1 cut(s)	722
GlaI	GCGC	4 cut(s)	12, 28, 292, 722
GluI	GCNGC	2 cut(s)	186, 234
GsuI	CTGGAG	2 cut(s)	248, 846
HaeII	RGCGCY	2 cut(s)	14, 294
HaeIII	GGCC	3 cut(s)	236, 360, 961
HhaI	GCGC	4 cut(s)	13, 29, 293, 723
Hin1II	CATG	5 cut(s)	37, 241, 431, 488, 560
Hin6I	GCGC	4 cut(s)	11, 27, 291, 721
HinP1I	GCGC	4 cut(s)	11, 27, 291, 721
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	714
HinfI	GANTC	4 cut(s)	191, 626, 772, 808
HphI	GGTGA	1 cut(s)	677
Hpy166II	GTNNAC	3 cut(s)	51, 169, 932
Hpy188I	TCNGA	3 cut(s)	151, 196, 537
Hpy188III	TCNNGA	7 cut(s)	673, 732, 769, 812, 825, 1148, 1241
Hpy8I	GTNNAC	3 cut(s)	51, 169, 932
HpyAV	CCTTC	2 cut(s)	656, 1054
HpyCH4IV	ACGT	2 cut(s)	117, 871
HpyF10VI	GCNNNNNNNGC	7 cut(s)	230, 261, 299, 428, 485, 708, 746
HpyF3I	CTNAG	4 cut(s)	14, 150, 349, 853
HpySE526I	ACGT	2 cut(s)	117, 871
Hsp92II	CATG	5 cut(s)	37, 241, 431, 488, 560
HspAI	GCGC	4 cut(s)	11, 27, 291, 721
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	6 cut(s)	493, 553, 583, 596, 610, 669
LmnI	GCTCC	3 cut(s)	159, 299, 1178
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	4 cut(s)	466, 666, 749, 1177
MaeI	CTAG	2 cut(s)	284, 419
MaeII	ACGT	2 cut(s)	117, 871
MaeIII	GTNAC	3 cut(s)	274, 817, 1231
MalI	GATC	6 cut(s)	495, 555, 585, 598, 612, 671
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	6 cut(s)	493, 553, 583, 596, 610, 669
MboII	GAAGA	7 cut(s)	196, 1069, 1116, 1136, 1174, 1259, 1271
MflI	RGATCY	1 cut(s)	596
MhlI	GDGCHC	2 cut(s)	156, 1067
MluCI	AATT	7 cut(s)	375, 657, 831, 912, 977, 984, 1010
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	219
Mph1103I	ATGCAT	1 cut(s)	742
MseI	TTAA	1 cut(s)	839
MslI	CAYNNNNRTG	1 cut(s)	1242
MspA1I	CMGCKG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	863
MvaI	CCWGG	1 cut(s)	863
MwoI	GCNNNNNNNGC	7 cut(s)	230, 261, 299, 428, 485, 708, 746
NdeII	GATC	6 cut(s)	493, 553, 583, 596, 610, 669
NlaIII	CATG	5 cut(s)	37, 241, 431, 488, 560
NlaIV	GGNNCC	4 cut(s)	143, 604, 926, 1085
NmuCI	GTSAC	1 cut(s)	817
NsbI	TGCGCA	1 cut(s)	722
NsiI	ATGCAT	1 cut(s)	742
NspI	RCATGY	1 cut(s)	488
PfeI	GAWTC	3 cut(s)	626, 772, 808
PflMI	CCANNNNNTGG	1 cut(s)	1093
PkrI	GCNGC	2 cut(s)	187, 235
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
Psp124BI	GAGCTC	1 cut(s)	156
Psp1406I	AACGTT	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	861
PspGI	CCWGG	1 cut(s)	861
PspN4I	GGNNCC	4 cut(s)	143, 604, 926, 1085
PspPI	GGNCC	5 cut(s)	142, 340, 392, 925, 1084
PsuI	RGATCY	1 cut(s)	596
RsaI	GTAC	3 cut(s)	757, 933, 1124
RsaNI	GTAC	3 cut(s)	756, 932, 1123
RseI	CAYNNNNRTG	1 cut(s)	1242
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	839
SatI	GCNGC	2 cut(s)	186, 234
Sau3AI	GATC	6 cut(s)	493, 553, 583, 596, 610, 669
Sau96I	GGNCC	5 cut(s)	142, 340, 392, 925, 1084
ScaI	AGTACT	1 cut(s)	1124
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	863
SduI	GDGCHC	2 cut(s)	156, 1067
SfaNI	GCATC	4 cut(s)	466, 666, 749, 1177
SfcI	CTRYAG	1 cut(s)	876
SinI	GGWCC	5 cut(s)	142, 340, 392, 925, 1084
SmiMI	CAYNNNNRTG	1 cut(s)	1242
SmlI	CTYRAG	2 cut(s)	572, 1126
SmoI	CTYRAG	2 cut(s)	572, 1126
Sse9I	AATT	7 cut(s)	375, 657, 831, 912, 977, 984, 1010
SsiI	CCGC	6 cut(s)	109, 131, 145, 183, 214, 233
SspMI	CTAG	2 cut(s)	284, 419
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	861
TaiI	ACGT	2 cut(s)	120, 874
TaqI	TCGA	4 cut(s)	210, 624, 956, 1149
TasI	AATT	7 cut(s)	375, 657, 831, 912, 977, 984, 1010
TatI	WGTACW	2 cut(s)	755, 1122
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	3 cut(s)	626, 772, 808
Tru1I	TTAA	1 cut(s)	839
Tru9I	TTAA	1 cut(s)	839
TscAI	CASTG	2 cut(s)	231, 328
TseFI	GTSAC	1 cut(s)	817
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	817
TspDTI	ATGAA	2 cut(s)	254, 1260
TspGWI	ACGGA	1 cut(s)	917
TspRI	CASTG	2 cut(s)	231, 328
Van91I	CCANNNNNTGG	1 cut(s)	1093
VpaK11BI	GGWCC	5 cut(s)	142, 340, 392, 925, 1084
XapI	RAATTY	1 cut(s)	977
XceI	RCATGY	1 cut(s)	488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	554
XspI	CTAG	2 cut(s)	284, 419
ZrmI	AGTACT	1 cut(s)	1124
Zsp2I	ATGCAT	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.