Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003219

Physical Location & Seq

Genomic Coordinates Forward (+)

24148688 .. 24153541

Gene Structure 4854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG246500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGGACGAGAGAGGTGTATGAACAGAAGCTAAGGAGTGGGAATCTGCATCATGATCCTACCATGAAACCAGGCCTCGGCACCCCTCGCTGCCCGCGCTGTCTCTCTCTCCTTGACCATGATTCGGGAAAGGGTGAATGGACCATCACTCCTGTTCTTCATGACGCCACTGCTGTTGCTGGCTCAGGTATTGGTGGAATGCTTAGTGCAATTCATGGCTTCAATACAGGGATCCCGTACCTTCAGAATCGCTTAAAAGGACCAAAGTGGCTTCCTTTCTTAGTTGGGCTTCCTCCTCTGCTACTCTTTTCGGGTGCCAGTGCTGCATTTGGAGGTTATGCACTTCCAAAAGACTCATACTTCCCGCTCTCAGCAAGAAAGACTCGGATGATTTCTTGCAGATTAGAAGTTCCTATATGTAGCAAAGCAGGCCCACCTTTGAAGTTGTTGAGGCATCATAAAACAACGTTCAGTTCTGATCAGTGGGCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

17.79

Weight (kDa)

9.69

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41945 AT2G41945 AT2G41945
fragaria_vesca	FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750
malus_domestica	MD03G1221500.v1.1 MD11G1239000.v1.1
prunus_persica	Prupe.7G082900_v2.0.a1 Prupe.7G082900_v2.0.a1
pyrus_communis	pycom11g21050
rosa_chinensis	RchiOBHm_Chr3g0479091
rosa_laevigata	RLG00000023608
rosa_multiflora	Rmu_sc0005645.1_g000017 Rmu_sc0005992.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402740
rosa_rugosa	Rorug03G0170500 Rorug03G0170600 Rorug03G0170700 Rorug03G0170700 Rorug03G0170800 Rorug03G0170900 Rorug03G0304400 Rorug03G0304500 Rorug03G0304600 Rorug03G0304700
rosa_samantha	Rh3AG221800 Rh3BG254300 Rh3DG246500 Rh4AG008600 Rh4CG009300 Rh4CG009700 Rh4CG009800
rosa_wichuraiana	Rw3G019910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	80, 314
AccBSI	CCGCTC	1 cut(s)	367
AccII	CGCG	1 cut(s)	97
AciI	CCGC	2 cut(s)	95, 365
AclI	AACGTT	1 cut(s)	467
AclWI	GGATC	3 cut(s)	50, 226, 239
AcuI	CTGAAG	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	77, 124
AgsI	TTSAA	2 cut(s)	223, 442
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	3 cut(s)	50, 226, 239
AoxI	GGCC	2 cut(s)	73, 430
ApeKI	GCWGC	2 cut(s)	90, 323
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	3 cut(s)	141, 260, 431
AsuHPI	GGTGA	1 cut(s)	146
AvaII	GGWCC	2 cut(s)	141, 260
BamHI	GGATCC	1 cut(s)	231
BanI	GGYRCC	2 cut(s)	80, 314
BbvI	GCAGC	2 cut(s)	77, 310
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	72
BclI	TGATCA	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	107
BisI	GCNGC	2 cut(s)	91, 324
BlsI	GCNGC	2 cut(s)	92, 325
Bme1390I	CCNGG	1 cut(s)	72
Bme18I	GGWCC	2 cut(s)	141, 260
BmgT120I	GGNCC	3 cut(s)	141, 260, 431
BmiI	GGNNCC	3 cut(s)	82, 233, 316
BmrFI	CCNGG	1 cut(s)	72
BmsI	GCATC	2 cut(s)	58, 463
Bpu10I	CCTNAGC	2 cut(s)	32, 184
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 124
Bse1I	ACTGG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	1 cut(s)	393
BseLI	CCNNNNNNNGG	2 cut(s)	77, 124
BseMII	CTCAG	2 cut(s)	198, 384
BseNI	ACTGG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	285
BseXI	GCAGC	2 cut(s)	77, 310
Bsh1236I	CGCG	1 cut(s)	97
BshFI	GGCC	2 cut(s)	75, 432
BshNI	GGYRCC	2 cut(s)	80, 314
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	77, 124
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	204
BsnI	GGCC	2 cut(s)	75, 432
Bsp143I	GATC	3 cut(s)	55, 231, 478
BspACI	CCGC	2 cut(s)	95, 365
BspANI	GGCC	2 cut(s)	75, 432
BspCNI	CTCAG	2 cut(s)	197, 383
BspFNI	CGCG	1 cut(s)	97
BspHI	TCATGA	2 cut(s)	52, 160
BspLI	GGNNCC	3 cut(s)	82, 233, 316
BspPI	GGATC	3 cut(s)	50, 226, 239
BspT107I	GGYRCC	2 cut(s)	80, 314
BsrBI	CCGCTC	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	3 cut(s)	55, 231, 478
BssNI	GRCGYC	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	72
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	3 cut(s)	95, 181, 430
BstDEI	CTNAG	5 cut(s)	32, 184, 203, 280, 370
BstF5I	GGATG	1 cut(s)	393
BstFNI	CGCG	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	3 cut(s)	58, 234, 481
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	3 cut(s)	55, 231, 478
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 96, 323, 429
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	70
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	2 cut(s)	77, 310
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	75, 432
BtsCI	GGATG	1 cut(s)	393
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	3 cut(s)	168, 325, 488
Cac8I	GCNNGC	3 cut(s)	95, 181, 430
CciI	TCATGA	2 cut(s)	52, 160
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	3 cut(s)	141, 260, 431
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	238
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	5 cut(s)	53, 64, 119, 161, 215
CviJI	RGCY	7 cut(s)	31, 75, 183, 219, 271, 289, 432
CviKI_1	RGCY	7 cut(s)	31, 75, 183, 219, 271, 289, 432
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	5 cut(s)	32, 184, 203, 280, 370
DpnI	GATC	3 cut(s)	57, 233, 480
DpnII	GATC	3 cut(s)	55, 231, 478
Eco147I	AGGCCT	1 cut(s)	75
Eco47I	GGWCC	2 cut(s)	141, 260
Eco57I	CTGAAG	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	70
FaeI	CATG	5 cut(s)	56, 67, 122, 164, 218
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	5 cut(s)	52, 63, 118, 160, 214
FauI	CCCGC	2 cut(s)	102, 372
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	2 cut(s)	91, 324
FokI	GGATG	1 cut(s)	400
Fsp4HI	GCNGC	2 cut(s)	91, 324
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	2 cut(s)	91, 324
HaeIII	GGCC	2 cut(s)	75, 432
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	99
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	5 cut(s)	56, 67, 122, 164, 218
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HinfI	GANTC	5 cut(s)	43, 122, 247, 353, 382
HphI	GGTGA	1 cut(s)	146
Hpy188I	TCNGA	3 cut(s)	246, 387, 478
Hpy188III	TCNNGA	3 cut(s)	53, 126, 161
HpyAV	CCTTC	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	5 cut(s)	49, 209, 326, 341, 399
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 96, 323, 429
HpyF3I	CTNAG	5 cut(s)	32, 184, 203, 280, 370
HpySE526I	ACGT	1 cut(s)	467
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	5 cut(s)	56, 67, 122, 164, 218
HspAI	GCGC	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	3 cut(s)	55, 231, 478
LpnPI	CCDG	8 cut(s)	57, 84, 165, 165, 171, 213, 331, 414
Lsp1109I	GCAGC	2 cut(s)	77, 310
LweI	GCATC	2 cut(s)	58, 463
MaeII	ACGT	1 cut(s)	467
MalI	GATC	3 cut(s)	57, 233, 480
MbiI	CCGCTC	1 cut(s)	367
MboI	GATC	3 cut(s)	55, 231, 478
MboII	GAAGA	1 cut(s)	149
MflI	RGATCY	1 cut(s)	231
MluCI	AATT	1 cut(s)	210
MlyI	GAGTC	2 cut(s)	347, 376
MnlI	CCTC	7 cut(s)	7, 86, 96, 303, 306, 326, 444
MseI	TTAA	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	4 cut(s)	87, 96, 323, 429
NdeII	GATC	3 cut(s)	55, 231, 478
NlaIII	CATG	5 cut(s)	56, 67, 122, 164, 218
NlaIV	GGNNCC	3 cut(s)	82, 233, 316
NmeAIII	GCCGAG	1 cut(s)	57
PagI	TCATGA	2 cut(s)	52, 160
PceI	AGGCCT	1 cut(s)	75
PctI	GAATGC	1 cut(s)	204
PfeI	GAWTC	3 cut(s)	43, 122, 247
PkrI	GCNGC	2 cut(s)	92, 325
PleI	GAGTC	2 cut(s)	347, 376
PpsI	GAGTC	2 cut(s)	347, 376
Psp1406I	AACGTT	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	3 cut(s)	82, 233, 316
PspPI	GGNCC	3 cut(s)	141, 260, 431
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	2 cut(s)	91, 324
Sau3AI	GATC	3 cut(s)	55, 231, 478
Sau96I	GGNCC	3 cut(s)	141, 260, 431
SchI	GAGTC	2 cut(s)	347, 376
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	7 cut(s)	18, 33, 190, 243, 337, 439, 470
SfaNI	GCATC	2 cut(s)	58, 463
SinI	GGWCC	2 cut(s)	141, 260
Sse9I	AATT	1 cut(s)	210
SseBI	AGGCCT	1 cut(s)	75
SsiI	CCGC	2 cut(s)	95, 365
StuI	AGGCCT	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	70
TaiI	ACGT	1 cut(s)	470
TasI	AATT	1 cut(s)	210
TfiI	GAWTC	3 cut(s)	43, 122, 247
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	3 cut(s)	175, 325, 488
TseI	GCWGC	2 cut(s)	90, 323
TspDTI	ATGAA	4 cut(s)	36, 80, 149, 203
TspRI	CASTG	3 cut(s)	175, 325, 488
VpaK11BI	GGWCC	2 cut(s)	141, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.