Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005645.1

Orthogroup ID

OG0003219

Physical Location & Seq

Genomic Coordinates Forward (+)

82773 .. 86537

Gene Structure 3765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005645.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atggggacgagagaggtgtatgaacagaagctaaggagtgggaatctgcatcatgatcctaccatgaaaccaggcctcggcacccctcgctgcccgcgctgtctctctctccttgaccatgattcgggaaaggggatcccgtaccttcagaatcgcttaaaaggaccaaagtggcttcctttcttagttgggcttcctcctctgctactcttttcgggtgccagtgctgcatttggaggttatgcacttccaaagtttgctcaactcacggtgacttcgtattatgccacctcaagtgcctcacattacgggatttcgcttcttactcgacatattgaagagactcatacttcccgctctcagcaagaaagactcggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.89

Weight (kDa)

9.59

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41945 AT2G41945 AT2G41945
fragaria_vesca	FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750
malus_domestica	MD03G1221500.v1.1 MD11G1239000.v1.1
prunus_persica	Prupe.7G082900_v2.0.a1 Prupe.7G082900_v2.0.a1
pyrus_communis	pycom11g21050
rosa_chinensis	RchiOBHm_Chr3g0479091
rosa_laevigata	RLG00000023608
rosa_multiflora	Rmu_sc0005645.1_g000017 Rmu_sc0005992.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402740
rosa_rugosa	Rorug03G0170500 Rorug03G0170600 Rorug03G0170700 Rorug03G0170700 Rorug03G0170800 Rorug03G0170900 Rorug03G0304400 Rorug03G0304500 Rorug03G0304600 Rorug03G0304700
rosa_samantha	Rh3AG221800 Rh3BG254300 Rh3DG246500 Rh4AG008600 Rh4CG009300 Rh4CG009700 Rh4CG009800
rosa_wichuraiana	Rw3G019910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	80, 218
AccBSI	CCGCTC	1 cut(s)	357
AccII	CGCG	1 cut(s)	97
AciI	CCGC	2 cut(s)	95, 355
AclWI	GGATC	3 cut(s)	50, 130, 143
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	77, 124
AgsI	TTSAA	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw26I	GTCTC	2 cut(s)	107, 335
AlwI	GGATC	3 cut(s)	50, 130, 143
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	2 cut(s)	90, 227
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	164
BamHI	GGATCC	1 cut(s)	135
BanI	GGYRCC	2 cut(s)	80, 218
BbvI	GCAGC	2 cut(s)	77, 214
BciT130I	CCWGG	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	107, 335
BisI	GCNGC	2 cut(s)	91, 228
BlsI	GCNGC	2 cut(s)	92, 229
Bme1390I	CCNGG	1 cut(s)	72
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	3 cut(s)	82, 137, 220
BmrFI	CCNGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	58
Bpu10I	CCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	277
BsaJI	CCNNGG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 124
Bse1I	ACTGG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	2 cut(s)	77, 124
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	2 cut(s)	77, 214
Bsh1236I	CGCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	75
BshNI	GGYRCC	2 cut(s)	80, 218
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	77, 124
BsmAI	GTCTC	2 cut(s)	107, 335
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	55, 135
BspACI	CCGC	2 cut(s)	95, 355
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	373
BspFNI	CGCG	1 cut(s)	97
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	3 cut(s)	82, 137, 220
BspPI	GGATC	3 cut(s)	50, 130, 143
BspT107I	GGYRCC	2 cut(s)	80, 218
BsrBI	CCGCTC	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	2 cut(s)	55, 135
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	3 cut(s)	32, 184, 360
BstFNI	CGCG	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	2 cut(s)	58, 138
BstMAI	GTCTC	2 cut(s)	107, 335
BstMBI	GATC	2 cut(s)	55, 135
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 96, 227
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	70
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	2 cut(s)	77, 214
BstX2I	RGATCY	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	95
CciI	TCATGA	1 cut(s)	52
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	3 cut(s)	53, 64, 119
CviJI	RGCY	4 cut(s)	31, 75, 175, 193
CviKI_1	RGCY	4 cut(s)	31, 75, 175, 193
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	3 cut(s)	32, 184, 360
DpnI	GATC	2 cut(s)	57, 137
DpnII	GATC	2 cut(s)	55, 135
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	70
FaeI	CATG	3 cut(s)	56, 67, 122
FaiI	YATR	8 cut(s)	21, 54, 65, 120, 243, 285, 333, 348
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	3 cut(s)	52, 63, 118
FauI	CCCGC	2 cut(s)	102, 362
Fnu4HI	GCNGC	2 cut(s)	91, 228
Fsp4HI	GCNGC	2 cut(s)	91, 228
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	2 cut(s)	91, 228
HaeIII	GGCC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	56, 67, 122
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HinfI	GANTC	5 cut(s)	43, 122, 151, 343, 372
HphI	GGTGA	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	150, 377
Hpy188III	TCNNGA	2 cut(s)	53, 126
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	3 cut(s)	49, 230, 245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 96, 227
HpyF3I	CTNAG	3 cut(s)	32, 184, 360
Hsp92II	CATG	3 cut(s)	56, 67, 122
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	55, 135
LpnPI	CCDG	3 cut(s)	57, 84, 235
Lsp1109I	GCAGC	2 cut(s)	77, 214
LweI	GCATC	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	57, 137
MbiI	CCGCTC	1 cut(s)	357
MboI	GATC	2 cut(s)	55, 135
MboII	GAAGA	1 cut(s)	350
MflI	RGATCY	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	337, 366
MnlI	CCTC	8 cut(s)	7, 86, 96, 207, 210, 230, 301, 310
MseI	TTAA	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	3 cut(s)	87, 96, 227
NdeII	GATC	2 cut(s)	55, 135
NlaIII	CATG	3 cut(s)	56, 67, 122
NlaIV	GGNNCC	3 cut(s)	82, 137, 220
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	271
PagI	TCATGA	1 cut(s)	52
PceI	AGGCCT	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	275
PfeI	GAWTC	3 cut(s)	43, 122, 151
PkrI	GCNGC	2 cut(s)	92, 229
PleI	GAGTC	2 cut(s)	337, 366
PpsI	GAGTC	2 cut(s)	337, 366
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	3 cut(s)	82, 137, 220
PspPI	GGNCC	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	135
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	2 cut(s)	91, 228
Sau3AI	GATC	2 cut(s)	55, 135
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	2 cut(s)	337, 366
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	5 cut(s)	18, 33, 147, 241, 293
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	292
SmoI	CTYRAG	1 cut(s)	292
SseBI	AGGCCT	1 cut(s)	75
SsiI	CCGC	2 cut(s)	95, 355
StuI	AGGCCT	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	70
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	328
TfiI	GAWTC	3 cut(s)	43, 122, 151
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	90, 227
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	36, 80
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.