Rh4CG009800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0003219
Physical Location & Seq
Forward (+)
1663506 .. 1673542
10037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG009800.1

Sequence Viewer

Length: 393 bp
ATGGGGACGAGAGAGGTGTATGAACAGAAGCTAAGGAGTGGGAATCTGCATCATGATCCTACCATGAAACCAGGCCTCGACACCCCTCGCTGCCCGCGCTGTCTCTCTCTCCTTGACCATGATTCGGGAAAGGGTGAATGGACTATCGCTCCTGTTCTTCATGACGCCACTGCTGTTGCTGGCTCAGGTATTGGTGGAATGCTTAATGCAATTCATGGCTTCAATACAGGGATCCCGTACCTTCAGAATCGCTTAAAAGGACCAAAGTGGCTTCCTTTCTTAGTTGGGCTTCCTCCTCTGCTACTCTTTTCGGGTTTTCTACTCTTTTCGGGTGCTAGTGCTGCATTTGGAGGTATGAACCTTGCCCTTTCTCCATGGGTTAAAGTACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

13.95

Weight (kDa)

9.1

Isoelectric Point (pI)

21.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 97
AciI CCGC 1 cut(s) 95
AclWI GGATC 3 cut(s) 50, 226, 239
AcuI CTGAAG 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 2 cut(s) 239, 387
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 1 cut(s) 223
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 3 cut(s) 50, 226, 239
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 2 cut(s) 90, 341
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 146
AvaII GGWCC 1 cut(s) 260
BamHI GGATCC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 77, 328
BciT130I CCWGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 1 cut(s) 336
BisI GCNGC 2 cut(s) 91, 342
BlsI GCNGC 2 cut(s) 92, 343
BmcAI AGTACT 1 cut(s) 387
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 58
Bpu10I CCTNAGC 2 cut(s) 32, 184
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 374
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bsc4I CCNNNNNNNGG 1 cut(s) 124
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 374
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 198
BseRI GAGGAG 1 cut(s) 285
BseXI GCAGC 2 cut(s) 77, 328
Bsh1236I CGCG 1 cut(s) 97
BshFI GGCC 1 cut(s) 75
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 204
BsnI GGCC 1 cut(s) 75
Bsp143I GATC 2 cut(s) 55, 231
Bsp19I CCATGG 1 cut(s) 374
BspACI CCGC 1 cut(s) 95
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 197
BspFNI CGCG 1 cut(s) 97
BspHI TCATGA 2 cut(s) 52, 160
BspLI GGNNCC 1 cut(s) 233
BspPI GGATC 3 cut(s) 50, 226, 239
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 2 cut(s) 55, 231
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 374
Bst2UI CCWGG 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 95, 181
BstDEI CTNAG 3 cut(s) 32, 184, 280
BstDSI CCRYGG 1 cut(s) 374
BstFNI CGCG 1 cut(s) 97
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 2 cut(s) 58, 234
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 2 cut(s) 55, 231
BstMWI GCNNNNNNNGC 2 cut(s) 96, 341
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 2 cut(s) 77, 328
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 374
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 95, 181
CciI TCATGA 2 cut(s) 52, 160
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 260
CseI GACGC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 238, 386
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 6 cut(s) 53, 64, 119, 161, 215, 375
CviJI RGCY 6 cut(s) 31, 75, 183, 219, 271, 289
CviKI_1 RGCY 6 cut(s) 31, 75, 183, 219, 271, 289
CviQI GTAC 2 cut(s) 238, 386
DdeI CTNAG 3 cut(s) 32, 184, 280
DpnI GATC 2 cut(s) 57, 233
DpnII GATC 2 cut(s) 55, 231
Eco130I CCWWGG 1 cut(s) 374
Eco147I AGGCCT 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 374
ErhI CCWWGG 1 cut(s) 374
FaeI CATG 6 cut(s) 56, 67, 122, 164, 218, 378
FaiI YATR 8 cut(s) 21, 54, 65, 120, 162, 216, 356, 376
FaqI GGGAC 1 cut(s) 19
FatI CATG 6 cut(s) 52, 63, 118, 160, 214, 374
FauI CCCGC 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 91, 342
Fsp4HI GCNGC 2 cut(s) 91, 342
FspBI CTAG 1 cut(s) 336
GlaI GCGC 1 cut(s) 98
GluI GCNGC 2 cut(s) 91, 342
HaeIII GGCC 1 cut(s) 75
HgaI GACGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 6 cut(s) 56, 67, 122, 164, 218, 378
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 3 cut(s) 43, 122, 247
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 2 cut(s) 246, 392
Hpy188III TCNNGA 3 cut(s) 53, 126, 161
HpyAV CCTTC 1 cut(s) 251
HpyCH4V TGCA 3 cut(s) 49, 209, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 341
HpyF3I CTNAG 3 cut(s) 32, 184, 280
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 6 cut(s) 56, 67, 122, 164, 218, 378
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 2 cut(s) 55, 231
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 6 cut(s) 57, 84, 165, 165, 171, 213
Lsp1109I GCAGC 2 cut(s) 77, 328
LweI GCATC 1 cut(s) 58
MaeI CTAG 1 cut(s) 336
MalI GATC 2 cut(s) 57, 233
MboI GATC 2 cut(s) 55, 231
MboII GAAGA 1 cut(s) 149
MflI RGATCY 1 cut(s) 231
MluCI AATT 1 cut(s) 210
MnlI CCTC 6 cut(s) 7, 86, 96, 303, 306, 344
MseI TTAA 3 cut(s) 204, 254, 381
MspR9I CCNGG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 204
MvaI CCWGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 96, 341
NcoI CCATGG 1 cut(s) 374
NdeII GATC 2 cut(s) 55, 231
NlaIII CATG 6 cut(s) 56, 67, 122, 164, 218, 378
NlaIV GGNNCC 1 cut(s) 233
PagI TCATGA 2 cut(s) 52, 160
PceI AGGCCT 1 cut(s) 75
PctI GAATGC 1 cut(s) 204
PfeI GAWTC 3 cut(s) 43, 122, 247
PkrI GCNGC 2 cut(s) 92, 343
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 233
PspPI GGNCC 1 cut(s) 260
PsuI RGATCY 1 cut(s) 231
RsaI GTAC 2 cut(s) 239, 387
RsaNI GTAC 2 cut(s) 238, 386
SaqAI TTAA 3 cut(s) 204, 254, 381
SatI GCNGC 2 cut(s) 91, 342
Sau3AI GATC 2 cut(s) 55, 231
Sau96I GGNCC 1 cut(s) 260
ScaI AGTACT 1 cut(s) 387
ScrFI CCNGG 1 cut(s) 72
SetI ASST 6 cut(s) 18, 33, 190, 243, 355, 363
SfaNI GCATC 1 cut(s) 58
SinI GGWCC 1 cut(s) 260
Sse9I AATT 1 cut(s) 210
SseBI AGGCCT 1 cut(s) 75
SsiI CCGC 1 cut(s) 95
SspMI CTAG 1 cut(s) 336
StuI AGGCCT 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 70
StyI CCWWGG 1 cut(s) 374
TaqI TCGA 1 cut(s) 78
TasI AATT 1 cut(s) 210
TatI WGTACW 1 cut(s) 385
TfiI GAWTC 3 cut(s) 43, 122, 247
Tru1I TTAA 3 cut(s) 204, 254, 381
Tru9I TTAA 3 cut(s) 204, 254, 381
TscAI CASTG 1 cut(s) 175
TseI GCWGC 2 cut(s) 90, 341
TspDTI ATGAA 5 cut(s) 36, 80, 149, 203, 371
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 260
XspI CTAG 1 cut(s) 336
ZrmI AGTACT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.