Rmu_sc0005992.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005992.1
OG0003219
Physical Location & Seq
Reverse (-)
1 .. 1519
1519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005992.1_g000001.1.cds

Sequence Viewer

Length: 177 bp
atggggacgagagaggtgtatgaacagaagctaaggagtgggaatctgcatcatgatcctaccatgaaaccaggcctcggcacccctcgctgcccgcgctgtctctctctccttgaccatgattcgggaaagggtgaatggaccatcactcctgttcttcatgacgccactgctgtt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.52

Weight (kDa)

6.89

Isoelectric Point (pI)

15.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 80
AccII CGCG 1 cut(s) 97
AciI CCGC 1 cut(s) 95
AclWI GGATC 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 165
AfiI CCNNNNNNNGG 2 cut(s) 77, 124
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 1 cut(s) 50
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 90
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 146
AvaII GGWCC 1 cut(s) 141
BanI GGYRCC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 77
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 107
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 124
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 76
BseLI CCNNNNNNNGG 2 cut(s) 77, 124
BseXI GCAGC 1 cut(s) 77
Bsh1236I CGCG 1 cut(s) 97
BshFI GGCC 1 cut(s) 75
BshNI GGYRCC 1 cut(s) 80
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 2 cut(s) 77, 124
BsmAI GTCTC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 1 cut(s) 95
BspANI GGCC 1 cut(s) 75
BspFNI CGCG 1 cut(s) 97
BspHI TCATGA 2 cut(s) 52, 160
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 1 cut(s) 55
BssNI GRCGYC 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 32
BstFNI CGCG 1 cut(s) 97
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 87, 96
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 77
BsuRI GGCC 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 95
CciI TCATGA 2 cut(s) 52, 160
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 141
CviAII CATG 4 cut(s) 53, 64, 119, 161
CviJI RGCY 2 cut(s) 31, 75
CviKI_1 RGCY 2 cut(s) 31, 75
DdeI CTNAG 1 cut(s) 32
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eco147I AGGCCT 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 70
FaeI CATG 4 cut(s) 56, 67, 122, 164
FaiI YATR 5 cut(s) 21, 54, 65, 120, 162
FaqI GGGAC 1 cut(s) 19
FatI CATG 4 cut(s) 52, 63, 118, 160
FauI CCCGC 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 91
GlaI GCGC 1 cut(s) 98
GluI GCNGC 1 cut(s) 91
HaeIII GGCC 1 cut(s) 75
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 4 cut(s) 56, 67, 122, 164
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 2 cut(s) 43, 122
HphI GGTGA 1 cut(s) 146
Hpy188III TCNNGA 3 cut(s) 53, 126, 161
HpyCH4V TGCA 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 96
HpyF3I CTNAG 1 cut(s) 32
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 4 cut(s) 56, 67, 122, 164
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 3 cut(s) 57, 84, 165
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 58
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 1 cut(s) 149
MnlI CCTC 3 cut(s) 7, 86, 96
MspR9I CCNGG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 87, 96
NdeII GATC 1 cut(s) 55
NlaIII CATG 4 cut(s) 56, 67, 122, 164
NlaIV GGNNCC 1 cut(s) 82
NmeAIII GCCGAG 1 cut(s) 57
PagI TCATGA 2 cut(s) 52, 160
PceI AGGCCT 1 cut(s) 75
PfeI GAWTC 2 cut(s) 43, 122
PkrI GCNGC 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 141
SatI GCNGC 1 cut(s) 91
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 72
SetI ASST 2 cut(s) 18, 33
SfaNI GCATC 1 cut(s) 58
SinI GGWCC 1 cut(s) 141
SseBI AGGCCT 1 cut(s) 75
SsiI CCGC 1 cut(s) 95
StuI AGGCCT 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 70
TfiI GAWTC 2 cut(s) 43, 122
TscAI CASTG 1 cut(s) 175
TseI GCWGC 1 cut(s) 90
TspDTI ATGAA 3 cut(s) 36, 80, 149
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.