Rh4CG009700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0003219
Physical Location & Seq
Reverse (-)
1660983 .. 1661928
946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG009700.1

Sequence Viewer

Length: 204 bp
ATGGGGACGAGAGAGGTGTATGAACAAAAGCTAAGGAGTGGGAATCTGCATCATGATCCTACCATGAAACCAGGCCTCGGCACCACTCGCTGTCCGCGCTGTCTCTCTCTCCTTGACCAGGATTCGGGAAAGGGTGAATGGACTATCACTCATGTTCTTCATGACGCCACTGCTGTTGGATCCCGTACCTTCAGAATCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.45

Weight (kDa)

8.8

Isoelectric Point (pI)

19.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 80
AccII CGCG 1 cut(s) 97
AciI CCGC 1 cut(s) 95
AclWI GGATC 3 cut(s) 50, 174, 187
AcuI CTGAAG 1 cut(s) 175
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 3 cut(s) 77, 118, 124
AjnI CCWGG 2 cut(s) 70, 117
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 3 cut(s) 50, 174, 187
AoxI GGCC 1 cut(s) 73
AspLEI GCGC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 146
BamHI GGATCC 1 cut(s) 179
BanI GGYRCC 1 cut(s) 80
BciT130I CCWGG 2 cut(s) 72, 119
BcoDI GTCTC 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 72, 119
BmiI GGNNCC 2 cut(s) 82, 181
BmrFI CCNGG 2 cut(s) 72, 119
BmsI GCATC 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 118, 124
BseBI CCWGG 2 cut(s) 72, 119
BseDI CCNNGG 1 cut(s) 76
BseLI CCNNNNNNNGG 3 cut(s) 77, 118, 124
Bsh1236I CGCG 1 cut(s) 97
BshFI GGCC 1 cut(s) 75
BshNI GGYRCC 1 cut(s) 80
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 3 cut(s) 77, 118, 124
BsmAI GTCTC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 1 cut(s) 75
Bsp143I GATC 2 cut(s) 55, 179
BspACI CCGC 1 cut(s) 95
BspANI GGCC 1 cut(s) 75
BspFNI CGCG 1 cut(s) 97
BspHI TCATGA 2 cut(s) 52, 160
BspLI GGNNCC 2 cut(s) 82, 181
BspPI GGATC 3 cut(s) 50, 174, 187
BspT107I GGYRCC 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 2 cut(s) 55, 179
BssNI GRCGYC 1 cut(s) 165
Bst2UI CCWGG 2 cut(s) 72, 119
BstACI GRCGYC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 32
BstENI CCTNNNNNAGG 1 cut(s) 116
BstFNI CGCG 1 cut(s) 97
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 2 cut(s) 58, 182
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 2 cut(s) 55, 179
BstMWI GCNNNNNNNGC 2 cut(s) 87, 96
BstNI CCWGG 2 cut(s) 72, 119
BstSCI CCNGG 2 cut(s) 70, 117
BstUI CGCG 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
BsuRI GGCC 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 168
CciI TCATGA 2 cut(s) 52, 160
CfoI GCGC 1 cut(s) 99
CseI GACGC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 186
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 4 cut(s) 53, 64, 152, 161
CviJI RGCY 2 cut(s) 31, 75
CviKI_1 RGCY 2 cut(s) 31, 75
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 1 cut(s) 32
DpnI GATC 2 cut(s) 57, 181
DpnII GATC 2 cut(s) 55, 179
Eco147I AGGCCT 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 175
EcoNI CCTNNNNNAGG 1 cut(s) 116
EcoRII CCWGG 2 cut(s) 70, 117
FaeI CATG 4 cut(s) 56, 67, 155, 164
FaiI YATR 5 cut(s) 21, 54, 65, 153, 162
FaqI GGGAC 1 cut(s) 19
FatI CATG 4 cut(s) 52, 63, 151, 160
GlaI GCGC 1 cut(s) 98
HaeIII GGCC 1 cut(s) 75
HgaI GACGC 1 cut(s) 173
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 4 cut(s) 56, 67, 155, 164
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 3 cut(s) 43, 122, 195
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 3 cut(s) 53, 126, 161
HpyAV CCTTC 1 cut(s) 199
HpyCH4V TGCA 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 96
HpyF3I CTNAG 1 cut(s) 32
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 4 cut(s) 56, 67, 155, 164
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 2 cut(s) 55, 179
LpnPI CCDG 4 cut(s) 57, 84, 104, 131
LweI GCATC 1 cut(s) 58
MalI GATC 2 cut(s) 57, 181
MboI GATC 2 cut(s) 55, 179
MboII GAAGA 1 cut(s) 149
MflI RGATCY 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 2 cut(s) 7, 86
MseI TTAA 1 cut(s) 202
MspR9I CCNGG 2 cut(s) 72, 119
MvaI CCWGG 2 cut(s) 72, 119
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 87, 96
NdeII GATC 2 cut(s) 55, 179
NlaIII CATG 4 cut(s) 56, 67, 155, 164
NlaIV GGNNCC 2 cut(s) 82, 181
NmeAIII GCCGAG 1 cut(s) 57
PagI TCATGA 2 cut(s) 52, 160
PceI AGGCCT 1 cut(s) 75
PfeI GAWTC 3 cut(s) 43, 122, 195
Psp6I CCWGG 2 cut(s) 70, 117
PspGI CCWGG 2 cut(s) 70, 117
PspN4I GGNNCC 2 cut(s) 82, 181
PsuI RGATCY 1 cut(s) 179
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 202
Sau3AI GATC 2 cut(s) 55, 179
ScrFI CCNGG 2 cut(s) 72, 119
SetI ASST 3 cut(s) 18, 33, 191
SfaNI GCATC 1 cut(s) 58
SseBI AGGCCT 1 cut(s) 75
SsiI CCGC 1 cut(s) 95
StuI AGGCCT 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 70, 117
TfiI GAWTC 3 cut(s) 43, 122, 195
Tru1I TTAA 1 cut(s) 202
Tru9I TTAA 1 cut(s) 202
TscAI CASTG 1 cut(s) 175
TspDTI ATGAA 3 cut(s) 36, 80, 149
TspRI CASTG 1 cut(s) 175
XagI CCTNNNNNAGG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.