Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003219

Physical Location & Seq

Genomic Coordinates Forward (+)

15253660 .. 15261289

Gene Structure 7630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGGACGAGAGAGGTGTACGAACAGAAGCTGAGGAGTGGGAATCTGCATCATGATCCTACCATGAAGCCAGGCCTCGGCACCCCTCGCTGCCCGCGTTGTCTCTCTCTCCTTGACCATGATTCAGGAAAGGGTGAATGGACTATCACTCCCGTTCTTCATGACGCCACTGCTGTTGCTGGCTCGGGTATTGGTGGAATGCTTAGTGCAATCCATGGCTTCAATACAGGGATCCCGTACCTTCAGAATCGCTTAAAAGGCCCAAAGTGGCTTCCTTTCTTAGTTGGGCTTCCTCCACTGCTACTCTTTTCGGGTGCCAGTGCTGCATTTGGAGGTTATGCACTTCCAAAGTTTGCTCAACTCACGGTGACTTCGTATTATGCCACCTCGAGTGCCTCACATTACGGGATTTCGCTTCTTACTCGACATATTGAAGAGACTCATACCTCCCGCTCTCAGCAAGAAAGACTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.16

Weight (kDa)

9.43

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41945 AT2G41945 AT2G41945
fragaria_vesca	FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750 FvH4_6g21750
malus_domestica	MD03G1221500.v1.1 MD11G1239000.v1.1
prunus_persica	Prupe.7G082900_v2.0.a1 Prupe.7G082900_v2.0.a1
pyrus_communis	pycom11g21050
rosa_chinensis	RchiOBHm_Chr3g0479091
rosa_laevigata	RLG00000023608
rosa_multiflora	Rmu_sc0005645.1_g000017 Rmu_sc0005992.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402740
rosa_rugosa	Rorug03G0170500 Rorug03G0170600 Rorug03G0170700 Rorug03G0170700 Rorug03G0170800 Rorug03G0170900 Rorug03G0304400 Rorug03G0304500 Rorug03G0304600 Rorug03G0304700
rosa_samantha	Rh3AG221800 Rh3BG254300 Rh3DG246500 Rh4AG008600 Rh4CG009300 Rh4CG009700 Rh4CG009800
rosa_wichuraiana	Rw3G019910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	80, 314
AccBSI	CCGCTC	1 cut(s)	453
AccII	CGCG	1 cut(s)	97
AciI	CCGC	2 cut(s)	95, 451
AclWI	GGATC	3 cut(s)	50, 226, 239
AcuI	CTGAAG	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	2 cut(s)	20, 239
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	223, 434
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw26I	GTCTC	2 cut(s)	107, 431
AlwI	GGATC	3 cut(s)	50, 226, 239
AlwNI	CAGNNNCTG	1 cut(s)	31
Ama87I	CYCGRG	2 cut(s)	184, 388
AoxI	GGCC	2 cut(s)	73, 259
ApeKI	GCWGC	2 cut(s)	90, 323
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	2 cut(s)	146, 379
AvaI	CYCGRG	2 cut(s)	184, 388
BamHI	GGATCC	1 cut(s)	231
BanI	GGYRCC	2 cut(s)	80, 314
BbvCI	CCTCAGC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	77, 310
BciT130I	CCWGG	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	107, 431
BisI	GCNGC	2 cut(s)	91, 324
BlsI	GCNGC	2 cut(s)	92, 325
Bme1390I	CCNGG	1 cut(s)	72
BmeT110I	CYCGRG	2 cut(s)	184, 388
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	3 cut(s)	82, 233, 316
BmrFI	CCNGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	58
Bpu10I	CCTNAGC	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	76, 214
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	2 cut(s)	76, 214
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMII	CTCAG	2 cut(s)	23, 470
BseNI	ACTGG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	77, 310
Bsh1236I	CGCG	1 cut(s)	97
BshFI	GGCC	2 cut(s)	75, 261
BshNI	GGYRCC	2 cut(s)	80, 314
BsiHKCI	CYCGRG	2 cut(s)	184, 388
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	107, 431
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	204
BsnI	GGCC	2 cut(s)	75, 261
BsoBI	CYCGRG	2 cut(s)	184, 388
Bsp143I	GATC	2 cut(s)	55, 231
Bsp19I	CCATGG	1 cut(s)	214
BspACI	CCGC	2 cut(s)	95, 451
BspANI	GGCC	2 cut(s)	75, 261
BspCNI	CTCAG	2 cut(s)	24, 469
BspFNI	CGCG	1 cut(s)	97
BspHI	TCATGA	2 cut(s)	52, 160
BspLI	GGNNCC	3 cut(s)	82, 233, 316
BspPI	GGATC	3 cut(s)	50, 226, 239
BspT107I	GGYRCC	2 cut(s)	80, 314
BsrBI	CCGCTC	1 cut(s)	453
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	2 cut(s)	76, 214
BssMI	GATC	2 cut(s)	55, 231
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	214
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	429
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	2 cut(s)	95, 181
BstDEI	CTNAG	5 cut(s)	32, 203, 280, 456, 470
BstDSI	CCRYGG	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	58, 234
BstMAI	GTCTC	2 cut(s)	107, 431
BstMBI	GATC	2 cut(s)	55, 231
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 258, 323
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	70
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	2 cut(s)	77, 310
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	75, 261
BtgI	CCRYGG	1 cut(s)	214
BtsI	GCAGTG	2 cut(s)	168, 296
BtsIMutI	CAGTG	3 cut(s)	168, 296, 325
Cac8I	GCNNGC	2 cut(s)	95, 181
CaiI	CAGNNNCTG	1 cut(s)	31
CciI	TCATGA	2 cut(s)	52, 160
Cfr13I	GGNCC	1 cut(s)	260
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	2 cut(s)	19, 238
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	5 cut(s)	53, 64, 119, 161, 215
CviJI	RGCY	8 cut(s)	31, 70, 75, 183, 219, 261, 271, 289
CviKI_1	RGCY	8 cut(s)	31, 70, 75, 183, 219, 261, 271, 289
CviQI	GTAC	2 cut(s)	19, 238
DdeI	CTNAG	5 cut(s)	32, 203, 280, 456, 470
DpnI	GATC	2 cut(s)	57, 233
DpnII	GATC	2 cut(s)	55, 231
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	214
Eco147I	AGGCCT	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	227
Eco88I	CYCGRG	2 cut(s)	184, 388
EcoRII	CCWGG	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	5 cut(s)	56, 67, 122, 164, 218
FaiI	YATR	9 cut(s)	54, 65, 120, 162, 216, 339, 381, 429, 444
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	5 cut(s)	52, 63, 118, 160, 214
FauI	CCCGC	2 cut(s)	102, 458
Fnu4HI	GCNGC	2 cut(s)	91, 324
Fsp4HI	GCNGC	2 cut(s)	91, 324
GluI	GCNGC	2 cut(s)	91, 324
HaeIII	GGCC	2 cut(s)	75, 261
HgaI	GACGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	5 cut(s)	56, 67, 122, 164, 218
HinfI	GANTC	5 cut(s)	43, 122, 247, 439, 468
HphI	GGTGA	2 cut(s)	146, 379
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	246, 473
Hpy188III	TCNNGA	3 cut(s)	53, 126, 161
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	4 cut(s)	49, 209, 326, 341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 258, 323
HpyF3I	CTNAG	5 cut(s)	32, 203, 280, 456, 470
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	5 cut(s)	56, 67, 122, 164, 218
Kzo9I	GATC	2 cut(s)	55, 231
LpnPI	CCDG	6 cut(s)	57, 84, 111, 165, 213, 331
Lsp1109I	GCAGC	2 cut(s)	77, 310
LweI	GCATC	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	2 cut(s)	57, 233
MbiI	CCGCTC	1 cut(s)	453
MboI	GATC	2 cut(s)	55, 231
MboII	GAAGA	2 cut(s)	149, 446
MflI	RGATCY	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	433, 462
MnlI	CCTC	9 cut(s)	7, 27, 86, 96, 303, 326, 397, 406, 457
MseI	TTAA	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	3 cut(s)	87, 258, 323
NcoI	CCATGG	1 cut(s)	214
NdeII	GATC	2 cut(s)	55, 231
NlaIII	CATG	5 cut(s)	56, 67, 122, 164, 218
NlaIV	GGNNCC	3 cut(s)	82, 233, 316
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	367
PaeR7I	CTCGAG	1 cut(s)	388
PagI	TCATGA	2 cut(s)	52, 160
PceI	AGGCCT	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	2 cut(s)	94, 371
PctI	GAATGC	1 cut(s)	204
PfeI	GAWTC	3 cut(s)	43, 122, 247
PkrI	GCNGC	2 cut(s)	92, 325
PleI	GAGTC	2 cut(s)	433, 462
PpsI	GAGTC	2 cut(s)	433, 462
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	3 cut(s)	82, 233, 316
PspPI	GGNCC	1 cut(s)	260
PspXI	VCTCGAGB	1 cut(s)	388
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	2 cut(s)	20, 239
RsaNI	GTAC	2 cut(s)	19, 238
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	2 cut(s)	91, 324
Sau3AI	GATC	2 cut(s)	55, 231
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	2 cut(s)	433, 462
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	6 cut(s)	18, 33, 243, 337, 389, 449
SfaNI	GCATC	1 cut(s)	58
Sfr274I	CTCGAG	1 cut(s)	388
SlaI	CTCGAG	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
SseBI	AGGCCT	1 cut(s)	75
SsiI	CCGC	2 cut(s)	95, 451
StuI	AGGCCT	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	2 cut(s)	389, 424
TfiI	GAWTC	3 cut(s)	43, 122, 247
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	3 cut(s)	175, 303, 325
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	2 cut(s)	90, 323
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	2 cut(s)	80, 149
TspRI	CASTG	3 cut(s)	175, 303, 325
XhoI	CTCGAG	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.