Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002502

Physical Location & Seq

Genomic Coordinates Reverse (-)

18628252 .. 18630779

Gene Structure 2528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTCTATGTCGTCTATGTCCTCCCCTTCCTCAGCTGTTTGTTCACCGGACCACTTCTCTCCTTCCGACCATCTCTGCTATGTCCAATGCAACTTTTGCCAAACCATCCTTGCGGTTAATGTTCCTTACACAAGCTTGTTCAAGACCGTAACTGTCCGATGTGGTTGCTGTACCAATCTCCTTTCGGTGAACATGAGATCATATGTCCTCCCAGCTTCTAACCAGCTCCAGCTCCAGCTCGGTCCTCACTCTTACTTCAATCCCCAGGATATTCTGGAGGAGCTGAGAGATGCACCGTCTAACATGAATATGATGATGATGAATCAACATCCTACTATGAATGACATACCATCTTTCATGGATCTTCATCAACAACATGAGATTCCTAAAGCACCACCCGTTAACCGCCCTCCAGAGAAAAGACAGAGAGTCCCATCCGCATATAACCGATTCATCAAGGAGGAGATCCAACGTATCAAAGCTGGTAATCCTGATATAAGCCACAGAGAAGCCTTTAGTGCTGCTGCCAAGAATTGGGCCCACTTCCCCCACATACACTTCGGGCTCGTGCCAGACAATCAACCCGTGAAGAAAACCAACATGCCCCAACAGGAGGGAGAGGATAACATGGTGATGAAAGAAGGGTTCTACGCTCCTGCAGCTGCTAACGTTGGTGTGACTCCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009909 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010093 GO:0010154 GO:0010158 GO:0010229 GO:0010450 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0090706 GO:0099402 GO:0140110 GO:1902183 GO:1903506 GO:1905392 GO:1905393 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

229

Amino Acids

25.78

Weight (kDa)

6.78

Isoelectric Point (pI)

58.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	21 - 77	5.5e-28	YABBY, N-terminal
YABBY	PF04690	124 - 188	8.1e-38	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45190 AT2G45190
fragaria_vesca	FvH4_5g00320 FvH4_5g00320 FvH4_7g11260 FvH4_7g11260 FvH4_7g11260
malus_domestica	MD04G1083800.v1.1 MD06G1065700.v1.1 MD07G1117200.v1.1
prunus_persica	Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.5G075800_v2.0.a1
pyrus_communis	pycom02g17050 pycom04g07490 pycom07g10750
rosa_chinensis	RchiOBHm_Chr1g0349391 RchiOBHm_Chr7g0202251
rosa_laevigata	RLG00000003614 RLG00000028552
rosa_multiflora	Rmu_sc0001394.1_g000004 Rmu_sc0004208.1_g000005 Rmu_sc0018468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00254710 Rroxscaffold_4G00305570
rosa_rugosa	Rorug01G0203200 Rorug01G0203300 Rorug07G0069300 Rorug07G0069400
rosa_samantha	Rh1AG220600 Rh1BG186800 Rh1CG205700 Rh1DG216200 Rh7AG196600 Rh7BG197800 Rh7CG207700 Rh7DG203200
rosa_wichuraiana	Rw1G018760 Rw7G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	534
AciI	CCGC	3 cut(s)	113, 406, 438
AclI	AACGTT	1 cut(s)	669
AclWI	GGATC	2 cut(s)	369, 460
AfaI	GTAC	1 cut(s)	172
AfiI	CCNNNNNNNGG	2 cut(s)	534, 613
AgsI	TTSAA	2 cut(s)	142, 259
AhdI	GACNNNNNGTC	1 cut(s)	428
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	9 cut(s)	35, 135, 215, 226, 232, 238, 283, 482, 662
AluI	AGCT	9 cut(s)	35, 135, 215, 226, 232, 238, 283, 482, 662
AlwI	GGATC	2 cut(s)	369, 460
AoxI	GGCC	1 cut(s)	537
ApaI	GGGCCC	1 cut(s)	541
ApeKI	GCWGC	4 cut(s)	521, 524, 659, 662
AspS9I	GGNCC	4 cut(s)	49, 242, 537, 538
AsuHPI	GGTGA	3 cut(s)	36, 199, 643
AvaII	GGWCC	2 cut(s)	49, 242
BaeGI	GKGCMC	1 cut(s)	541
BanII	GRGCYC	2 cut(s)	541, 567
BauI	CACGAG	1 cut(s)	566
BbvCI	CCTCAGC	1 cut(s)	31
BbvI	GCAGC	4 cut(s)	508, 511, 649, 671
BccI	CCATC	4 cut(s)	78, 113, 358, 442
BcgI	CGANNNNNNTGC	2 cut(s)	147, 181
BciT130I	CCWGG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	657
BisI	GCNGC	4 cut(s)	522, 525, 660, 663
BlsI	GCNGC	4 cut(s)	523, 526, 661, 664
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	2 cut(s)	49, 242
BmeRI	GACNNNNNGTC	1 cut(s)	428
BmgT120I	GGNCC	4 cut(s)	49, 242, 537, 538
BmiI	GGNNCC	1 cut(s)	539
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	280
BpmI	CTGGAG	4 cut(s)	212, 218, 296, 396
Bpu10I	CCTNAGC	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	2 cut(s)	534, 613
Bse8I	GATNNNNATC	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	3 cut(s)	105, 328, 434
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	2 cut(s)	534, 613
BseMII	CTCAG	2 cut(s)	45, 275
BseRI	GAGGAG	2 cut(s)	293, 476
BseSI	GKGCMC	1 cut(s)	541
BseXI	GCAGC	4 cut(s)	508, 511, 649, 671
BseYI	CCCAGC	1 cut(s)	211
BshFI	GGCC	1 cut(s)	539
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	534, 613
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	539
Bsp120I	GGGCCC	1 cut(s)	537
Bsp1286I	GDGCHC	2 cut(s)	541, 567
Bsp143I	GATC	3 cut(s)	197, 361, 465
BspACI	CCGC	3 cut(s)	113, 406, 438
BspANI	GGCC	1 cut(s)	539
BspCNI	CTCAG	2 cut(s)	44, 276
BspLI	GGNNCC	1 cut(s)	539
BspMAI	CTGCAG	1 cut(s)	661
BspPI	GGATC	2 cut(s)	369, 460
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	3 cut(s)	197, 361, 465
BssSI	CACGAG	1 cut(s)	566
Bst2BI	CACGAG	1 cut(s)	566
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	3 cut(s)	148, 154, 297
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	31, 284
BstF5I	GGATG	3 cut(s)	105, 328, 434
BstKTI	GATC	3 cut(s)	200, 364, 468
BstMBI	GATC	3 cut(s)	197, 361, 465
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 518, 659
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	657
BstSLI	GKGCMC	1 cut(s)	541
BstV1I	GCAGC	4 cut(s)	508, 511, 649, 671
BstX2I	RGATCY	2 cut(s)	361, 465
BstYI	RGATCY	2 cut(s)	361, 465
BsuRI	GGCC	1 cut(s)	539
BtsCI	GGATG	3 cut(s)	105, 328, 434
Cfr13I	GGNCC	4 cut(s)	49, 242, 537, 538
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	6 cut(s)	193, 304, 358, 377, 601, 628
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	2 cut(s)	31, 284
DpnI	GATC	3 cut(s)	199, 363, 467
DpnII	GATC	3 cut(s)	197, 361, 465
DriI	GACNNNNNGTC	1 cut(s)	428
Eam1105I	GACNNNNNGTC	1 cut(s)	428
Eco24I	GRGCYC	2 cut(s)	541, 567
Eco47I	GGWCC	2 cut(s)	49, 242
EcoRII	CCWGG	1 cut(s)	264
EcoT38I	GRGCYC	2 cut(s)	541, 567
FaeI	CATG	6 cut(s)	196, 307, 361, 380, 604, 631
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	6 cut(s)	192, 303, 357, 376, 600, 627
FauNDI	CATATG	1 cut(s)	202
Fnu4HI	GCNGC	4 cut(s)	522, 525, 660, 663
FokI	GGATG	3 cut(s)	92, 315, 421
FriOI	GRGCYC	2 cut(s)	541, 567
Fsp4HI	GCNGC	4 cut(s)	522, 525, 660, 663
GluI	GCNGC	4 cut(s)	522, 525, 660, 663
GsaI	CCCAGC	1 cut(s)	215
GsuI	CTGGAG	4 cut(s)	212, 218, 296, 396
HaeIII	GGCC	1 cut(s)	539
HapII	CCGG	1 cut(s)	47
Hin1II	CATG	6 cut(s)	196, 307, 361, 380, 604, 631
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	5 cut(s)	322, 382, 429, 450, 679
HpaI	GTTAAC	1 cut(s)	403
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	3 cut(s)	36, 199, 643
Hpy166II	GTNNAC	3 cut(s)	44, 190, 403
Hpy188I	TCNGA	2 cut(s)	67, 158
Hpy188III	TCNNGA	4 cut(s)	142, 275, 413, 491
Hpy8I	GTNNAC	3 cut(s)	44, 190, 403
HpyAV	CCTTC	3 cut(s)	36, 72, 635
HpyCH4III	ACNGT	3 cut(s)	148, 154, 297
HpyCH4IV	ACGT	2 cut(s)	472, 669
HpyCH4V	TGCA	3 cut(s)	90, 293, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 518, 659
HpyF3I	CTNAG	2 cut(s)	31, 284
HpySE526I	ACGT	2 cut(s)	472, 669
Hsp92II	CATG	6 cut(s)	196, 307, 361, 380, 604, 631
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	3 cut(s)	197, 361, 465
LmnI	GCTCC	4 cut(s)	231, 237, 280, 658
Lsp1109I	GCAGC	4 cut(s)	508, 511, 649, 671
LweI	GCATC	1 cut(s)	280
MaeII	ACGT	2 cut(s)	472, 669
MaeIII	GTNAC	2 cut(s)	148, 676
MalI	GATC	3 cut(s)	199, 363, 467
MboI	GATC	3 cut(s)	197, 361, 465
MboII	GAAGA	2 cut(s)	356, 601
MflI	RGATCY	2 cut(s)	361, 465
MhlI	GDGCHC	2 cut(s)	541, 567
MluCI	AATT	1 cut(s)	532
MlyI	GAGTC	2 cut(s)	438, 673
MmeI	TCCRAC	2 cut(s)	90, 493
MnlI	CCTC	9 cut(s)	31, 40, 218, 255, 271, 420, 454, 607, 613
MseI	TTAA	3 cut(s)	117, 402, 688
MslI	CAYNNNNRTG	2 cut(s)	308, 632
MspA1I	CMGCKG	2 cut(s)	35, 662
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	3 cut(s)	96, 518, 659
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	3 cut(s)	197, 361, 465
NlaIII	CATG	6 cut(s)	196, 307, 361, 380, 604, 631
NlaIV	GGNNCC	1 cut(s)	539
NmuCI	GTSAC	1 cut(s)	676
NspI	RCATGY	1 cut(s)	604
PfeI	GAWTC	3 cut(s)	322, 382, 450
PflMI	CCANNNNNTGG	1 cut(s)	534
PkrI	GCNGC	4 cut(s)	523, 526, 661, 664
PleI	GAGTC	2 cut(s)	437, 673
PpsI	GAGTC	2 cut(s)	437, 673
Psp1406I	AACGTT	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	539
PspOMI	GGGCCC	1 cut(s)	537
PspPI	GGNCC	4 cut(s)	49, 242, 537, 538
PstI	CTGCAG	1 cut(s)	661
PsuI	RGATCY	2 cut(s)	361, 465
PvuII	CAGCTG	2 cut(s)	35, 662
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
RseI	CAYNNNNRTG	2 cut(s)	308, 632
SaqAI	TTAA	3 cut(s)	117, 402, 688
SatI	GCNGC	4 cut(s)	522, 525, 660, 663
Sau3AI	GATC	3 cut(s)	197, 361, 465
Sau96I	GGNCC	4 cut(s)	49, 242, 537, 538
SchI	GAGTC	2 cut(s)	438, 673
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	2 cut(s)	541, 567
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	657
SinI	GGWCC	2 cut(s)	49, 242
SmiMI	CAYNNNNRTG	2 cut(s)	308, 632
Sse9I	AATT	1 cut(s)	532
SsiI	CCGC	3 cut(s)	113, 406, 438
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	3 cut(s)	148, 154, 297
TaiI	ACGT	2 cut(s)	475, 672
TaqII	GACCGA	1 cut(s)	230
TasI	AATT	1 cut(s)	532
TfiI	GAWTC	3 cut(s)	322, 382, 450
Tru1I	TTAA	3 cut(s)	117, 402, 688
Tru9I	TTAA	3 cut(s)	117, 402, 688
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	4 cut(s)	521, 524, 659, 662
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	7 cut(s)	320, 335, 346, 353, 356, 442, 650
Van91I	CCANNNNNTGG	1 cut(s)	534
VpaK11BI	GGWCC	2 cut(s)	49, 242
XceI	RCATGY	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.