Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002502

Physical Location & Seq

Genomic Coordinates Forward (+)

17900965 .. 17903335

Gene Structure 2371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G017210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTCATCCTCTAATTCTGCTGCTTCAACCTTGTCCCTTGACCACCTTGCTCCTTCCGAGCAGCTCTGCTATGTCCATTGCAACATTTGCGACACTGTCCTTGCGGTGAGTGTACCTTGCACAAGTTTGTTTAAGACTGTGACGGTCCGATGTGGCCACTGCACCAACCTGCTTCCGGTGAACATGCGCGGGTTGCTTCTGCCTTCCCCCAATCAGTTTCATCATCTTGGTCACTCCTTCTTCTCCCAGGCTAATTCCCATAATAACCTTCTGATTAACCATGAATATTGTGCATCAGGATCAGGAATTCCAATGAATCCAACCCCAAACTTTCTGATGAACAATCAAACTAGCAGCCTGAATGACTTTGCTGTAAGACCAAGAGGAGGAGTAGTTGATGAGCTCCCAAGGCCCCCAGTTATAAACAGACCTCCGGAGAAGAGACAGAGAGTCCCCTCAGCCTACAACCGCTTCATCAAAGACGAGATCCAACGCATCAAGTCTGTGAATCCTGATATATCCCATAGAGAAGCCTTCAGCGCAGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCTGACCAGAACACTGTGAAGAAGACAAATGTGCGCCAACAGGAAGCTGGAGAGGACGTTCTGATGAAAGATCACAACGGATTTTTCGCTGCTGCTAATAATAATGTGCGGGTCTCTCCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

238

Amino Acids

26.43

Weight (kDa)

8.73

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	18 - 71	5.2e-28	YABBY, N-terminal
YABBY	PF04690	136 - 195	1.5e-36	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45190 AT2G45190
fragaria_vesca	FvH4_5g00320 FvH4_5g00320 FvH4_7g11260 FvH4_7g11260 FvH4_7g11260
malus_domestica	MD04G1083800.v1.1 MD06G1065700.v1.1 MD07G1117200.v1.1
prunus_persica	Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.5G075800_v2.0.a1
pyrus_communis	pycom02g17050 pycom04g07490 pycom07g10750
rosa_chinensis	RchiOBHm_Chr1g0349391 RchiOBHm_Chr7g0202251
rosa_laevigata	RLG00000003614 RLG00000028552
rosa_multiflora	Rmu_sc0001394.1_g000004 Rmu_sc0004208.1_g000005 Rmu_sc0018468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00254710 Rroxscaffold_4G00305570
rosa_rugosa	Rorug01G0203200 Rorug01G0203300 Rorug07G0069300 Rorug07G0069400
rosa_samantha	Rh1AG220600 Rh1BG186800 Rh1CG205700 Rh1DG216200 Rh7AG196600 Rh7BG197800 Rh7CG207700 Rh7DG203200
rosa_wichuraiana	Rw1G018760 Rw7G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	422
Acc36I	ACCTGC	1 cut(s)	177
AccII	CGCG	1 cut(s)	189
AccIII	TCCGGA	1 cut(s)	433
AciI	CCGC	4 cut(s)	104, 189, 469, 700
AclWI	GGATC	2 cut(s)	307, 481
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	306
AcuI	CTGAAG	1 cut(s)	520
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	2 cut(s)	175, 386
AgsI	TTSAA	1 cut(s)	27
AhdI	GACNNNNNGTC	1 cut(s)	449
AjnI	CCWGG	1 cut(s)	246
AloI	GAACNNNNNNTCC	2 cut(s)	633, 665
AluBI	AGCT	4 cut(s)	64, 403, 545, 638
AluI	AGCT	4 cut(s)	64, 403, 545, 638
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	3 cut(s)	436, 590, 709
AlwI	GGATC	2 cut(s)	307, 481
Aor13HI	TCCGGA	1 cut(s)	433
AoxI	GGCC	3 cut(s)	154, 410, 558
ApaI	GGGCCC	1 cut(s)	562
ApeKI	GCWGC	7 cut(s)	20, 61, 354, 542, 545, 680, 683
ApoI	RAATTY	1 cut(s)	306
AspLEI	GCGC	3 cut(s)	189, 542, 627
AspS9I	GGNCC	4 cut(s)	145, 411, 558, 559
AsuHPI	GGTGA	2 cut(s)	118, 190
AvaII	GGWCC	1 cut(s)	145
BaeGI	GKGCMC	1 cut(s)	562
BalI	TGGCCA	1 cut(s)	156
BanII	GRGCYC	2 cut(s)	405, 562
BbsI	GAAGAC	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	405
BbvCI	CCTCAGC	1 cut(s)	457
BbvI	GCAGC	7 cut(s)	7, 73, 366, 532, 554, 667, 670
BciT130I	CCWGG	1 cut(s)	248
BcoDI	GTCTC	3 cut(s)	436, 590, 709
BfaI	CTAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	177
BisI	GCNGC	7 cut(s)	21, 62, 355, 543, 546, 681, 684
BlsI	GCNGC	7 cut(s)	22, 63, 356, 544, 547, 682, 685
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	145
BmeRI	GACNNNNNGTC	1 cut(s)	449
BmgT120I	GGNCC	4 cut(s)	145, 411, 558, 559
BmiI	GGNNCC	2 cut(s)	413, 560
BmrFI	CCNGG	1 cut(s)	248
BmrI	ACTGGG	1 cut(s)	410
BmsI	GCATC	2 cut(s)	302, 504
BmuI	ACTGGG	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	620
BpmI	CTGGAG	1 cut(s)	660
Bpu10I	CCTNAGC	1 cut(s)	457
BsaI	GGTCTC	2 cut(s)	590, 709
BsaJI	CCNNGG	2 cut(s)	246, 407
BsaWI	WCCGGW	2 cut(s)	175, 433
BsaXI	ACNNNNNCTCC	4 cut(s)	378, 408, 633, 663
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 386
Bse1I	ACTGG	1 cut(s)	416
Bse3DI	GCAATG	1 cut(s)	76
BseAI	TCCGGA	1 cut(s)	433
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	2 cut(s)	246, 407
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	2 cut(s)	175, 386
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	1 cut(s)	416
BseRI	GAGGAG	2 cut(s)	399, 402
BseSI	GKGCMC	1 cut(s)	562
BseXI	GCAGC	7 cut(s)	7, 73, 366, 532, 554, 667, 670
BsgI	GTGCAG	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	3 cut(s)	156, 412, 560
BsiHKAI	GWGCWC	1 cut(s)	405
BsiSI	CCGG	2 cut(s)	176, 434
BslFI	GGGAC	2 cut(s)	19, 437
BslI	CCNNNNNNNGG	2 cut(s)	175, 386
BsmAI	GTCTC	3 cut(s)	436, 590, 709
BsmFI	GGGAC	2 cut(s)	19, 437
BsnI	GGCC	3 cut(s)	156, 412, 560
Bso31I	GGTCTC	2 cut(s)	590, 709
Bsp120I	GGGCCC	1 cut(s)	558
Bsp1286I	GDGCHC	2 cut(s)	405, 562
Bsp13I	TCCGGA	1 cut(s)	433
Bsp143I	GATC	3 cut(s)	299, 486, 661
BspACI	CCGC	4 cut(s)	104, 189, 469, 700
BspANI	GGCC	3 cut(s)	156, 412, 560
BspCNI	CTCAG	1 cut(s)	470
BspEI	TCCGGA	1 cut(s)	433
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	413, 560
BspMI	ACCTGC	1 cut(s)	177
BspPI	GGATC	2 cut(s)	307, 481
BspTNI	GGTCTC	2 cut(s)	590, 709
BsrDI	GCAATG	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	416
BssECI	CCNNGG	2 cut(s)	246, 407
BssMI	GATC	3 cut(s)	299, 486, 661
BssT1I	CCWWGG	1 cut(s)	407
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	4 cut(s)	97, 139, 145, 607
Bst6I	CTCTTC	1 cut(s)	434
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	457, 549
BstF5I	GGATG	1 cut(s)	5
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	3 cut(s)	189, 542, 627
BstKTI	GATC	3 cut(s)	302, 489, 664
BstMAI	GTCTC	3 cut(s)	436, 590, 709
BstMBI	GATC	3 cut(s)	299, 486, 661
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 193, 409, 539
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	562
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	7 cut(s)	7, 73, 366, 532, 554, 667, 670
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	486
BsuRI	GGCC	3 cut(s)	156, 412, 560
BtsCI	GGATG	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	3 cut(s)	93, 157, 603
BveI	ACCTGC	1 cut(s)	177
CfoI	GCGC	3 cut(s)	189, 542, 627
Cfr13I	GGNCC	4 cut(s)	145, 411, 558, 559
CpoI	CGGWCCG	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	113
CspI	CGGWCCG	1 cut(s)	145
CviAII	CATG	3 cut(s)	184, 281, 589
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	2 cut(s)	457, 549
DpnI	GATC	3 cut(s)	301, 488, 663
DpnII	GATC	3 cut(s)	299, 486, 661
DriI	GACNNNNNGTC	1 cut(s)	449
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	434
Eam1105I	GACNNNNNGTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	434
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	407
Eco24I	GRGCYC	2 cut(s)	405, 562
Eco31I	GGTCTC	2 cut(s)	590, 709
Eco47I	GGWCC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	520
EcoICRI	GAGCTC	1 cut(s)	403
EcoO109I	RGGNCCY	1 cut(s)	411
EcoRI	GAATTC	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	407
EcoT38I	GRGCYC	2 cut(s)	405, 562
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	3 cut(s)	187, 284, 592
FaiI	YATR	8 cut(s)	72, 185, 261, 282, 422, 518, 525, 590
FaqI	GGGAC	2 cut(s)	19, 437
FatI	CATG	3 cut(s)	183, 280, 588
FauI	CCCGC	2 cut(s)	182, 693
Fnu4HI	GCNGC	7 cut(s)	21, 62, 355, 543, 546, 681, 684
FriOI	GRGCYC	2 cut(s)	405, 562
Fsp4HI	GCNGC	7 cut(s)	21, 62, 355, 543, 546, 681, 684
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	3 cut(s)	188, 541, 626
GluI	GCNGC	7 cut(s)	21, 62, 355, 543, 546, 681, 684
GsuI	CTGGAG	1 cut(s)	660
HaeIII	GGCC	3 cut(s)	156, 412, 560
HapII	CCGG	2 cut(s)	176, 434
HhaI	GCGC	3 cut(s)	189, 542, 627
Hin1II	CATG	3 cut(s)	187, 284, 592
Hin6I	GCGC	3 cut(s)	187, 540, 625
HinP1I	GCGC	3 cut(s)	187, 540, 625
HinfI	GANTC	3 cut(s)	316, 450, 508
HpaII	CCGG	2 cut(s)	176, 434
HphI	GGTGA	2 cut(s)	118, 190
Hpy166II	GTNNAC	2 cut(s)	113, 181
Hpy188I	TCNGA	5 cut(s)	58, 149, 273, 336, 654
Hpy188III	TCNNGA	4 cut(s)	297, 303, 434, 512
Hpy8I	GTNNAC	2 cut(s)	113, 181
HpyAV	CCTTC	5 cut(s)	63, 213, 247, 278, 544
HpyCH4III	ACNGT	4 cut(s)	97, 139, 145, 607
HpyCH4IV	ACGT	1 cut(s)	648
HpyCH4V	TGCA	4 cut(s)	81, 120, 162, 293
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 193, 409, 539
HpyF3I	CTNAG	2 cut(s)	457, 549
HpySE526I	ACGT	1 cut(s)	648
Hsp92II	CATG	3 cut(s)	187, 284, 592
HspAI	GCGC	3 cut(s)	187, 540, 625
Kpn2I	TCCGGA	1 cut(s)	433
Kzo9I	GATC	3 cut(s)	299, 486, 661
LmnI	GCTCC	2 cut(s)	55, 408
Lsp1109I	GCAGC	7 cut(s)	7, 73, 366, 532, 554, 667, 670
LweI	GCATC	2 cut(s)	302, 504
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	648
MaeIII	GTNAC	2 cut(s)	139, 230
MalI	GATC	3 cut(s)	301, 488, 663
MboI	GATC	3 cut(s)	299, 486, 661
MboII	GAAGA	4 cut(s)	232, 451, 622, 625
MflI	RGATCY	1 cut(s)	486
MhlI	GDGCHC	2 cut(s)	405, 562
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	4 cut(s)	13, 253, 306, 553
MluNI	TGGCCA	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	459
MmeI	TCCRAC	2 cut(s)	344, 514
MnlI	CCTC	6 cut(s)	19, 377, 380, 441, 466, 637
Mox20I	TGGCCA	1 cut(s)	156
MroI	TCCGGA	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	2 cut(s)	132, 276
Msp20I	TGGCCA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	2 cut(s)	176, 434
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	87, 193, 409, 539
NdeII	GATC	3 cut(s)	299, 486, 661
NlaIII	CATG	3 cut(s)	187, 284, 592
NlaIV	GGNNCC	2 cut(s)	413, 560
NmuCI	GTSAC	2 cut(s)	139, 230
NspI	RCATGY	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	316, 508
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	7 cut(s)	22, 63, 356, 544, 547, 682, 685
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
PsiI	TTATAA	1 cut(s)	422
Psp124BI	GAGCTC	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	413, 560
PspOMI	GGGCCC	1 cut(s)	558
PspPI	GGNCC	4 cut(s)	145, 411, 558, 559
PsuI	RGATCY	1 cut(s)	486
PsyI	GACNNNGTC	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
Rsr2I	CGGWCCG	1 cut(s)	145
RsrII	CGGWCCG	1 cut(s)	145
SacI	GAGCTC	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	132, 276
SatI	GCNGC	7 cut(s)	21, 62, 355, 543, 546, 681, 684
Sau3AI	GATC	3 cut(s)	299, 486, 661
Sau96I	GGNCC	4 cut(s)	145, 411, 558, 559
SchI	GAGTC	1 cut(s)	459
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	2 cut(s)	405, 562
SfaNI	GCATC	2 cut(s)	302, 504
SinI	GGWCC	1 cut(s)	145
Sse9I	AATT	4 cut(s)	13, 253, 306, 553
SsiI	CCGC	4 cut(s)	104, 189, 469, 700
SspI	AATATT	1 cut(s)	287
SspMI	CTAG	1 cut(s)	351
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	407
TaaI	ACNGT	4 cut(s)	97, 139, 145, 607
TaiI	ACGT	1 cut(s)	651
TasI	AATT	4 cut(s)	13, 253, 306, 553
TfiI	GAWTC	2 cut(s)	316, 508
Tru1I	TTAA	2 cut(s)	132, 276
Tru9I	TTAA	2 cut(s)	132, 276
TscAI	CASTG	3 cut(s)	100, 164, 610
TseFI	GTSAC	2 cut(s)	139, 230
TseI	GCWGC	7 cut(s)	20, 61, 354, 542, 545, 680, 683
Tsp45I	GTSAC	2 cut(s)	139, 230
TspDTI	ATGAA	6 cut(s)	209, 297, 329, 353, 463, 671
TspGWI	ACGGA	1 cut(s)	684
TspRI	CASTG	3 cut(s)	100, 164, 610
Tth111I	GACNNNGTC	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	306
XceI	RCATGY	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	1 cut(s)	635
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.