Rorug07G0069400

Axial regulator YABBY 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002502
Physical Location & Seq
Reverse (-)
5252477 .. 5254343
1867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0069400.1

Sequence Viewer

Length: 726 bp
ATGGACATTTTGGACTTGAGGATAAATTGGGAACTCAGAAGATGCTGCAACCATGATCAAGTGATATTTCTGATCACTACTGCTATCTCCATTGTCATTATACTTGTGCTGTGGAGGACAGTAGTGATGACACCATTTAAGCTTATAACTGTGTTTCTCCATGAGGTGAGCCATGCTTTGGCTTGTTGGCTTACATGTGGGAAGGTGGAAGGGATTAAAGTTCATGCAGATGAAGGTGGAGTCACACAAACCCGTGGCGGTGTATACTGGTTAATTTTGCCAGCAGGATATCTTGGTTCATCCTTTTGGGGGATGGTATTGATTCTTGCATCTACGAAAGGAATTACTGCACAAATAGCTGCCGGGTGTTTTACTGTTGCTCTAGTTGTTGTGCTCTTCTTAGCTAAAAATTGGACACTTCGAGGCCTTTGTCTAGGTTTCCTCTTTTTCTTTGGTCTAATTTGGTATCTCCAAGTATACACACCTGTTCGTATGCTACGTGAAGTGATTCTGTTTACTGGTGTAATGAACAGCTTGTTTTCAGTTTATGATATCTACGACGATCTCATATCCCGTAGAATCAATTCCAGTGATGCTGAGAAATTTGCAGAAGAATGTCCTTGCTGTACTGGTTGTGGTTGGGGTGTCATTTGGGGTTTCTTTTCTTTTGTGTATCTTTGTGTGGCTCTGTACCTTGCTCTTGTGATTTTGGCTAATAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YABBY

Protein Analysis

241

Amino Acids

27.13

Weight (kDa)

7.99

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M50B PF13398 30 - 228 1.9e-55 Peptidase M50B-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 146
AccB7I CCANNNNNTGG 1 cut(s) 178
AccI GTMKAC 2 cut(s) 264, 477
AciI CCGC 1 cut(s) 258
AcsI RAATTY 1 cut(s) 602
AfaI GTAC 2 cut(s) 628, 692
AfiI CCNNNNNNNGG 2 cut(s) 178, 309
AflIII ACRYGT 1 cut(s) 194
AluBI AGCT 4 cut(s) 142, 359, 404, 534
AluI AGCT 4 cut(s) 142, 359, 404, 534
Alw21I GWGCWC 1 cut(s) 396
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 2 cut(s) 45, 359
ApoI RAATTY 1 cut(s) 602
Asp700I GAANNNNTTC 2 cut(s) 507, 583
AsuC2I CCSGG 1 cut(s) 364
AsuHPI GGTGA 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 32, 346
BccI CCATC 1 cut(s) 307
BclI TGATCA 2 cut(s) 55, 72
BcnI CCSGG 1 cut(s) 364
BfaI CTAG 2 cut(s) 383, 434
BisI GCNGC 2 cut(s) 46, 360
BlsI GCNGC 2 cut(s) 47, 361
Bme1390I CCNGG 1 cut(s) 364
BmrFI CCNGG 1 cut(s) 364
BmsI GCATC 3 cut(s) 32, 338, 583
BpuEI CTTGAG 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 364
BsaAI YACGTR 1 cut(s) 500
BsaJI CCNNGG 1 cut(s) 253
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 309
Bse1I ACTGG 4 cut(s) 272, 523, 588, 634
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 2 cut(s) 299, 318
BseLI CCNNNNNNNGG 2 cut(s) 178, 309
BseMII CTCAG 2 cut(s) 49, 588
BseNI ACTGG 4 cut(s) 272, 523, 588, 634
BseXI GCAGC 2 cut(s) 32, 346
BsgI GTGCAG 1 cut(s) 333
BshFI GGCC 1 cut(s) 426
BsiHKAI GWGCWC 1 cut(s) 396
BsiSI CCGG 1 cut(s) 363
BslI CCNNNNNNNGG 2 cut(s) 178, 309
BsnI GGCC 1 cut(s) 426
Bsp1286I GDGCHC 1 cut(s) 396
Bsp143I GATC 3 cut(s) 55, 72, 562
BspACI CCGC 1 cut(s) 258
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 2 cut(s) 48, 589
BspQI GCTCTTC 1 cut(s) 401
BsrI ACTGG 4 cut(s) 272, 523, 588, 634
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 3 cut(s) 55, 72, 562
BssNAI GTATAC 2 cut(s) 265, 478
Bst1107I GTATAC 2 cut(s) 265, 478
Bst4CI ACNGT 3 cut(s) 121, 151, 376
Bst6I CTCTTC 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 500
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 3 cut(s) 35, 400, 597
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 2 cut(s) 299, 318
BstKTI GATC 3 cut(s) 58, 75, 565
BstMBI GATC 3 cut(s) 55, 72, 562
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 362
BstV1I GCAGC 2 cut(s) 32, 346
BstZ17I GTATAC 2 cut(s) 265, 478
BsuRI GGCC 1 cut(s) 426
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 2 cut(s) 299, 318
BtsIMutI CAGTG 1 cut(s) 595
Cac8I GCNNGC 1 cut(s) 282
Csp6I GTAC 2 cut(s) 627, 691
CviAII CATG 5 cut(s) 53, 161, 173, 195, 224
CviQI GTAC 2 cut(s) 627, 691
DdeI CTNAG 3 cut(s) 35, 400, 597
DpnI GATC 3 cut(s) 57, 74, 564
DpnII GATC 3 cut(s) 55, 72, 562
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
Eco147I AGGCCT 1 cut(s) 426
Eco32I GATATC 2 cut(s) 290, 553
EcoRV GATATC 2 cut(s) 290, 553
FaeI CATG 5 cut(s) 56, 164, 176, 198, 227
FatI CATG 5 cut(s) 52, 160, 172, 194, 223
FbaI TGATCA 2 cut(s) 55, 72
FblI GTMKAC 2 cut(s) 264, 477
Fnu4HI GCNGC 2 cut(s) 46, 360
FokI GGATG 2 cut(s) 286, 325
Fsp4HI GCNGC 2 cut(s) 46, 360
FspBI CTAG 2 cut(s) 383, 434
GluI GCNGC 2 cut(s) 46, 360
HaeIII GGCC 1 cut(s) 426
HapII CCGG 1 cut(s) 363
Hin1II CATG 5 cut(s) 56, 164, 176, 198, 227
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 4 cut(s) 240, 322, 508, 579
HpaII CCGG 1 cut(s) 363
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 3 cut(s) 265, 478, 516
Hpy188I TCNGA 2 cut(s) 38, 72
Hpy8I GTNNAC 3 cut(s) 265, 478, 516
Hpy99I CGWCG 1 cut(s) 563
HpyAV CCTTC 3 cut(s) 196, 203, 227
HpyCH4III ACNGT 3 cut(s) 121, 151, 376
HpyCH4IV ACGT 1 cut(s) 499
HpyCH4V TGCA 5 cut(s) 48, 227, 329, 350, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 3 cut(s) 35, 400, 597
HpySE526I ACGT 1 cut(s) 499
Hsp92II CATG 5 cut(s) 56, 164, 176, 198, 227
Ksp22I TGATCA 2 cut(s) 55, 72
Kzo9I GATC 3 cut(s) 55, 72, 562
LguI GCTCTTC 1 cut(s) 401
LpnPI CCDG 8 cut(s) 253, 270, 294, 376, 498, 504, 601, 615
Lsp1109I GCAGC 2 cut(s) 32, 346
LweI GCATC 3 cut(s) 32, 338, 583
MaeI CTAG 2 cut(s) 383, 434
MaeII ACGT 1 cut(s) 499
MaeIII GTNAC 1 cut(s) 241
MalI GATC 3 cut(s) 57, 74, 564
MboI GATC 3 cut(s) 55, 72, 562
MboII GAAGA 3 cut(s) 51, 388, 623
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 7 cut(s) 25, 273, 342, 409, 459, 583, 602
MlyI GAGTC 1 cut(s) 249
MnlI CCTC 5 cut(s) 12, 108, 157, 416, 452
MroXI GAANNNNTTC 2 cut(s) 507, 583
MseI TTAA 3 cut(s) 138, 216, 272
MslI CAYNNNNRTG 1 cut(s) 228
MspI CCGG 1 cut(s) 363
MspR9I CCNGG 1 cut(s) 364
MwoI GCNNNNNNNGC 1 cut(s) 356
NciI CCSGG 1 cut(s) 364
NdeII GATC 3 cut(s) 55, 72, 562
NlaIII CATG 5 cut(s) 56, 164, 176, 198, 227
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 1 cut(s) 198
PceI AGGCCT 1 cut(s) 426
PciI ACATGT 1 cut(s) 194
PciSI GCTCTTC 1 cut(s) 401
PcsI WCGNNNNNNNCGW 1 cut(s) 496
PdmI GAANNNNTTC 2 cut(s) 507, 583
PfeI GAWTC 3 cut(s) 322, 508, 579
PflMI CCANNNNNTGG 1 cut(s) 178
PkrI GCNGC 2 cut(s) 47, 361
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
Ppu21I YACGTR 1 cut(s) 500
PscI ACATGT 1 cut(s) 194
PsiI TTATAA 1 cut(s) 146
RsaI GTAC 2 cut(s) 628, 692
RsaNI GTAC 2 cut(s) 627, 691
RseI CAYNNNNRTG 1 cut(s) 228
SapI GCTCTTC 1 cut(s) 401
SaqAI TTAA 3 cut(s) 138, 216, 272
SatI GCNGC 2 cut(s) 46, 360
Sau3AI GATC 3 cut(s) 55, 72, 562
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 1 cut(s) 364
SduI GDGCHC 1 cut(s) 396
SfaNI GCATC 3 cut(s) 32, 338, 583
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 7 cut(s) 25, 273, 342, 409, 459, 583, 602
SseBI AGGCCT 1 cut(s) 426
SsiI CCGC 1 cut(s) 258
SspMI CTAG 2 cut(s) 383, 434
StuI AGGCCT 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 362
TaaI ACNGT 3 cut(s) 121, 151, 376
TaiI ACGT 1 cut(s) 502
TaqI TCGA 1 cut(s) 421
TasI AATT 7 cut(s) 25, 273, 342, 409, 459, 583, 602
TatI WGTACW 1 cut(s) 626
TfiI GAWTC 3 cut(s) 322, 508, 579
Tru1I TTAA 3 cut(s) 138, 216, 272
Tru9I TTAA 3 cut(s) 138, 216, 272
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 2 cut(s) 45, 359
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 4 cut(s) 212, 246, 288, 542
TspRI CASTG 1 cut(s) 595
Van91I CCANNNNNTGG 1 cut(s) 178
XapI RAATTY 1 cut(s) 602
XceI RCATGY 1 cut(s) 198
XmiI GTMKAC 2 cut(s) 264, 477
XmnI GAANNNNTTC 2 cut(s) 507, 583
XspI CTAG 2 cut(s) 383, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.