Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002502

Physical Location & Seq

Genomic Coordinates Reverse (-)

14298844 .. 14301759

Gene Structure 2916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1117200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCTTCAGCTGCAGCATCATCCACTGTCTTTAACTCACAGGACCAACAACACCACCACCACCTTCTCTCCCCCACCGATCAGCTCTGTTATGTCCATTGCAACTTCTGTGACACCGTCCTTGCTGTGAGCGTTCCTTGCAGCAGTTTGTTCAAGACTGTGACTGTTCGATGTGGCCACTGCAGCAACCTTATCTCCGTCAACATGTGTGCCCTTCTTCTTCCTCCGGCTAATAATAATAACCAACTTCACCTTCCACATCCTTTCTTCTCCACTCCTCACAATCTCCTTCAGGAGGAAATCCGAAACACCCCATCCAACACAATGATGAATCACCAGCCTTGTTACACAAATGAATCGATCATGCCAATCCGAGGAGAAGGCTTTGAGCATCTTCAGGAGATACCTAAGCCTCCTGCAGTTGTCAACAGACCTCCGGAGAAGAGACAGAGAGTGCCATCTGCCTACAACCGCTTTATCAAGGAAGAGATACAACGTATTAAAGCTGGAAATCCTGATATAAGCCACAGAGAGGCCTTTAGTGCTGCTGCAAAGAATTGGGCCCACTTCCCTCACATCCACTTCGGCCTTATGCCTGATCAACCCGTGAAGAAAACTAACATGCGCCAGCAGGAAGGAGATGACATGCTCGTGAAAGATGGATTTTTCAGTACTCCTGCCAATGTGGGTGTCTCCCCGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009909 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010093 GO:0010154 GO:0010158 GO:0010229 GO:0010450 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0090706 GO:0099402 GO:0140110 GO:1902183 GO:1903506 GO:1905392 GO:1905393 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

235

Amino Acids

26.3

Weight (kDa)

7.24

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	25 - 79	2.8e-27	YABBY, N-terminal
YABBY	PF04690	137 - 196	1.2e-37	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45190 AT2G45190
fragaria_vesca	FvH4_5g00320 FvH4_5g00320 FvH4_7g11260 FvH4_7g11260 FvH4_7g11260
malus_domestica	MD04G1083800.v1.1 MD06G1065700.v1.1 MD07G1117200.v1.1
prunus_persica	Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.5G075800_v2.0.a1
pyrus_communis	pycom02g17050 pycom04g07490 pycom07g10750
rosa_chinensis	RchiOBHm_Chr1g0349391 RchiOBHm_Chr7g0202251
rosa_laevigata	RLG00000003614 RLG00000028552
rosa_multiflora	Rmu_sc0001394.1_g000004 Rmu_sc0004208.1_g000005 Rmu_sc0018468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00254710 Rroxscaffold_4G00305570
rosa_rugosa	Rorug01G0203200 Rorug01G0203300 Rorug07G0069300 Rorug07G0069400
rosa_samantha	Rh1AG220600 Rh1BG186800 Rh1CG205700 Rh1DG216200 Rh7AG196600 Rh7BG197800 Rh7CG207700 Rh7DG203200
rosa_wichuraiana	Rw1G018760 Rw7G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	436
AciI	CCGC	1 cut(s)	472
AcoI	YGGCCR	1 cut(s)	175
AcuI	CTGAAG	2 cut(s)	275, 380
AfaI	GTAC	2 cut(s)	673, 701
AfiI	CCNNNNNNNGG	3 cut(s)	295, 374, 532
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	237, 269
AluBI	AGCT	3 cut(s)	11, 85, 506
AluI	AGCT	3 cut(s)	11, 85, 506
Alw26I	GTCTC	2 cut(s)	439, 697
Aor13HI	TCCGGA	1 cut(s)	436
AoxI	GGCC	4 cut(s)	175, 534, 561, 586
ApaI	GGGCCC	1 cut(s)	565
ApeKI	GCWGC	6 cut(s)	11, 14, 141, 183, 545, 548
AspLEI	GCGC	1 cut(s)	627
AspS9I	GGNCC	3 cut(s)	43, 561, 562
AsuHPI	GGTGA	2 cut(s)	242, 326
AvaII	GGWCC	1 cut(s)	43
BaeGI	GKGCMC	2 cut(s)	214, 565
BalI	TGGCCA	1 cut(s)	177
BanII	GRGCYC	1 cut(s)	565
BauI	CACGAG	1 cut(s)	650
BbvI	GCAGC	5 cut(s)	26, 153, 195, 532, 535
BccI	CCATC	3 cut(s)	322, 466, 653
BclI	TGATCA	1 cut(s)	598
BcoDI	GTCTC	2 cut(s)	439, 697
BfmI	CTRYAG	3 cut(s)	12, 181, 417
BisI	GCNGC	6 cut(s)	12, 15, 142, 184, 546, 549
BlsI	GCNGC	6 cut(s)	13, 16, 143, 185, 547, 550
BmcAI	AGTACT	1 cut(s)	673
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	3 cut(s)	43, 561, 562
BmiI	GGNNCC	1 cut(s)	563
BmsI	GCATC	2 cut(s)	26, 400
Bpu10I	CCTNAGC	1 cut(s)	408
Bsa29I	ATCGAT	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	373
BsaWI	WCCGGW	1 cut(s)	436
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 179, 209
Bsc4I	CCNNNNNNNGG	3 cut(s)	295, 374, 532
Bse3DI	GCAATG	1 cut(s)	97
BseAI	TCCGGA	1 cut(s)	436
BseCI	ATCGAT	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	4 cut(s)	20, 259, 314, 576
BseLI	CCNNNNNNNGG	3 cut(s)	295, 374, 532
BseMI	GCAATG	1 cut(s)	97
BseRI	GAGGAG	2 cut(s)	267, 390
BseSI	GKGCMC	2 cut(s)	214, 565
BseXI	GCAGC	5 cut(s)	26, 153, 195, 532, 535
BshFI	GGCC	4 cut(s)	177, 536, 563, 588
BshVI	ATCGAT	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	227, 437
BslI	CCNNNNNNNGG	3 cut(s)	295, 374, 532
BsmAI	GTCTC	2 cut(s)	439, 697
BsnI	GGCC	4 cut(s)	177, 536, 563, 588
Bsp120I	GGGCCC	1 cut(s)	561
Bsp1286I	GDGCHC	2 cut(s)	214, 565
Bsp13I	TCCGGA	1 cut(s)	436
Bsp143I	GATC	3 cut(s)	79, 360, 598
BspACI	CCGC	1 cut(s)	472
BspANI	GGCC	4 cut(s)	177, 536, 563, 588
BspDI	ATCGAT	1 cut(s)	359
BspEI	TCCGGA	1 cut(s)	436
BspLI	GGNNCC	1 cut(s)	563
BspMAI	CTGCAG	3 cut(s)	16, 185, 421
BsrDI	GCAATG	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	3 cut(s)	79, 360, 598
BssSI	CACGAG	1 cut(s)	650
Bst2BI	CACGAG	1 cut(s)	650
Bst4CI	ACNGT	4 cut(s)	28, 118, 160, 166
Bst6I	CTCTTC	2 cut(s)	437, 480
BstC8I	GCNNGC	1 cut(s)	629
BstDEI	CTNAG	1 cut(s)	408
BstENI	CCTNNNNNAGG	1 cut(s)	293
BstF5I	GGATG	4 cut(s)	20, 259, 314, 576
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	3 cut(s)	82, 363, 601
BstMAI	GTCTC	2 cut(s)	439, 697
BstMBI	GATC	3 cut(s)	79, 360, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 183, 542
BstNSI	RCATGY	3 cut(s)	208, 625, 649
BstSFI	CTRYAG	3 cut(s)	12, 181, 417
BstSLI	GKGCMC	2 cut(s)	214, 565
BstV1I	GCAGC	5 cut(s)	26, 153, 195, 532, 535
Bsu15I	ATCGAT	1 cut(s)	359
BsuRI	GGCC	4 cut(s)	177, 536, 563, 588
BsuTUI	ATCGAT	1 cut(s)	359
BtsCI	GGATG	4 cut(s)	20, 259, 314, 576
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	2 cut(s)	24, 178
Cac8I	GCNNGC	1 cut(s)	629
CfoI	GCGC	1 cut(s)	627
Cfr13I	GGNCC	3 cut(s)	43, 561, 562
ClaI	ATCGAT	1 cut(s)	359
Csp6I	GTAC	2 cut(s)	672, 700
CviAII	CATG	4 cut(s)	205, 364, 622, 646
CviQI	GTAC	2 cut(s)	672, 700
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	3 cut(s)	81, 362, 600
DpnII	GATC	3 cut(s)	79, 360, 598
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	2 cut(s)	437, 480
EarI	CTCTTC	2 cut(s)	437, 480
Eco147I	AGGCCT	1 cut(s)	536
Eco24I	GRGCYC	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	43
Eco57I	CTGAAG	2 cut(s)	275, 380
EcoNI	CCTNNNNNAGG	1 cut(s)	293
EcoT38I	GRGCYC	1 cut(s)	565
FaeI	CATG	4 cut(s)	208, 367, 625, 649
FaiI	YATR	7 cut(s)	93, 206, 365, 521, 593, 623, 647
FatI	CATG	4 cut(s)	204, 363, 621, 645
FbaI	TGATCA	1 cut(s)	598
Fnu4HI	GCNGC	6 cut(s)	12, 15, 142, 184, 546, 549
FokI	GGATG	4 cut(s)	7, 246, 301, 563
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	6 cut(s)	12, 15, 142, 184, 546, 549
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	6 cut(s)	12, 15, 142, 184, 546, 549
HaeIII	GGCC	4 cut(s)	177, 536, 563, 588
HapII	CCGG	2 cut(s)	227, 437
HhaI	GCGC	1 cut(s)	627
Hin1II	CATG	4 cut(s)	208, 367, 625, 649
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HincII	GTYRAC	2 cut(s)	202, 427
HindII	GTYRAC	2 cut(s)	202, 427
HinfI	GANTC	2 cut(s)	331, 356
HpaII	CCGG	2 cut(s)	227, 437
HphI	GGTGA	2 cut(s)	242, 326
Hpy166II	GTNNAC	2 cut(s)	202, 427
Hpy188I	TCNGA	2 cut(s)	305, 374
Hpy188III	TCNNGA	6 cut(s)	154, 293, 398, 437, 515, 652
Hpy8I	GTNNAC	2 cut(s)	202, 427
HpyAV	CCTTC	6 cut(s)	74, 224, 263, 299, 374, 629
HpyCH4III	ACNGT	4 cut(s)	28, 118, 160, 166
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	6 cut(s)	14, 102, 141, 183, 419, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 183, 542
HpyF3I	CTNAG	1 cut(s)	408
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	4 cut(s)	208, 367, 625, 649
HspAI	GCGC	1 cut(s)	625
Kpn2I	TCCGGA	1 cut(s)	436
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	3 cut(s)	79, 360, 598
Lsp1109I	GCAGC	5 cut(s)	26, 153, 195, 532, 535
LweI	GCATC	2 cut(s)	26, 400
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	3 cut(s)	110, 160, 344
MalI	GATC	3 cut(s)	81, 362, 600
MboI	GATC	3 cut(s)	79, 360, 598
MboII	GAAGA	7 cut(s)	209, 212, 259, 386, 454, 497, 622
MhlI	GDGCHC	2 cut(s)	214, 565
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	1 cut(s)	556
MluNI	TGGCCA	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	8 cut(s)	234, 288, 289, 368, 423, 444, 526, 582
Mox20I	TGGCCA	1 cut(s)	177
MroI	TCCGGA	1 cut(s)	436
MscI	TGGCCA	1 cut(s)	177
MseI	TTAA	2 cut(s)	33, 501
MslI	CAYNNNNRTG	2 cut(s)	326, 650
Msp20I	TGGCCA	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	2 cut(s)	227, 437
MwoI	GCNNNNNNNGC	3 cut(s)	138, 183, 542
NdeII	GATC	3 cut(s)	79, 360, 598
NlaIII	CATG	4 cut(s)	208, 367, 625, 649
NlaIV	GGNNCC	1 cut(s)	563
NmuCI	GTSAC	2 cut(s)	110, 160
NspI	RCATGY	3 cut(s)	208, 625, 649
PceI	AGGCCT	1 cut(s)	536
PciI	ACATGT	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	331, 356
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	6 cut(s)	13, 16, 143, 185, 547, 550
PscI	ACATGT	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	563
PspOMI	GGGCCC	1 cut(s)	561
PspPI	GGNCC	3 cut(s)	43, 561, 562
PstI	CTGCAG	3 cut(s)	16, 185, 421
PsyI	GACNNNGTC	1 cut(s)	116
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	2 cut(s)	673, 701
RsaNI	GTAC	2 cut(s)	672, 700
RseI	CAYNNNNRTG	2 cut(s)	326, 650
SaqAI	TTAA	2 cut(s)	33, 501
SatI	GCNGC	6 cut(s)	12, 15, 142, 184, 546, 549
Sau3AI	GATC	3 cut(s)	79, 360, 598
Sau96I	GGNCC	3 cut(s)	43, 561, 562
ScaI	AGTACT	1 cut(s)	673
SduI	GDGCHC	2 cut(s)	214, 565
SetI	ASST	9 cut(s)	13, 66, 87, 192, 255, 409, 436, 499, 508
SfaNI	GCATC	2 cut(s)	26, 400
SfcI	CTRYAG	3 cut(s)	12, 181, 417
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	2 cut(s)	326, 650
Sse9I	AATT	1 cut(s)	556
SseBI	AGGCCT	1 cut(s)	536
SsiI	CCGC	1 cut(s)	472
StuI	AGGCCT	1 cut(s)	536
TaaI	ACNGT	4 cut(s)	28, 118, 160, 166
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	2 cut(s)	169, 359
TasI	AATT	1 cut(s)	556
TatI	WGTACW	1 cut(s)	671
TfiI	GAWTC	2 cut(s)	331, 356
Tru1I	TTAA	2 cut(s)	33, 501
Tru9I	TTAA	2 cut(s)	33, 501
TscAI	CASTG	2 cut(s)	31, 185
TseFI	GTSAC	2 cut(s)	110, 160
TseI	GCWGC	6 cut(s)	11, 14, 141, 183, 545, 548
Tsp45I	GTSAC	2 cut(s)	110, 160
TspDTI	ATGAA	2 cut(s)	344, 369
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	2 cut(s)	31, 185
Tth111I	GACNNNGTC	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	43
XagI	CCTNNNNNAGG	1 cut(s)	293
XceI	RCATGY	3 cut(s)	208, 625, 649
ZrmI	AGTACT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.