Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002502

Physical Location & Seq

Genomic Coordinates Forward (+)

14530985 .. 14533249

Gene Structure 2265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g17050.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTCTTCAGCTGCAACCTCATCCACTGTCTTTAATTCACCGGACCAACAACAACACCTCCTCTCTCCCACCGATCAGCTCTGTTATGTCCATTGCAACTTCTGTGACACCGTCCTTGCTGTGAGCGTTCCTTGCAGCAGTTTGTTTAAGACTGTGACTGTTCGATGTGGTCACTGCAGCAACCTTCTTTCCGTCAACATGCGTGCCCTTCTTCTTCCGCCTCCTAATAATAATAACCAACTTCACCTTCCACATCCTTTCTTCTCCACTCCTCACAATCTCCTTCAGGAGGAGATCCGGAACACCCCATCAAACACAATCACGAATCACCAGCCAAATTATACAAATGAATCAGCCATGCCAATCCGAGGAGGAGGCTTTGATCATCATCAGGAGATACCTAAGCCTCCTGCAGTTGTCAATAGACCTCCGGAGAAGAGACAGAGAGTGCCATCTGCCTACAACCGCTTTATCAAGGAGGAGATACAACGTATTAAAGCTGGAAATCCTGATATAAGCCACAGAGAGGCCTTCAGTGCTGCTGCAAAGAATTGGGCCCACTTCCCTCACATCCACTTCGGACTTCTGCCTGATCAACCCGTGAAGAAAACTAACATCCGCCAGCAGGAAGGAGATGACGTCCTCATGAAAGATGGATTTTTCAGTACTCCTGCCAATGTGGGTGTCATCCCCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009909 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010093 GO:0010154 GO:0010158 GO:0010229 GO:0010450 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0090706 GO:0099402 GO:0140110 GO:1902183 GO:1903506 GO:1905392 GO:1905393 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

233

Amino Acids

25.94

Weight (kDa)

8.25

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45190 AT2G45190
fragaria_vesca	FvH4_5g00320 FvH4_5g00320 FvH4_7g11260 FvH4_7g11260 FvH4_7g11260
malus_domestica	MD04G1083800.v1.1 MD06G1065700.v1.1 MD07G1117200.v1.1
prunus_persica	Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.5G075800_v2.0.a1
pyrus_communis	pycom02g17050 pycom04g07490 pycom07g10750
rosa_chinensis	RchiOBHm_Chr1g0349391 RchiOBHm_Chr7g0202251
rosa_laevigata	RLG00000003614 RLG00000028552
rosa_multiflora	Rmu_sc0001394.1_g000004 Rmu_sc0004208.1_g000005 Rmu_sc0018468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00254710 Rroxscaffold_4G00305570
rosa_rugosa	Rorug01G0203200 Rorug01G0203300 Rorug07G0069300 Rorug07G0069400
rosa_samantha	Rh1AG220600 Rh1BG186800 Rh1CG205700 Rh1DG216200 Rh7AG196600 Rh7BG197800 Rh7CG207700 Rh7DG203200
rosa_wichuraiana	Rw1G018760 Rw7G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	642
AccIII	TCCGGA	2 cut(s)	297, 430
AciI	CCGC	3 cut(s)	218, 466, 619
AclWI	GGATC	1 cut(s)	289
AcuI	CTGAAG	2 cut(s)	269, 517
AcyI	GRCGYC	1 cut(s)	639
AfaI	GTAC	1 cut(s)	667
AfiI	CCNNNNNNNGG	4 cut(s)	289, 368, 526, 625
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	3 cut(s)	11, 79, 500
AluI	AGCT	3 cut(s)	11, 79, 500
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	1 cut(s)	289
Aor13HI	TCCGGA	2 cut(s)	297, 430
AoxI	GGCC	2 cut(s)	528, 555
ApaI	GGGCCC	1 cut(s)	559
ApeKI	GCWGC	5 cut(s)	11, 135, 177, 539, 542
AspS9I	GGNCC	3 cut(s)	43, 555, 556
AsuHPI	GGTGA	3 cut(s)	30, 236, 320
AvaII	GGWCC	1 cut(s)	43
BaeGI	GKGCMC	2 cut(s)	208, 559
BanII	GRGCYC	1 cut(s)	559
BbvI	GCAGC	4 cut(s)	147, 189, 526, 529
BccI	CCATC	3 cut(s)	316, 460, 647
BclI	TGATCA	2 cut(s)	382, 592
BcoDI	GTCTC	1 cut(s)	433
BfmI	CTRYAG	2 cut(s)	175, 411
BisI	GCNGC	5 cut(s)	12, 136, 178, 540, 543
BlsI	GCNGC	5 cut(s)	13, 137, 179, 541, 544
BmcAI	AGTACT	1 cut(s)	667
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	3 cut(s)	43, 555, 556
BmiI	GGNNCC	1 cut(s)	557
Bpu10I	CCTNAGC	1 cut(s)	402
BsaBI	GATNNNNATC	1 cut(s)	387
BsaHI	GRCGYC	1 cut(s)	639
BsaJI	CCNNGG	1 cut(s)	367
BsaWI	WCCGGW	3 cut(s)	40, 297, 430
BsaXI	ACNNNNNCTCC	4 cut(s)	42, 72, 624, 654
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 368, 526, 625
Bse3DI	GCAATG	1 cut(s)	91
Bse8I	GATNNNNATC	1 cut(s)	387
BseAI	TCCGGA	2 cut(s)	297, 430
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	5 cut(s)	20, 253, 570, 615, 687
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	4 cut(s)	289, 368, 526, 625
BseMI	GCAATG	1 cut(s)	91
BseRI	GAGGAG	6 cut(s)	50, 261, 305, 384, 387, 494
BseSI	GKGCMC	2 cut(s)	208, 559
BseXI	GCAGC	4 cut(s)	147, 189, 526, 529
BshFI	GGCC	2 cut(s)	530, 557
BsiSI	CCGG	3 cut(s)	41, 298, 431
BslI	CCNNNNNNNGG	4 cut(s)	289, 368, 526, 625
BsmAI	GTCTC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	530, 557
Bsp120I	GGGCCC	1 cut(s)	555
Bsp1286I	GDGCHC	2 cut(s)	208, 559
Bsp13I	TCCGGA	2 cut(s)	297, 430
Bsp143I	GATC	4 cut(s)	73, 294, 382, 592
BspACI	CCGC	3 cut(s)	218, 466, 619
BspANI	GGCC	2 cut(s)	530, 557
BspEI	TCCGGA	2 cut(s)	297, 430
BspHI	TCATGA	1 cut(s)	645
BspLI	GGNNCC	1 cut(s)	557
BspMAI	CTGCAG	2 cut(s)	179, 415
BspPI	GGATC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	4 cut(s)	73, 294, 382, 592
BssNI	GRCGYC	1 cut(s)	639
Bst4CI	ACNGT	4 cut(s)	28, 112, 154, 160
Bst6I	CTCTTC	1 cut(s)	431
BstACI	GRCGYC	1 cut(s)	639
BstC8I	GCNNGC	2 cut(s)	204, 623
BstDEI	CTNAG	1 cut(s)	402
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstF5I	GGATG	5 cut(s)	20, 253, 570, 615, 687
BstKTI	GATC	4 cut(s)	76, 297, 385, 595
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	4 cut(s)	73, 294, 382, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 536
BstNSI	RCATGY	1 cut(s)	202
BstSFI	CTRYAG	2 cut(s)	175, 411
BstSLI	GKGCMC	2 cut(s)	208, 559
BstV1I	GCAGC	4 cut(s)	147, 189, 526, 529
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	530, 557
BtsCI	GGATG	5 cut(s)	20, 253, 570, 615, 687
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	3 cut(s)	24, 172, 541
Cac8I	GCNNGC	2 cut(s)	204, 623
CciI	TCATGA	1 cut(s)	645
Cfr13I	GGNCC	3 cut(s)	43, 555, 556
Csp6I	GTAC	1 cut(s)	666
CviAII	CATG	3 cut(s)	199, 358, 646
CviQI	GTAC	1 cut(s)	666
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	4 cut(s)	75, 296, 384, 594
DpnII	GATC	4 cut(s)	73, 294, 382, 592
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
EciI	GGCGGA	2 cut(s)	207, 608
Eco147I	AGGCCT	1 cut(s)	530
Eco24I	GRGCYC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	43
Eco57I	CTGAAG	2 cut(s)	269, 517
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	559
FaeI	CATG	3 cut(s)	202, 361, 649
FaiI	YATR	6 cut(s)	87, 200, 342, 359, 515, 647
FatI	CATG	3 cut(s)	198, 357, 645
FbaI	TGATCA	2 cut(s)	382, 592
Fnu4HI	GCNGC	5 cut(s)	12, 136, 178, 540, 543
FokI	GGATG	5 cut(s)	7, 240, 557, 602, 674
FriOI	GRGCYC	1 cut(s)	559
Fsp4HI	GCNGC	5 cut(s)	12, 136, 178, 540, 543
GluI	GCNGC	5 cut(s)	12, 136, 178, 540, 543
HaeIII	GGCC	2 cut(s)	530, 557
HapII	CCGG	3 cut(s)	41, 298, 431
Hin1I	GRCGYC	1 cut(s)	639
Hin1II	CATG	3 cut(s)	202, 361, 649
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	325, 350
HpaII	CCGG	3 cut(s)	41, 298, 431
HphI	GGTGA	3 cut(s)	30, 236, 320
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	2 cut(s)	368, 581
Hpy188III	TCNNGA	7 cut(s)	287, 298, 322, 392, 431, 509, 646
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	6 cut(s)	194, 218, 257, 293, 541, 623
HpyCH4III	ACNGT	4 cut(s)	28, 112, 154, 160
HpyCH4IV	ACGT	2 cut(s)	490, 639
HpyCH4V	TGCA	6 cut(s)	14, 96, 135, 177, 413, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 536
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	2 cut(s)	490, 639
Hsp92I	GRCGYC	1 cut(s)	639
Hsp92II	CATG	3 cut(s)	202, 361, 649
Kpn2I	TCCGGA	2 cut(s)	297, 430
Ksp22I	TGATCA	2 cut(s)	382, 592
Kzo9I	GATC	4 cut(s)	73, 294, 382, 592
Lsp1109I	GCAGC	4 cut(s)	147, 189, 526, 529
MaeII	ACGT	2 cut(s)	490, 639
MaeIII	GTNAC	3 cut(s)	104, 154, 170
MalI	GATC	4 cut(s)	75, 296, 384, 594
MboI	GATC	4 cut(s)	73, 294, 382, 592
MboII	GAAGA	5 cut(s)	203, 206, 253, 448, 616
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	2 cut(s)	208, 559
MluCI	AATT	3 cut(s)	34, 337, 550
MroI	TCCGGA	2 cut(s)	297, 430
MseI	TTAA	3 cut(s)	33, 147, 495
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	3 cut(s)	41, 298, 431
MwoI	GCNNNNNNNGC	2 cut(s)	132, 536
NdeII	GATC	4 cut(s)	73, 294, 382, 592
NlaIII	CATG	3 cut(s)	202, 361, 649
NlaIV	GGNNCC	1 cut(s)	557
NmuCI	GTSAC	3 cut(s)	104, 154, 170
NspI	RCATGY	1 cut(s)	202
PagI	TCATGA	1 cut(s)	645
PceI	AGGCCT	1 cut(s)	530
PfeI	GAWTC	2 cut(s)	325, 350
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	5 cut(s)	13, 137, 179, 541, 544
PspN4I	GGNNCC	1 cut(s)	557
PspOMI	GGGCCC	1 cut(s)	555
PspPI	GGNCC	3 cut(s)	43, 555, 556
PstI	CTGCAG	2 cut(s)	179, 415
PsuI	RGATCY	1 cut(s)	294
PsyI	GACNNNGTC	1 cut(s)	110
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	1 cut(s)	667
RsaNI	GTAC	1 cut(s)	666
SaqAI	TTAA	3 cut(s)	33, 147, 495
SatI	GCNGC	5 cut(s)	12, 136, 178, 540, 543
Sau3AI	GATC	4 cut(s)	73, 294, 382, 592
Sau96I	GGNCC	3 cut(s)	43, 555, 556
ScaI	AGTACT	1 cut(s)	667
SduI	GDGCHC	2 cut(s)	208, 559
SfcI	CTRYAG	2 cut(s)	175, 411
SinI	GGWCC	1 cut(s)	43
Sse9I	AATT	3 cut(s)	34, 337, 550
SseBI	AGGCCT	1 cut(s)	530
SsiI	CCGC	3 cut(s)	218, 466, 619
StuI	AGGCCT	1 cut(s)	530
TaaI	ACNGT	4 cut(s)	28, 112, 154, 160
TaiI	ACGT	2 cut(s)	493, 642
TaqI	TCGA	1 cut(s)	163
TasI	AATT	3 cut(s)	34, 337, 550
TatI	WGTACW	1 cut(s)	665
TfiI	GAWTC	2 cut(s)	325, 350
Tru1I	TTAA	3 cut(s)	33, 147, 495
Tru9I	TTAA	3 cut(s)	33, 147, 495
TscAI	CASTG	3 cut(s)	31, 179, 541
TseFI	GTSAC	3 cut(s)	104, 154, 170
TseI	GCWGC	5 cut(s)	11, 135, 177, 539, 542
Tsp45I	GTSAC	3 cut(s)	104, 154, 170
TspDTI	ATGAA	2 cut(s)	363, 662
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	3 cut(s)	31, 179, 541
Tth111I	GACNNNGTC	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	43
XagI	CCTNNNNNAGG	1 cut(s)	287
XceI	RCATGY	1 cut(s)	202
ZraI	GACGTC	1 cut(s)	640
ZrmI	AGTACT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.