Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002502

Physical Location & Seq

Genomic Coordinates Reverse (-)

10483148 .. 10486294

Gene Structure 3147 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g11260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCTGCTGCTGCATCTTCCAACACTGTCTTTTCACCACCGGACCACCTCTCTCCCTCCGATCAGCTCTGCTATGTTCACTGCAACTTTTGTGACACTGTCCTCGCGGTGAGCGTTCCTTGCAGCAGTTTGTTCAAGACTGTGACGGTCAGATGCGGCCATTGCAGCAACCTTCTCTCAGTTAACATGCGGGGCCTTCTTCTTCCTGCTGCAGCTAACCTCGGACATTCTTTCTTCACTCCTCAGAATCTCCTGGAGGAGATCCGAAACGCCCCATCAAACACGTTCACCAATCAGCCTAACATGATGATGAACGAATCATTTATGCCAATGATTCGAGGAGTTGAGGAGATACCTAAGCCTCCACCTGTTGTTAACAGACCTCCGGAGAAGAGACAGCGAGTGCCATCTGCCTACAACCGCTTCATCAAGGAAGAGATACAACGTATCAAAGCTGGAAACCCTGATATAAGCCACAGAGAGGCATTCAGTGCTGCTGCCAAGAATTGGGCCCACTTCCCTCACATCCATTTTGGCCTGATGCCTGATCAACCCGTGAAGAAAGCCAATATGCGCCAGGATGGAGAGGACATGCTCATCAAAGACAATGGATTTTTCAATGCTGCTGCAAATTTGGGCGTCTCCCCCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009909 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010093 GO:0010154 GO:0010158 GO:0010229 GO:0010450 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0090706 GO:0099402 GO:0140110 GO:1902183 GO:1903506 GO:1905392 GO:1905393 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

218

Amino Acids

24.07

Weight (kDa)

8.24

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	19 - 70	7.1e-30	YABBY, N-terminal
YABBY	PF04690	120 - 179	5e-38	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45190 AT2G45190
fragaria_vesca	FvH4_5g00320 FvH4_5g00320 FvH4_7g11260 FvH4_7g11260 FvH4_7g11260
malus_domestica	MD04G1083800.v1.1 MD06G1065700.v1.1 MD07G1117200.v1.1
prunus_persica	Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.5G075800_v2.0.a1
pyrus_communis	pycom02g17050 pycom04g07490 pycom07g10750
rosa_chinensis	RchiOBHm_Chr1g0349391 RchiOBHm_Chr7g0202251
rosa_laevigata	RLG00000003614 RLG00000028552
rosa_multiflora	Rmu_sc0001394.1_g000004 Rmu_sc0004208.1_g000005 Rmu_sc0018468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00254710 Rroxscaffold_4G00305570
rosa_rugosa	Rorug01G0203200 Rorug01G0203300 Rorug07G0069300 Rorug07G0069400
rosa_samantha	Rh1AG220600 Rh1BG186800 Rh1CG205700 Rh1DG216200 Rh7AG196600 Rh7BG197800 Rh7CG207700 Rh7DG203200
rosa_wichuraiana	Rw1G018760 Rw7G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	507
AccII	CGCG	1 cut(s)	107
AccIII	TCCGGA	1 cut(s)	385
AciI	CCGC	4 cut(s)	107, 156, 190, 421
AclWI	GGATC	1 cut(s)	256
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	631
AcyI	GRCGYC	1 cut(s)	639
AfiI	CCNNNNNNNGG	2 cut(s)	481, 507
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	2 cut(s)	136, 619
AjnI	CCWGG	2 cut(s)	252, 576
AluBI	AGCT	3 cut(s)	67, 215, 455
AluI	AGCT	3 cut(s)	67, 215, 455
Alw26I	GTCTC	2 cut(s)	388, 646
AlwI	GGATC	1 cut(s)	256
Aor13HI	TCCGGA	1 cut(s)	385
AoxI	GGCC	4 cut(s)	157, 193, 510, 535
ApaI	GGGCCC	1 cut(s)	514
ApoI	RAATTY	1 cut(s)	631
AspLEI	GCGC	1 cut(s)	576
AspS9I	GGNCC	4 cut(s)	43, 193, 510, 511
AsuHPI	GGTGA	3 cut(s)	27, 121, 280
AvaII	GGWCC	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	514
BbvI	GCAGC	8 cut(s)	135, 177, 196, 224, 481, 484, 610, 613
BccI	CCATC	3 cut(s)	283, 415, 575
BciT130I	CCWGG	2 cut(s)	254, 578
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	2 cut(s)	388, 646
BfmI	CTRYAG	1 cut(s)	210
Bme1390I	CCNGG	2 cut(s)	254, 578
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	4 cut(s)	43, 193, 510, 511
BmiI	GGNNCC	2 cut(s)	194, 512
BmrFI	CCNGG	2 cut(s)	254, 578
BmsI	GCATC	3 cut(s)	23, 143, 531
BpmI	CTGGAG	1 cut(s)	275
Bpu10I	CCTNAGC	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	639
BsaJI	CCNNGG	1 cut(s)	220
BsaWI	WCCGGW	2 cut(s)	40, 385
Bsc4I	CCNNNNNNNGG	2 cut(s)	481, 507
Bse3DI	GCAATG	1 cut(s)	160
BseAI	TCCGGA	1 cut(s)	385
BseBI	CCWGG	2 cut(s)	254, 578
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	525, 586
BseLI	CCNNNNNNNGG	2 cut(s)	481, 507
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	192, 257
BseRI	GAGGAG	4 cut(s)	231, 272, 354, 362
BseSI	GKGCMC	1 cut(s)	514
BseXI	GCAGC	8 cut(s)	135, 177, 196, 224, 481, 484, 610, 613
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	4 cut(s)	159, 195, 512, 537
BsiSI	CCGG	2 cut(s)	41, 386
BslI	CCNNNNNNNGG	2 cut(s)	481, 507
BsmAI	GTCTC	2 cut(s)	388, 646
BsmBI	CGTCTC	1 cut(s)	646
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	4 cut(s)	159, 195, 512, 537
Bsp120I	GGGCCC	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp13I	TCCGGA	1 cut(s)	385
Bsp143I	GATC	3 cut(s)	61, 261, 547
BspACI	CCGC	4 cut(s)	107, 156, 190, 421
BspANI	GGCC	4 cut(s)	159, 195, 512, 537
BspCNI	CTCAG	2 cut(s)	191, 256
BspEI	TCCGGA	1 cut(s)	385
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	2 cut(s)	194, 512
BspMAI	CTGCAG	1 cut(s)	214
BspPI	GGATC	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	3 cut(s)	61, 261, 547
BssNI	GRCGYC	1 cut(s)	639
Bst2UI	CCWGG	2 cut(s)	254, 578
Bst4CI	ACNGT	4 cut(s)	28, 100, 142, 148
Bst6I	CTCTTC	2 cut(s)	386, 429
BstACI	GRCGYC	1 cut(s)	639
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstDEI	CTNAG	3 cut(s)	178, 243, 357
BstF5I	GGATG	2 cut(s)	525, 586
BstFNI	CGCG	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	576
BstKTI	GATC	3 cut(s)	64, 264, 550
BstMAI	GTCTC	2 cut(s)	388, 646
BstMBI	GATC	3 cut(s)	61, 261, 547
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 162, 165, 491
BstNI	CCWGG	2 cut(s)	254, 578
BstNSI	RCATGY	2 cut(s)	190, 595
BstSCI	CCNGG	2 cut(s)	252, 576
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	514
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	8 cut(s)	135, 177, 196, 224, 481, 484, 610, 613
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	4 cut(s)	159, 195, 512, 537
BtsCI	GGATG	2 cut(s)	525, 586
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	4 cut(s)	24, 79, 96, 496
CfoI	GCGC	1 cut(s)	576
Cfr13I	GGNCC	4 cut(s)	43, 193, 510, 511
CseI	GACGC	1 cut(s)	628
CviAII	CATG	3 cut(s)	187, 304, 592
DdeI	CTNAG	3 cut(s)	178, 243, 357
DpnI	GATC	3 cut(s)	63, 263, 549
DpnII	GATC	3 cut(s)	61, 261, 547
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	2 cut(s)	386, 429
EarI	CTCTTC	2 cut(s)	386, 429
Eco24I	GRGCYC	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	43
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	252, 576
EcoT38I	GRGCYC	1 cut(s)	514
Esp3I	CGTCTC	1 cut(s)	646
FaeI	CATG	3 cut(s)	190, 307, 595
FaiI	YATR	7 cut(s)	75, 188, 305, 326, 470, 572, 593
FatI	CATG	3 cut(s)	186, 303, 591
FauI	CCCGC	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	547
FokI	GGATG	2 cut(s)	512, 593
FriOI	GRGCYC	1 cut(s)	514
GlaI	GCGC	1 cut(s)	575
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	4 cut(s)	159, 195, 512, 537
HapII	CCGG	2 cut(s)	41, 386
HgaI	GACGC	1 cut(s)	628
HhaI	GCGC	1 cut(s)	576
Hin1I	GRCGYC	1 cut(s)	639
Hin1II	CATG	3 cut(s)	190, 307, 595
Hin6I	GCGC	1 cut(s)	574
HinP1I	GCGC	1 cut(s)	574
HincII	GTYRAC	2 cut(s)	184, 376
HindII	GTYRAC	2 cut(s)	184, 376
HinfI	GANTC	3 cut(s)	247, 317, 334
HpaI	GTTAAC	2 cut(s)	184, 376
HpaII	CCGG	2 cut(s)	41, 386
HphI	GGTGA	3 cut(s)	27, 121, 280
Hpy166II	GTNNAC	4 cut(s)	79, 184, 288, 376
Hpy188I	TCNGA	5 cut(s)	61, 152, 224, 246, 266
Hpy188III	TCNNGA	2 cut(s)	136, 386
Hpy8I	GTNNAC	4 cut(s)	79, 184, 288, 376
HpyAV	CCTTC	2 cut(s)	182, 206
HpyCH4III	ACNGT	4 cut(s)	28, 100, 142, 148
HpyCH4IV	ACGT	2 cut(s)	284, 445
HpyCH4V	TGCA	6 cut(s)	14, 84, 123, 165, 212, 629
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 162, 165, 491
HpyF3I	CTNAG	3 cut(s)	178, 243, 357
HpySE526I	ACGT	2 cut(s)	284, 445
Hsp92I	GRCGYC	1 cut(s)	639
Hsp92II	CATG	3 cut(s)	190, 307, 595
HspAI	GCGC	1 cut(s)	574
Kpn2I	TCCGGA	1 cut(s)	385
Ksp22I	TGATCA	1 cut(s)	547
KspAI	GTTAAC	2 cut(s)	184, 376
Kzo9I	GATC	3 cut(s)	61, 261, 547
Lsp1109I	GCAGC	8 cut(s)	135, 177, 196, 224, 481, 484, 610, 613
LweI	GCATC	3 cut(s)	23, 143, 531
MaeII	ACGT	2 cut(s)	284, 445
MaeIII	GTNAC	2 cut(s)	92, 142
MalI	GATC	3 cut(s)	63, 263, 549
MboI	GATC	3 cut(s)	61, 261, 547
MboII	GAAGA	7 cut(s)	9, 191, 194, 226, 403, 446, 571
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	514
MluCI	AATT	2 cut(s)	505, 631
MmeI	TCCRAC	1 cut(s)	45
MroI	TCCGGA	1 cut(s)	385
MseI	TTAA	2 cut(s)	183, 375
MslI	CAYNNNNRTG	1 cut(s)	308
MspI	CCGG	2 cut(s)	41, 386
MspR9I	CCNGG	2 cut(s)	254, 578
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	2 cut(s)	254, 578
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	4 cut(s)	120, 162, 165, 491
NdeII	GATC	3 cut(s)	61, 261, 547
NlaIII	CATG	3 cut(s)	190, 307, 595
NlaIV	GGNNCC	2 cut(s)	194, 512
NmuCI	GTSAC	2 cut(s)	92, 142
NspI	RCATGY	2 cut(s)	190, 595
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	485
PfeI	GAWTC	3 cut(s)	247, 317, 334
PflFI	GACNNNGTC	1 cut(s)	98
PflMI	CCANNNNNTGG	1 cut(s)	507
PfoI	TCCNGGA	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	252, 576
PspGI	CCWGG	2 cut(s)	252, 576
PspN4I	GGNNCC	2 cut(s)	194, 512
PspOMI	GGGCCC	1 cut(s)	510
PspPI	GGNCC	4 cut(s)	43, 193, 510, 511
PstI	CTGCAG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	261
PsyI	GACNNNGTC	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	183, 375
Sau3AI	GATC	3 cut(s)	61, 261, 547
Sau96I	GGNCC	4 cut(s)	43, 193, 510, 511
ScrFI	CCNGG	2 cut(s)	254, 578
SduI	GDGCHC	1 cut(s)	514
SfaNI	GCATC	3 cut(s)	23, 143, 531
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	308
Sse9I	AATT	2 cut(s)	505, 631
SsiI	CCGC	4 cut(s)	107, 156, 190, 421
StyD4I	CCNGG	2 cut(s)	252, 576
TaaI	ACNGT	4 cut(s)	28, 100, 142, 148
TaiI	ACGT	2 cut(s)	287, 448
TaqI	TCGA	1 cut(s)	337
TasI	AATT	2 cut(s)	505, 631
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	3 cut(s)	247, 317, 334
Tru1I	TTAA	2 cut(s)	183, 375
Tru9I	TTAA	2 cut(s)	183, 375
TscAI	CASTG	4 cut(s)	31, 86, 103, 496
TseFI	GTSAC	2 cut(s)	92, 142
Tsp45I	GTSAC	2 cut(s)	92, 142
TspDTI	ATGAA	2 cut(s)	326, 415
TspRI	CASTG	4 cut(s)	31, 86, 103, 496
Tth111I	GACNNNGTC	1 cut(s)	98
Van91I	CCANNNNNTGG	1 cut(s)	507
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	1 cut(s)	631
XceI	RCATGY	2 cut(s)	190, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.