Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002502

Physical Location & Seq

Genomic Coordinates Forward (+)

8982627 .. 8985763

Gene Structure 3137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G075800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTCATCATCCTCTTCTGCTTCAACCTTGTCCCTCGACCACCTCCCTCCTTCCGAGCAGCTTTGCTATGTCCACTGCAACATTTGCGACACTGTCCTTGCGGTGAGTGTTCCTTGCACAAGTTTGTTCAAGACTGTGACGGTGCGATGCGGGCACTGCACCAATCTGCTTCCAGTGAACATGCGTGGGCTGCTTCTCCCTTCGCCCAATCAGTTTCATCATCTTGGTCACTCTTTCTTCTCATCCCCTAATAATTCCCATAATCTTCTGGAAGAGATACCAAATCCAGCCCCAAACTTTCTGATGAACCAAACTAGCGTGAATGACTTTGCTGTACGACCAAGAGGAGGAGCTGATGAACTTCCAAGGCCCCCAGCTATTACCAGACCCCCGGAGAAGAGACAGAGAGTCCCCTCTGCGTACAACCGTTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCTGATATATCCCATAGAGAGGCCTTCAGTGCAGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCTGACCAGACTGTGAAGAAGACAAACGTGCGCCAGCAGGAAGGAGAGGATGTTCTGATGAAAGATGGGTTTTTTGCTTCAGCTAATAACGTTCGTGTCTCTCCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

220

Amino Acids

24.41

Weight (kDa)

8.58

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45190 AT2G45190
fragaria_vesca	FvH4_5g00320 FvH4_5g00320 FvH4_7g11260 FvH4_7g11260 FvH4_7g11260
malus_domestica	MD04G1083800.v1.1 MD06G1065700.v1.1 MD07G1117200.v1.1
prunus_persica	Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.5G075800_v2.0.a1
pyrus_communis	pycom02g17050 pycom04g07490 pycom07g10750
rosa_chinensis	RchiOBHm_Chr1g0349391 RchiOBHm_Chr7g0202251
rosa_laevigata	RLG00000003614 RLG00000028552
rosa_multiflora	Rmu_sc0001394.1_g000004 Rmu_sc0004208.1_g000005 Rmu_sc0018468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00254710 Rroxscaffold_4G00305570
rosa_rugosa	Rorug01G0203200 Rorug01G0203300 Rorug07G0069300 Rorug07G0069400
rosa_samantha	Rh1AG220600 Rh1BG186800 Rh1CG205700 Rh1DG216200 Rh7AG196600 Rh7BG197800 Rh7CG207700 Rh7DG203200
rosa_wichuraiana	Rw1G018760 Rw7G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	101, 150
AclI	AACGTT	1 cut(s)	639
AclWI	GGATC	1 cut(s)	439
AcuI	CTGAAG	2 cut(s)	478, 612
AfaI	GTAC	2 cut(s)	336, 422
AfiI	CCNNNNNNNGG	2 cut(s)	347, 487
AgsI	TTSAA	2 cut(s)	24, 130
AhdI	GACNNNNNGTC	1 cut(s)	407
AloI	GAACNNNNNNTCC	2 cut(s)	585, 617
AluBI	AGCT	5 cut(s)	61, 353, 377, 503, 632
AluI	AGCT	5 cut(s)	61, 353, 377, 503, 632
Alw26I	GTCTC	3 cut(s)	394, 548, 652
AlwI	GGATC	1 cut(s)	439
AoxI	GGCC	3 cut(s)	368, 489, 516
ApaI	GGGCCC	1 cut(s)	520
ApeKI	GCWGC	4 cut(s)	58, 190, 500, 503
AspLEI	GCGC	1 cut(s)	582
AspS9I	GGNCC	3 cut(s)	369, 516, 517
AsuC2I	CCSGG	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	115
BaeGI	GKGCMC	2 cut(s)	156, 520
BanII	GRGCYC	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	575
BbvI	GCAGC	4 cut(s)	70, 177, 490, 512
BccI	CCATC	1 cut(s)	608
BcnI	CCSGG	1 cut(s)	392
BcoDI	GTCTC	3 cut(s)	394, 548, 652
BfaI	CTAG	1 cut(s)	315
BisI	GCNGC	4 cut(s)	59, 191, 501, 504
BlsI	GCNGC	4 cut(s)	60, 192, 502, 505
Bme1390I	CCNGG	1 cut(s)	392
BmeRI	GACNNNNNGTC	1 cut(s)	407
BmgT120I	GGNCC	3 cut(s)	369, 516, 517
BmiI	GGNNCC	2 cut(s)	371, 518
BmrFI	CCNGG	1 cut(s)	392
BmsI	GCATC	2 cut(s)	137, 462
BpiI	GAAGAC	1 cut(s)	575
BpuMI	CCSGG	1 cut(s)	392
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	365, 390
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 487
Bse1I	ACTGG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	365, 390
BseGI	GGATG	3 cut(s)	8, 242, 604
BseLI	CCNNNNNNNGG	2 cut(s)	347, 487
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	2 cut(s)	360, 363
BseSI	GKGCMC	2 cut(s)	156, 520
BseXI	GCAGC	4 cut(s)	70, 177, 490, 512
BseYI	CCCAGC	1 cut(s)	373
BsgI	GTGCAG	2 cut(s)	142, 519
BshFI	GGCC	3 cut(s)	370, 491, 518
BsiSI	CCGG	1 cut(s)	392
BslFI	GGGAC	2 cut(s)	16, 395
BslI	CCNNNNNNNGG	2 cut(s)	347, 487
BsmAI	GTCTC	3 cut(s)	394, 548, 652
BsmFI	GGGAC	2 cut(s)	16, 395
BsnI	GGCC	3 cut(s)	370, 491, 518
Bso31I	GGTCTC	1 cut(s)	548
Bsp120I	GGGCCC	1 cut(s)	516
Bsp1286I	GDGCHC	2 cut(s)	156, 520
Bsp143I	GATC	1 cut(s)	444
BspACI	CCGC	2 cut(s)	101, 150
BspANI	GGCC	3 cut(s)	370, 491, 518
BspLI	GGNNCC	2 cut(s)	371, 518
BspPI	GGATC	1 cut(s)	439
BspTNI	GGTCTC	1 cut(s)	548
BsrI	ACTGG	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	365, 390
BssMI	GATC	1 cut(s)	444
BssT1I	CCWWGG	1 cut(s)	365
Bst4CI	ACNGT	5 cut(s)	94, 136, 142, 428, 562
Bst6I	CTCTTC	3 cut(s)	19, 267, 392
BstAPI	GCANNNNNTGC	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	152, 584
BstDEI	CTNAG	1 cut(s)	507
BstF5I	GGATG	3 cut(s)	8, 242, 604
BstHHI	GCGC	1 cut(s)	582
BstKTI	GATC	1 cut(s)	447
BstMAI	GTCTC	3 cut(s)	394, 548, 652
BstMBI	GATC	1 cut(s)	444
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 151, 156, 190, 497
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	390
BstSLI	GKGCMC	2 cut(s)	156, 520
BstV1I	GCAGC	4 cut(s)	70, 177, 490, 512
BstV2I	GAAGAC	1 cut(s)	575
BstX2I	RGATCY	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	444
BsuRI	GGCC	3 cut(s)	370, 491, 518
BtgZI	GCGATG	1 cut(s)	160
BtsCI	GGATG	3 cut(s)	8, 242, 604
BtsI	GCAGTG	2 cut(s)	73, 154
BtsIMutI	CAGTG	5 cut(s)	73, 90, 154, 180, 502
Cac8I	GCNNGC	2 cut(s)	152, 584
CfoI	GCGC	1 cut(s)	582
Cfr13I	GGNCC	3 cut(s)	369, 516, 517
Csp6I	GTAC	2 cut(s)	335, 421
CviAII	CATG	2 cut(s)	181, 547
CviQI	GTAC	2 cut(s)	335, 421
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	1 cut(s)	446
DpnII	GATC	1 cut(s)	444
DriI	GACNNNNNGTC	1 cut(s)	407
Eam1104I	CTCTTC	3 cut(s)	19, 267, 392
Eam1105I	GACNNNNNGTC	1 cut(s)	407
EarI	CTCTTC	3 cut(s)	19, 267, 392
Eco130I	CCWWGG	1 cut(s)	365
Eco147I	AGGCCT	1 cut(s)	491
Eco24I	GRGCYC	1 cut(s)	520
Eco31I	GGTCTC	1 cut(s)	548
Eco57I	CTGAAG	2 cut(s)	478, 612
EcoO109I	RGGNCCY	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	365
EcoT38I	GRGCYC	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	2 cut(s)	184, 550
FaiI	YATR	6 cut(s)	69, 182, 261, 476, 483, 548
FaqI	GGGAC	2 cut(s)	16, 395
FatI	CATG	2 cut(s)	180, 546
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	4 cut(s)	59, 191, 501, 504
FokI	GGATG	2 cut(s)	229, 611
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	4 cut(s)	59, 191, 501, 504
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	1 cut(s)	581
GluI	GCNGC	4 cut(s)	59, 191, 501, 504
GsaI	CCCAGC	1 cut(s)	377
HaeIII	GGCC	3 cut(s)	370, 491, 518
HapII	CCGG	1 cut(s)	392
HhaI	GCGC	1 cut(s)	582
Hin1II	CATG	2 cut(s)	184, 550
Hin6I	GCGC	1 cut(s)	580
HinP1I	GCGC	1 cut(s)	580
HinfI	GANTC	2 cut(s)	408, 466
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	2 cut(s)	73, 178
Hpy188I	TCNGA	3 cut(s)	55, 303, 606
Hpy188III	TCNNGA	3 cut(s)	130, 269, 470
Hpy8I	GTNNAC	2 cut(s)	73, 178
HpyAV	CCTTC	4 cut(s)	60, 210, 502, 584
HpyCH4III	ACNGT	5 cut(s)	94, 136, 142, 428, 562
HpyCH4IV	ACGT	2 cut(s)	576, 639
HpyCH4V	TGCA	4 cut(s)	78, 117, 159, 500
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 151, 156, 190, 497
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	2 cut(s)	576, 639
Hsp92II	CATG	2 cut(s)	184, 550
HspAI	GCGC	1 cut(s)	580
Kzo9I	GATC	1 cut(s)	444
LmnI	GCTCC	1 cut(s)	350
Lsp1109I	GCAGC	4 cut(s)	70, 177, 490, 512
LweI	GCATC	2 cut(s)	137, 462
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	2 cut(s)	576, 639
MaeIII	GTNAC	2 cut(s)	136, 227
MalI	GATC	1 cut(s)	446
MboI	GATC	1 cut(s)	444
MboII	GAAGA	7 cut(s)	6, 229, 257, 284, 409, 577, 580
MflI	RGATCY	1 cut(s)	444
MhlI	GDGCHC	2 cut(s)	156, 520
MluCI	AATT	2 cut(s)	253, 511
MlyI	GAGTC	1 cut(s)	417
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	9 cut(s)	22, 44, 53, 57, 338, 341, 424, 481, 589
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	5 cut(s)	84, 151, 156, 190, 497
NciI	CCSGG	1 cut(s)	392
NdeII	GATC	1 cut(s)	444
NlaIII	CATG	2 cut(s)	184, 550
NlaIV	GGNNCC	2 cut(s)	371, 518
NmuCI	GTSAC	2 cut(s)	136, 227
NspI	RCATGY	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	466
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	4 cut(s)	60, 192, 502, 505
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
Psp1406I	AACGTT	1 cut(s)	639
PspFI	CCCAGC	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	371, 518
PspOMI	GGGCCC	1 cut(s)	516
PspPI	GGNCC	3 cut(s)	369, 516, 517
PsuI	RGATCY	1 cut(s)	444
PsyI	GACNNNGTC	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	2 cut(s)	336, 422
RsaNI	GTAC	2 cut(s)	335, 421
SatI	GCNGC	4 cut(s)	59, 191, 501, 504
Sau3AI	GATC	1 cut(s)	444
Sau96I	GGNCC	3 cut(s)	369, 516, 517
SchI	GAGTC	1 cut(s)	417
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	2 cut(s)	156, 520
SetI	ASST	9 cut(s)	29, 45, 63, 355, 379, 505, 579, 634, 642
SfaNI	GCATC	2 cut(s)	137, 462
Sse9I	AATT	2 cut(s)	253, 511
SseBI	AGGCCT	1 cut(s)	491
SsiI	CCGC	2 cut(s)	101, 150
SspMI	CTAG	1 cut(s)	315
StuI	AGGCCT	1 cut(s)	491
StyD4I	CCNGG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	5 cut(s)	94, 136, 142, 428, 562
TaiI	ACGT	2 cut(s)	579, 642
TaqI	TCGA	1 cut(s)	36
TasI	AATT	2 cut(s)	253, 511
TfiI	GAWTC	1 cut(s)	466
TscAI	CASTG	5 cut(s)	80, 97, 161, 180, 502
TseFI	GTSAC	2 cut(s)	136, 227
TseI	GCWGC	4 cut(s)	58, 190, 500, 503
Tsp45I	GTSAC	2 cut(s)	136, 227
TspDTI	ATGAA	5 cut(s)	206, 320, 372, 421, 623
TspRI	CASTG	5 cut(s)	80, 97, 161, 180, 502
Tth111I	GACNNNGTC	1 cut(s)	92
XceI	RCATGY	1 cut(s)	184
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.