Rh7DG203200

Axial regulator YABBY 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002502
Physical Location & Seq
Forward (+)
19249158 .. 19252325
3168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG203200.1

Sequence Viewer

Length: 507 bp
ATGTCATCCTCTAATTCTGCTGCTTCAACCTTGTCCCTTGACCACCTTGCTCCTTCCGAGCAGCTCTGCTATGTCCATTGCAACATTTGCGACACTGTCCTTGCGGTGAGTGTACCTTGCACAAGTTTGTTTAAGACTGTGACGGTCCGATGTGGCCACTGCACCAACCTGCTTCCGGTGAACATGCGCGGGTTGCTTCTGCCTTCCCCCAATCAGTTTCATCATCTTGGTCACTCCTTCTTCTCCCAGACTAATTCCCATAATAACCTTCTGGATCAGGAGATTCCAATGAATCCAACCCCAAACTTTCTGATGAACAATCAAACTAGCAGCCTGAATGACTTTGCTGTAAGACCAAGAGGAGGAGTAGTTGATGAGCTCCCAAGGCCCCCAGTTATAAACAGACGTGAGCTACTTCCTTCCTTAATTATACACATCCTTTTACTTTTGATCTTATTCTGTCTTAATTACATAGCCCTAGTGCTTAGTTTAGATGGTGATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YABBY

Protein Analysis

168

Amino Acids

18.53

Weight (kDa)

6.2

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YABBY_N PF24868 18 - 71 2.7e-28 YABBY, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 398
Acc36I ACCTGC 1 cut(s) 177
AccII CGCG 1 cut(s) 189
AciI CCGC 2 cut(s) 104, 189
AclWI GGATC 1 cut(s) 282
AcoI YGGCCR 1 cut(s) 154
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 175, 362
AgsI TTSAA 1 cut(s) 27
AjiI CACGTC 1 cut(s) 407
AluBI AGCT 3 cut(s) 64, 379, 412
AluI AGCT 3 cut(s) 64, 379, 412
Alw21I GWGCWC 1 cut(s) 381
AlwI GGATC 1 cut(s) 282
AoxI GGCC 2 cut(s) 154, 386
ApeKI GCWGC 3 cut(s) 20, 61, 330
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 2 cut(s) 145, 387
AsuHPI GGTGA 2 cut(s) 118, 190
AvaII GGWCC 1 cut(s) 145
BalI TGGCCA 1 cut(s) 156
BanII GRGCYC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 3 cut(s) 7, 73, 342
BccI CCATC 1 cut(s) 488
BfaI CTAG 2 cut(s) 327, 479
BfuAI ACCTGC 1 cut(s) 177
BisI GCNGC 3 cut(s) 21, 62, 331
BlsI GCNGC 3 cut(s) 22, 63, 332
Bme18I GGWCC 1 cut(s) 145
BmgBI CACGTC 1 cut(s) 407
BmgT120I GGNCC 2 cut(s) 145, 387
BmiI GGNNCC 1 cut(s) 389
BmrI ACTGGG 1 cut(s) 386
BmuI ACTGGG 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 383
BsaWI WCCGGW 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 362
Bse1I ACTGG 1 cut(s) 392
Bse3DI GCAATG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 2 cut(s) 5, 435
BseLI CCNNNNNNNGG 2 cut(s) 175, 362
BseMI GCAATG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 392
BseRI GAGGAG 2 cut(s) 375, 378
BseXI GCAGC 3 cut(s) 7, 73, 342
BsgI GTGCAG 1 cut(s) 145
Bsh1236I CGCG 1 cut(s) 189
BshFI GGCC 2 cut(s) 156, 388
BsiHKAI GWGCWC 1 cut(s) 381
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 2 cut(s) 175, 362
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 2 cut(s) 156, 388
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 2 cut(s) 274, 450
BspACI CCGC 2 cut(s) 104, 189
BspANI GGCC 2 cut(s) 156, 388
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 389
BspMI ACCTGC 1 cut(s) 177
BspPI GGATC 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 76
BsrI ACTGG 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 2 cut(s) 274, 450
BssT1I CCWWGG 1 cut(s) 383
Bst4CI ACNGT 3 cut(s) 97, 139, 145
BstAPI GCANNNNNTGC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 485
BstF5I GGATG 2 cut(s) 5, 435
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 2 cut(s) 277, 453
BstMBI GATC 2 cut(s) 274, 450
BstMWI GCNNNNNNNGC 3 cut(s) 87, 193, 385
BstNSI RCATGY 1 cut(s) 187
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 3 cut(s) 7, 73, 342
BsuRI GGCC 2 cut(s) 156, 388
BtrI CACGTC 1 cut(s) 407
BtsCI GGATG 2 cut(s) 5, 435
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 2 cut(s) 93, 157
BveI ACCTGC 1 cut(s) 177
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 2 cut(s) 145, 387
CpoI CGGWCCG 1 cut(s) 145
Csp6I GTAC 1 cut(s) 113
CspI CGGWCCG 1 cut(s) 145
CviAII CATG 1 cut(s) 184
CviJI RGCY 7 cut(s) 64, 156, 333, 379, 388, 412, 476
CviKI_1 RGCY 7 cut(s) 64, 156, 333, 379, 388, 412, 476
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 1 cut(s) 485
DpnI GATC 2 cut(s) 276, 452
DpnII GATC 2 cut(s) 274, 450
EaeI YGGCCR 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 379
Eco130I CCWWGG 1 cut(s) 383
Eco24I GRGCYC 1 cut(s) 381
Eco47I GGWCC 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 379
EcoICRI GAGCTC 1 cut(s) 379
EcoO109I RGGNCCY 1 cut(s) 387
EcoT14I CCWWGG 1 cut(s) 383
EcoT38I GRGCYC 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 383
FaeI CATG 1 cut(s) 187
FaiI YATR 8 cut(s) 72, 185, 261, 398, 431, 473, 503, 505
FaqI GGGAC 1 cut(s) 19
FatI CATG 1 cut(s) 183
FauI CCCGC 1 cut(s) 182
Fnu4HI GCNGC 3 cut(s) 21, 62, 331
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 3 cut(s) 21, 62, 331
FspBI CTAG 2 cut(s) 327, 479
GlaI GCGC 1 cut(s) 188
GluI GCNGC 3 cut(s) 21, 62, 331
HaeIII GGCC 2 cut(s) 156, 388
HapII CCGG 1 cut(s) 176
HhaI GCGC 1 cut(s) 189
Hin1II CATG 1 cut(s) 187
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HinfI GANTC 2 cut(s) 283, 292
HpaII CCGG 1 cut(s) 176
HphI GGTGA 2 cut(s) 118, 190
Hpy166II GTNNAC 2 cut(s) 113, 181
Hpy188I TCNGA 3 cut(s) 58, 149, 312
Hpy188III TCNNGA 2 cut(s) 272, 278
Hpy8I GTNNAC 2 cut(s) 113, 181
HpyAV CCTTC 5 cut(s) 63, 213, 247, 278, 429
HpyCH4III ACNGT 3 cut(s) 97, 139, 145
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 3 cut(s) 81, 120, 162
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 193, 385
HpyF3I CTNAG 1 cut(s) 485
HpySE526I ACGT 1 cut(s) 406
Hsp92II CATG 1 cut(s) 187
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 2 cut(s) 274, 450
LmnI GCTCC 2 cut(s) 55, 384
LpnPI CCDG 7 cut(s) 182, 189, 257, 260, 263, 347, 405
Lsp1109I GCAGC 3 cut(s) 7, 73, 342
MaeI CTAG 2 cut(s) 327, 479
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 2 cut(s) 139, 230
MalI GATC 2 cut(s) 276, 452
MboI GATC 2 cut(s) 274, 450
MboII GAAGA 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 381
MlsI TGGCCA 1 cut(s) 156
MluCI AATT 4 cut(s) 13, 253, 426, 466
MluNI TGGCCA 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 3 cut(s) 19, 353, 356
Mox20I TGGCCA 1 cut(s) 156
MscI TGGCCA 1 cut(s) 156
MseI TTAA 3 cut(s) 132, 425, 465
Msp20I TGGCCA 1 cut(s) 156
MspI CCGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 3 cut(s) 87, 193, 385
NdeII GATC 2 cut(s) 274, 450
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 1 cut(s) 389
NmuCI GTSAC 2 cut(s) 139, 230
NspI RCATGY 1 cut(s) 187
PfeI GAWTC 2 cut(s) 283, 292
PflFI GACNNNGTC 1 cut(s) 95
PkrI GCNGC 3 cut(s) 22, 63, 332
PsiI TTATAA 1 cut(s) 398
Psp124BI GAGCTC 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 389
PspPI GGNCC 2 cut(s) 145, 387
PsyI GACNNNGTC 1 cut(s) 95
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
Rsr2I CGGWCCG 1 cut(s) 145
RsrII CGGWCCG 1 cut(s) 145
SacI GAGCTC 1 cut(s) 381
SaqAI TTAA 3 cut(s) 132, 425, 465
SatI GCNGC 3 cut(s) 21, 62, 331
Sau3AI GATC 2 cut(s) 274, 450
Sau96I GGNCC 2 cut(s) 145, 387
SduI GDGCHC 1 cut(s) 381
SetI ASST 9 cut(s) 32, 48, 66, 118, 171, 270, 381, 409, 414
SinI GGWCC 1 cut(s) 145
Sse9I AATT 4 cut(s) 13, 253, 426, 466
SsiI CCGC 2 cut(s) 104, 189
SspMI CTAG 2 cut(s) 327, 479
SstI GAGCTC 1 cut(s) 381
StyI CCWWGG 1 cut(s) 383
TaaI ACNGT 3 cut(s) 97, 139, 145
TaiI ACGT 1 cut(s) 409
TasI AATT 4 cut(s) 13, 253, 426, 466
TfiI GAWTC 2 cut(s) 283, 292
Tru1I TTAA 3 cut(s) 132, 425, 465
Tru9I TTAA 3 cut(s) 132, 425, 465
TscAI CASTG 2 cut(s) 100, 164
TseFI GTSAC 2 cut(s) 139, 230
TseI GCWGC 3 cut(s) 20, 61, 330
Tsp45I GTSAC 2 cut(s) 139, 230
TspDTI ATGAA 3 cut(s) 209, 305, 329
TspRI CASTG 2 cut(s) 100, 164
Tth111I GACNNNGTC 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 145
XceI RCATGY 1 cut(s) 187
XspI CTAG 2 cut(s) 327, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.