Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004208.1

Orthogroup ID

OG0002502

Physical Location & Seq

Genomic Coordinates Forward (+)

9827 .. 13071

Gene Structure 3245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004208.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgtctgctgctgcctcttccaacactgtcttttcatcaccggaccacctctccccctccgatcagctctgctatgttcactgcaacttttgtgatactgttctcgcggtaagcgttccttgcagcagtttgttcaagacagtgacggtccgatgcggccattgcagcaacctgctctccgtcaacatgcgcggacttcttctccctgctgcagctaaccaacgtcacctcggacattctttcttcactcctcagaatctcctggaggagatccgaaacgccccatcaaacacgttctcaaatcagcctaacatgatgatgaacgaatcatttatgccgatgattcgaggagttgaggagatacctaagcctccacctgttgttaacagacctccggagaagagacagagagtgccatctgcctacaaccgcttcatcaaggaagagatacaacgtatcaaagctggaaaccctgatattagccacagagaggccttcagtgctgctgccaagaattgggcccacttccctcacatccactttggcctgatgcctgatcaacccgtgaagaaagccaatattcgccaggatggagaggacatgctcatcaaagacaatggatttttcagcgctcctgcaaatttggcttttcatgtccccaagccaagcagcaagccttcgtactttcgtaggcctaggggtcggacagctaacaacccggacttagcgccagctcctgctattgcaatggactattggctattgtcaagattgaagagctcatacctatataggcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009909 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010093 GO:0010154 GO:0010158 GO:0010229 GO:0010450 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0090706 GO:0099402 GO:0140110 GO:1902183 GO:1903506 GO:1905392 GO:1905393 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

266

Amino Acids

29.84

Weight (kDa)

9.6

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45190 AT2G45190
fragaria_vesca	FvH4_5g00320 FvH4_5g00320 FvH4_7g11260 FvH4_7g11260 FvH4_7g11260
malus_domestica	MD04G1083800.v1.1 MD06G1065700.v1.1 MD07G1117200.v1.1
prunus_persica	Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.5G075800_v2.0.a1
pyrus_communis	pycom02g17050 pycom04g07490 pycom07g10750
rosa_chinensis	RchiOBHm_Chr1g0349391 RchiOBHm_Chr7g0202251
rosa_laevigata	RLG00000003614 RLG00000028552
rosa_multiflora	Rmu_sc0001394.1_g000004 Rmu_sc0004208.1_g000005 Rmu_sc0018468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00254710 Rroxscaffold_4G00305570
rosa_rugosa	Rorug01G0203200 Rorug01G0203300 Rorug07G0069300 Rorug07G0069400
rosa_samantha	Rh1AG220600 Rh1BG186800 Rh1CG205700 Rh1DG216200 Rh7AG196600 Rh7BG197800 Rh7CG207700 Rh7DG203200
rosa_wichuraiana	Rw1G018760 Rw7G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	180
AccB7I	CCANNNNNTGG	1 cut(s)	516
AccII	CGCG	2 cut(s)	107, 192
AccIII	TCCGGA	1 cut(s)	394
AciI	CCGC	4 cut(s)	107, 156, 192, 430
AclWI	GGATC	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	640
AcuI	CTGAAG	1 cut(s)	481
AfaI	GTAC	1 cut(s)	683
AfeI	AGCGCT	1 cut(s)	631
AfiI	CCNNNNNNNGG	2 cut(s)	490, 516
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	2 cut(s)	136, 775
AjnI	CCWGG	2 cut(s)	261, 585
AluBI	AGCT	6 cut(s)	67, 215, 464, 710, 734, 780
AluI	AGCT	6 cut(s)	67, 215, 464, 710, 734, 780
Alw21I	GWGCWC	1 cut(s)	782
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	1 cut(s)	265
AlwNI	CAGNNNCTG	1 cut(s)	737
Aor13HI	TCCGGA	1 cut(s)	394
Aor51HI	AGCGCT	1 cut(s)	631
AoxI	GGCC	5 cut(s)	157, 492, 519, 544, 692
ApaI	GGGCCC	1 cut(s)	523
ApeKI	GCWGC	9 cut(s)	8, 11, 123, 165, 209, 212, 503, 506, 669
ApoI	RAATTY	1 cut(s)	640
AspA2I	CCTAGG	1 cut(s)	695
AspLEI	GCGC	3 cut(s)	192, 632, 730
AspS9I	GGNCC	4 cut(s)	43, 148, 519, 520
AsuC2I	CCSGG	1 cut(s)	719
AsuHPI	GGTGA	2 cut(s)	30, 218
AvaII	GGWCC	2 cut(s)	43, 148
AvrII	CCTAGG	1 cut(s)	695
BaeGI	GKGCMC	1 cut(s)	523
BanII	GRGCYC	2 cut(s)	523, 782
BarI	GAAGNNNNNNTAC	2 cut(s)	767, 799
Bbv12I	GWGCWC	1 cut(s)	782
BbvI	GCAGC	7 cut(s)	135, 177, 196, 224, 490, 493, 681
BccI	CCATC	3 cut(s)	292, 424, 584
BciT130I	CCWGG	2 cut(s)	263, 587
BclI	TGATCA	1 cut(s)	556
BcnI	CCSGG	1 cut(s)	719
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	1 cut(s)	696
BfmI	CTRYAG	1 cut(s)	210
BfoI	RGCGCY	2 cut(s)	633, 731
BfuAI	ACCTGC	1 cut(s)	180
BlnI	CCTAGG	1 cut(s)	695
Bme1390I	CCNGG	3 cut(s)	263, 587, 719
Bme18I	GGWCC	2 cut(s)	43, 148
BmgT120I	GGNCC	4 cut(s)	43, 148, 519, 520
BmiI	GGNNCC	1 cut(s)	521
BmrFI	CCNGG	3 cut(s)	263, 587, 719
BmsI	GCATC	2 cut(s)	143, 540
BpmI	CTGGAG	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	719
BsaJI	CCNNGG	2 cut(s)	229, 695
BsaWI	WCCGGW	2 cut(s)	40, 394
BsaXI	ACNNNNNCTCC	6 cut(s)	35, 65, 161, 186, 191, 216
Bsc4I	CCNNNNNNNGG	2 cut(s)	490, 516
Bse3DI	GCAATG	2 cut(s)	160, 753
BseAI	TCCGGA	1 cut(s)	394
BseBI	CCWGG	2 cut(s)	263, 587
BseDI	CCNNGG	2 cut(s)	229, 695
BseGI	GGATG	2 cut(s)	534, 595
BseLI	CCNNNNNNNGG	2 cut(s)	490, 516
BseMI	GCAATG	2 cut(s)	160, 753
BseMII	CTCAG	1 cut(s)	266
BseRI	GAGGAG	4 cut(s)	240, 281, 363, 371
BseSI	GKGCMC	1 cut(s)	523
BseXI	GCAGC	7 cut(s)	135, 177, 196, 224, 490, 493, 681
Bsh1236I	CGCG	2 cut(s)	107, 192
BshFI	GGCC	5 cut(s)	159, 494, 521, 546, 694
BsiHKAI	GWGCWC	1 cut(s)	782
BsiSI	CCGG	3 cut(s)	41, 395, 719
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	2 cut(s)	490, 516
BsmAI	GTCTC	1 cut(s)	397
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	5 cut(s)	159, 494, 521, 546, 694
Bsp120I	GGGCCC	1 cut(s)	519
Bsp1286I	GDGCHC	2 cut(s)	523, 782
Bsp13I	TCCGGA	1 cut(s)	394
Bsp143I	GATC	3 cut(s)	61, 270, 556
BspACI	CCGC	4 cut(s)	107, 156, 192, 430
BspANI	GGCC	5 cut(s)	159, 494, 521, 546, 694
BspCNI	CTCAG	1 cut(s)	265
BspEI	TCCGGA	1 cut(s)	394
BspFNI	CGCG	2 cut(s)	107, 192
BspLI	GGNNCC	1 cut(s)	521
BspMAI	CTGCAG	1 cut(s)	214
BspMI	ACCTGC	1 cut(s)	180
BspPI	GGATC	1 cut(s)	265
BspQI	GCTCTTC	1 cut(s)	770
BsrDI	GCAATG	2 cut(s)	160, 753
BssECI	CCNNGG	2 cut(s)	229, 695
BssMI	GATC	3 cut(s)	61, 270, 556
BssT1I	CCWWGG	1 cut(s)	695
Bst2UI	CCWGG	2 cut(s)	263, 587
Bst4CI	ACNGT	4 cut(s)	28, 100, 142, 148
Bst6I	CTCTTC	4 cut(s)	22, 395, 438, 770
BstC8I	GCNNGC	2 cut(s)	674, 732
BstDEI	CTNAG	3 cut(s)	252, 366, 724
BstF5I	GGATG	2 cut(s)	534, 595
BstFNI	CGCG	2 cut(s)	107, 192
BstH2I	RGCGCY	2 cut(s)	633, 731
BstHHI	GCGC	3 cut(s)	192, 632, 730
BstKTI	GATC	3 cut(s)	64, 273, 559
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	3 cut(s)	61, 270, 556
BstMWI	GCNNNNNNNGC	5 cut(s)	120, 162, 165, 500, 644
BstNI	CCWGG	2 cut(s)	263, 587
BstNSI	RCATGY	2 cut(s)	190, 604
BstSCI	CCNGG	3 cut(s)	261, 585, 717
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	523
BstUI	CGCG	2 cut(s)	107, 192
BstV1I	GCAGC	7 cut(s)	135, 177, 196, 224, 490, 493, 681
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	5 cut(s)	159, 494, 521, 546, 694
BtsCI	GGATG	2 cut(s)	534, 595
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	4 cut(s)	24, 79, 147, 505
BveI	ACCTGC	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	674, 732
CaiI	CAGNNNCTG	1 cut(s)	737
CfoI	GCGC	3 cut(s)	192, 632, 730
Cfr13I	GGNCC	4 cut(s)	43, 148, 519, 520
CpoI	CGGWCCG	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	682
CspI	CGGWCCG	1 cut(s)	148
CviAII	CATG	4 cut(s)	187, 313, 601, 653
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	3 cut(s)	252, 366, 724
DpnI	GATC	3 cut(s)	63, 272, 558
DpnII	GATC	3 cut(s)	61, 270, 556
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	4 cut(s)	22, 395, 438, 770
EarI	CTCTTC	4 cut(s)	22, 395, 438, 770
Ecl136II	GAGCTC	1 cut(s)	780
Eco130I	CCWWGG	1 cut(s)	695
Eco147I	AGGCCT	2 cut(s)	494, 694
Eco24I	GRGCYC	2 cut(s)	523, 782
Eco47I	GGWCC	2 cut(s)	43, 148
Eco47III	AGCGCT	1 cut(s)	631
Eco53kI	GAGCTC	1 cut(s)	780
Eco57I	CTGAAG	1 cut(s)	481
EcoICRI	GAGCTC	1 cut(s)	780
EcoRII	CCWGG	2 cut(s)	261, 585
EcoT14I	CCWWGG	1 cut(s)	695
EcoT38I	GRGCYC	2 cut(s)	523, 782
ErhI	CCWWGG	1 cut(s)	695
FaeI	CATG	4 cut(s)	190, 316, 604, 656
FaiI	YATR	9 cut(s)	75, 188, 314, 335, 602, 654, 784, 790, 792
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	4 cut(s)	186, 312, 600, 652
FbaI	TGATCA	1 cut(s)	556
FokI	GGATG	2 cut(s)	521, 602
FriOI	GRGCYC	2 cut(s)	523, 782
FspBI	CTAG	1 cut(s)	696
GlaI	GCGC	3 cut(s)	191, 631, 729
GsuI	CTGGAG	1 cut(s)	284
HaeII	RGCGCY	2 cut(s)	633, 731
HaeIII	GGCC	5 cut(s)	159, 494, 521, 546, 694
HapII	CCGG	3 cut(s)	41, 395, 719
HhaI	GCGC	3 cut(s)	192, 632, 730
Hin1II	CATG	4 cut(s)	190, 316, 604, 656
Hin6I	GCGC	3 cut(s)	190, 630, 728
HinP1I	GCGC	3 cut(s)	190, 630, 728
HincII	GTYRAC	2 cut(s)	184, 385
HindII	GTYRAC	2 cut(s)	184, 385
HinfI	GANTC	3 cut(s)	256, 326, 343
HpaI	GTTAAC	1 cut(s)	385
HpaII	CCGG	3 cut(s)	41, 395, 719
HphI	GGTGA	2 cut(s)	30, 218
Hpy166II	GTNNAC	3 cut(s)	79, 184, 385
Hpy188I	TCNGA	6 cut(s)	61, 152, 233, 255, 275, 705
Hpy188III	TCNNGA	3 cut(s)	136, 395, 768
Hpy8I	GTNNAC	3 cut(s)	79, 184, 385
HpyAV	CCTTC	2 cut(s)	505, 687
HpyCH4III	ACNGT	4 cut(s)	28, 100, 142, 148
HpyCH4IV	ACGT	3 cut(s)	223, 293, 454
HpyCH4V	TGCA	6 cut(s)	84, 123, 165, 212, 638, 746
HpyF10VI	GCNNNNNNNGC	5 cut(s)	120, 162, 165, 500, 644
HpyF3I	CTNAG	3 cut(s)	252, 366, 724
HpySE526I	ACGT	3 cut(s)	223, 293, 454
Hsp92II	CATG	4 cut(s)	190, 316, 604, 656
HspAI	GCGC	3 cut(s)	190, 630, 728
Kpn2I	TCCGGA	1 cut(s)	394
Ksp22I	TGATCA	1 cut(s)	556
KspAI	GTTAAC	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	61, 270, 556
LguI	GCTCTTC	1 cut(s)	770
LmnI	GCTCC	2 cut(s)	637, 739
Lsp1109I	GCAGC	7 cut(s)	135, 177, 196, 224, 490, 493, 681
LweI	GCATC	2 cut(s)	143, 540
MaeI	CTAG	1 cut(s)	696
MaeII	ACGT	3 cut(s)	223, 293, 454
MaeIII	GTNAC	2 cut(s)	142, 224
MalI	GATC	3 cut(s)	63, 272, 558
MboI	GATC	3 cut(s)	61, 270, 556
MboII	GAAGA	7 cut(s)	9, 191, 235, 412, 455, 580, 787
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	2 cut(s)	523, 782
MluCI	AATT	2 cut(s)	514, 640
MmeI	TCCRAC	2 cut(s)	45, 683
MroI	TCCGGA	1 cut(s)	394
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	1 cut(s)	317
MspI	CCGG	3 cut(s)	41, 395, 719
MspR9I	CCNGG	3 cut(s)	263, 587, 719
MvaI	CCWGG	2 cut(s)	263, 587
MvnI	CGCG	2 cut(s)	107, 192
MwoI	GCNNNNNNNGC	5 cut(s)	120, 162, 165, 500, 644
NciI	CCSGG	1 cut(s)	719
NdeII	GATC	3 cut(s)	61, 270, 556
NlaIII	CATG	4 cut(s)	190, 316, 604, 656
NlaIV	GGNNCC	1 cut(s)	521
NmuCI	GTSAC	2 cut(s)	142, 224
NspI	RCATGY	2 cut(s)	190, 604
PceI	AGGCCT	2 cut(s)	494, 694
PciSI	GCTCTTC	1 cut(s)	770
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PfeI	GAWTC	3 cut(s)	256, 326, 343
PflMI	CCANNNNNTGG	1 cut(s)	516
PfoI	TCCNGGA	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	782
Psp6I	CCWGG	2 cut(s)	261, 585
PspGI	CCWGG	2 cut(s)	261, 585
PspN4I	GGNNCC	1 cut(s)	521
PspOMI	GGGCCC	1 cut(s)	519
PspPI	GGNCC	4 cut(s)	43, 148, 519, 520
PstI	CTGCAG	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	1 cut(s)	270
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
RseI	CAYNNNNRTG	1 cut(s)	317
Rsr2I	CGGWCCG	1 cut(s)	148
RsrII	CGGWCCG	1 cut(s)	148
SacI	GAGCTC	1 cut(s)	782
SapI	GCTCTTC	1 cut(s)	770
SaqAI	TTAA	1 cut(s)	384
Sau3AI	GATC	3 cut(s)	61, 270, 556
Sau96I	GGNCC	4 cut(s)	43, 148, 519, 520
ScrFI	CCNGG	3 cut(s)	263, 587, 719
SduI	GDGCHC	2 cut(s)	523, 782
SfaNI	GCATC	2 cut(s)	143, 540
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	2 cut(s)	43, 148
SmiMI	CAYNNNNRTG	1 cut(s)	317
Sse9I	AATT	2 cut(s)	514, 640
SseBI	AGGCCT	2 cut(s)	494, 694
SsiI	CCGC	4 cut(s)	107, 156, 192, 430
SspI	AATATT	1 cut(s)	580
SspMI	CTAG	1 cut(s)	696
SstI	GAGCTC	1 cut(s)	782
StuI	AGGCCT	2 cut(s)	494, 694
StyD4I	CCNGG	3 cut(s)	261, 585, 717
StyI	CCWWGG	1 cut(s)	695
TaaI	ACNGT	4 cut(s)	28, 100, 142, 148
TaiI	ACGT	3 cut(s)	226, 296, 457
TaqI	TCGA	1 cut(s)	346
TasI	AATT	2 cut(s)	514, 640
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	3 cut(s)	256, 326, 343
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	4 cut(s)	31, 86, 147, 505
TseFI	GTSAC	2 cut(s)	142, 224
TseI	GCWGC	9 cut(s)	8, 11, 123, 165, 209, 212, 503, 506, 669
Tsp45I	GTSAC	2 cut(s)	142, 224
TspDTI	ATGAA	4 cut(s)	24, 335, 424, 641
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	4 cut(s)	31, 86, 147, 505
Van91I	CCANNNNNTGG	1 cut(s)	516
VpaK11BI	GGWCC	2 cut(s)	43, 148
XapI	RAATTY	1 cut(s)	640
XceI	RCATGY	2 cut(s)	190, 604
XmaJI	CCTAGG	1 cut(s)	695
XspI	CTAG	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.