Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002502

Physical Location & Seq

Genomic Coordinates Forward (+)

17712762 .. 17715188

Gene Structure 2427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG196600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTCATCCTCTAATTCTGCTGCTTCAACCTTGTCCCTTGACCACCTTGCTCCTTCCGAGCAGCTCTGCTATGTCCATTGCAACATTTGCGACACTGTCCTTGCGGTGAGTGTACCTTGCACAAGTTTGTTTAAGACTGTGACGGTCCGATGTGGCCACTGCACCAACCTGCTTCCGGTGAACATGCGCGGGTTGCTTCTGCCTTCCCCCAATCAGTTTCATCATCTTGGTCACTCCTTCTTCTCCCAGACTAATTCCCATAATAACCTTCTGGATCAGGAGATTCCAATGAATCCAACCCCAAACTTTCTGATGAACAATCAAACTAGCAGCCTGAATGACTTTGCTGTAAGACCAAGAGGAGGAGTAGTTGATGAGCTCCCAAGGCCCCCAGTTATAAACAGACCTCCGGAGAAGAGACAGAGAGTCCCCTCAGCCTACAACCGCTTCATCAAAGACGAGATCCAACGCATCAAGTCTGTGAATCCTGATATATCCCATAGAGAAGCCTTCAGCGCAGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCTGACCAGAACACTGTGAAGAAGACAAATGTGCGCCAACAGGAAGCTGGAGAGGACGTTCTGATGAAAGATCACAATGGATTTTTCGCTGCTGCTAATAATAATGTGCGGGTCTCTCCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

230

Amino Acids

25.72

Weight (kDa)

8.58

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	18 - 71	4.9e-28	YABBY, N-terminal
YABBY	PF04690	128 - 187	1.1e-36	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45190 AT2G45190
fragaria_vesca	FvH4_5g00320 FvH4_5g00320 FvH4_7g11260 FvH4_7g11260 FvH4_7g11260
malus_domestica	MD04G1083800.v1.1 MD06G1065700.v1.1 MD07G1117200.v1.1
prunus_persica	Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.5G075800_v2.0.a1
pyrus_communis	pycom02g17050 pycom04g07490 pycom07g10750
rosa_chinensis	RchiOBHm_Chr1g0349391 RchiOBHm_Chr7g0202251
rosa_laevigata	RLG00000003614 RLG00000028552
rosa_multiflora	Rmu_sc0001394.1_g000004 Rmu_sc0004208.1_g000005 Rmu_sc0018468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00254710 Rroxscaffold_4G00305570
rosa_rugosa	Rorug01G0203200 Rorug01G0203300 Rorug07G0069300 Rorug07G0069400
rosa_samantha	Rh1AG220600 Rh1BG186800 Rh1CG205700 Rh1DG216200 Rh7AG196600 Rh7BG197800 Rh7CG207700 Rh7DG203200
rosa_wichuraiana	Rw1G018760 Rw7G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	398
Acc36I	ACCTGC	1 cut(s)	177
AccII	CGCG	1 cut(s)	189
AccIII	TCCGGA	1 cut(s)	409
AciI	CCGC	4 cut(s)	104, 189, 445, 676
AclWI	GGATC	2 cut(s)	282, 457
AcoI	YGGCCR	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	496
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	2 cut(s)	175, 362
AgsI	TTSAA	1 cut(s)	27
AhdI	GACNNNNNGTC	1 cut(s)	425
AloI	GAACNNNNNNTCC	2 cut(s)	609, 641
AluBI	AGCT	4 cut(s)	64, 379, 521, 614
AluI	AGCT	4 cut(s)	64, 379, 521, 614
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	3 cut(s)	412, 566, 685
AlwI	GGATC	2 cut(s)	282, 457
Aor13HI	TCCGGA	1 cut(s)	409
AoxI	GGCC	3 cut(s)	154, 386, 534
ApaI	GGGCCC	1 cut(s)	538
ApeKI	GCWGC	7 cut(s)	20, 61, 330, 518, 521, 656, 659
AspLEI	GCGC	3 cut(s)	189, 518, 603
AspS9I	GGNCC	4 cut(s)	145, 387, 534, 535
AsuHPI	GGTGA	2 cut(s)	118, 190
AvaII	GGWCC	1 cut(s)	145
BaeGI	GKGCMC	1 cut(s)	538
BalI	TGGCCA	1 cut(s)	156
BanII	GRGCYC	2 cut(s)	381, 538
BbsI	GAAGAC	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	381
BbvCI	CCTCAGC	1 cut(s)	433
BbvI	GCAGC	7 cut(s)	7, 73, 342, 508, 530, 643, 646
BcoDI	GTCTC	3 cut(s)	412, 566, 685
BfaI	CTAG	1 cut(s)	327
BfuAI	ACCTGC	1 cut(s)	177
BisI	GCNGC	7 cut(s)	21, 62, 331, 519, 522, 657, 660
BlsI	GCNGC	7 cut(s)	22, 63, 332, 520, 523, 658, 661
Bme18I	GGWCC	1 cut(s)	145
BmeRI	GACNNNNNGTC	1 cut(s)	425
BmgT120I	GGNCC	4 cut(s)	145, 387, 534, 535
BmiI	GGNNCC	2 cut(s)	389, 536
BmrI	ACTGGG	1 cut(s)	386
BmsI	GCATC	1 cut(s)	480
BmuI	ACTGGG	1 cut(s)	386
BpiI	GAAGAC	1 cut(s)	596
BpmI	CTGGAG	1 cut(s)	636
Bpu10I	CCTNAGC	1 cut(s)	433
BsaI	GGTCTC	2 cut(s)	566, 685
BsaJI	CCNNGG	1 cut(s)	383
BsaWI	WCCGGW	2 cut(s)	175, 409
BsaXI	ACNNNNNCTCC	4 cut(s)	354, 384, 609, 639
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 362
Bse1I	ACTGG	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	76
BseAI	TCCGGA	1 cut(s)	409
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	2 cut(s)	175, 362
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	1 cut(s)	392
BseRI	GAGGAG	2 cut(s)	375, 378
BseSI	GKGCMC	1 cut(s)	538
BseXI	GCAGC	7 cut(s)	7, 73, 342, 508, 530, 643, 646
BsgI	GTGCAG	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	3 cut(s)	156, 388, 536
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	2 cut(s)	176, 410
BslFI	GGGAC	2 cut(s)	19, 413
BslI	CCNNNNNNNGG	2 cut(s)	175, 362
BsmAI	GTCTC	3 cut(s)	412, 566, 685
BsmFI	GGGAC	2 cut(s)	19, 413
BsnI	GGCC	3 cut(s)	156, 388, 536
Bso31I	GGTCTC	2 cut(s)	566, 685
Bsp120I	GGGCCC	1 cut(s)	534
Bsp1286I	GDGCHC	2 cut(s)	381, 538
Bsp13I	TCCGGA	1 cut(s)	409
Bsp143I	GATC	3 cut(s)	274, 462, 637
BspACI	CCGC	4 cut(s)	104, 189, 445, 676
BspANI	GGCC	3 cut(s)	156, 388, 536
BspCNI	CTCAG	1 cut(s)	446
BspEI	TCCGGA	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	389, 536
BspMI	ACCTGC	1 cut(s)	177
BspPI	GGATC	2 cut(s)	282, 457
BspTNI	GGTCTC	2 cut(s)	566, 685
BsrDI	GCAATG	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	3 cut(s)	274, 462, 637
BssT1I	CCWWGG	1 cut(s)	383
Bst4CI	ACNGT	4 cut(s)	97, 139, 145, 583
Bst6I	CTCTTC	1 cut(s)	410
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	433, 525
BstF5I	GGATG	1 cut(s)	5
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	3 cut(s)	189, 518, 603
BstKTI	GATC	3 cut(s)	277, 465, 640
BstMAI	GTCTC	3 cut(s)	412, 566, 685
BstMBI	GATC	3 cut(s)	274, 462, 637
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 193, 385, 515
BstNSI	RCATGY	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	538
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	7 cut(s)	7, 73, 342, 508, 530, 643, 646
BstV2I	GAAGAC	1 cut(s)	596
BstX2I	RGATCY	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	462
BsuRI	GGCC	3 cut(s)	156, 388, 536
BtsCI	GGATG	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	3 cut(s)	93, 157, 579
BveI	ACCTGC	1 cut(s)	177
CfoI	GCGC	3 cut(s)	189, 518, 603
Cfr13I	GGNCC	4 cut(s)	145, 387, 534, 535
CpoI	CGGWCCG	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	113
CspI	CGGWCCG	1 cut(s)	145
CviAII	CATG	2 cut(s)	184, 565
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	2 cut(s)	433, 525
DpnI	GATC	3 cut(s)	276, 464, 639
DpnII	GATC	3 cut(s)	274, 462, 637
DriI	GACNNNNNGTC	1 cut(s)	425
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	410
Eam1105I	GACNNNNNGTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	410
Ecl136II	GAGCTC	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	383
Eco24I	GRGCYC	2 cut(s)	381, 538
Eco31I	GGTCTC	2 cut(s)	566, 685
Eco47I	GGWCC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	496
EcoICRI	GAGCTC	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	383
EcoT38I	GRGCYC	2 cut(s)	381, 538
ErhI	CCWWGG	1 cut(s)	383
FaeI	CATG	2 cut(s)	187, 568
FaiI	YATR	7 cut(s)	72, 185, 261, 398, 494, 501, 566
FaqI	GGGAC	2 cut(s)	19, 413
FatI	CATG	2 cut(s)	183, 564
FauI	CCCGC	2 cut(s)	182, 669
Fnu4HI	GCNGC	7 cut(s)	21, 62, 331, 519, 522, 657, 660
FriOI	GRGCYC	2 cut(s)	381, 538
Fsp4HI	GCNGC	7 cut(s)	21, 62, 331, 519, 522, 657, 660
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	3 cut(s)	188, 517, 602
GluI	GCNGC	7 cut(s)	21, 62, 331, 519, 522, 657, 660
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	3 cut(s)	156, 388, 536
HapII	CCGG	2 cut(s)	176, 410
HhaI	GCGC	3 cut(s)	189, 518, 603
Hin1II	CATG	2 cut(s)	187, 568
Hin6I	GCGC	3 cut(s)	187, 516, 601
HinP1I	GCGC	3 cut(s)	187, 516, 601
HinfI	GANTC	4 cut(s)	283, 292, 426, 484
HpaII	CCGG	2 cut(s)	176, 410
HphI	GGTGA	2 cut(s)	118, 190
Hpy166II	GTNNAC	2 cut(s)	113, 181
Hpy188I	TCNGA	4 cut(s)	58, 149, 312, 630
Hpy188III	TCNNGA	4 cut(s)	272, 278, 410, 488
Hpy8I	GTNNAC	2 cut(s)	113, 181
HpyAV	CCTTC	5 cut(s)	63, 213, 247, 278, 520
HpyCH4III	ACNGT	4 cut(s)	97, 139, 145, 583
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	3 cut(s)	81, 120, 162
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 193, 385, 515
HpyF3I	CTNAG	2 cut(s)	433, 525
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	2 cut(s)	187, 568
HspAI	GCGC	3 cut(s)	187, 516, 601
Kpn2I	TCCGGA	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	274, 462, 637
LmnI	GCTCC	2 cut(s)	55, 384
Lsp1109I	GCAGC	7 cut(s)	7, 73, 342, 508, 530, 643, 646
LweI	GCATC	1 cut(s)	480
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	2 cut(s)	139, 230
MalI	GATC	3 cut(s)	276, 464, 639
MboI	GATC	3 cut(s)	274, 462, 637
MboII	GAAGA	4 cut(s)	232, 427, 598, 601
MflI	RGATCY	1 cut(s)	462
MhlI	GDGCHC	2 cut(s)	381, 538
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	3 cut(s)	13, 253, 529
MluNI	TGGCCA	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	435
MmeI	TCCRAC	2 cut(s)	320, 490
MnlI	CCTC	6 cut(s)	19, 353, 356, 417, 442, 613
Mox20I	TGGCCA	1 cut(s)	156
MroI	TCCGGA	1 cut(s)	409
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	1 cut(s)	132
Msp20I	TGGCCA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	2 cut(s)	176, 410
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	87, 193, 385, 515
NdeII	GATC	3 cut(s)	274, 462, 637
NlaIII	CATG	2 cut(s)	187, 568
NlaIV	GGNNCC	2 cut(s)	389, 536
NmuCI	GTSAC	2 cut(s)	139, 230
NspI	RCATGY	1 cut(s)	187
PfeI	GAWTC	3 cut(s)	283, 292, 484
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	7 cut(s)	22, 63, 332, 520, 523, 658, 661
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
PsiI	TTATAA	1 cut(s)	398
Psp124BI	GAGCTC	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	389, 536
PspOMI	GGGCCC	1 cut(s)	534
PspPI	GGNCC	4 cut(s)	145, 387, 534, 535
PsuI	RGATCY	1 cut(s)	462
PsyI	GACNNNGTC	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
Rsr2I	CGGWCCG	1 cut(s)	145
RsrII	CGGWCCG	1 cut(s)	145
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	7 cut(s)	21, 62, 331, 519, 522, 657, 660
Sau3AI	GATC	3 cut(s)	274, 462, 637
Sau96I	GGNCC	4 cut(s)	145, 387, 534, 535
SchI	GAGTC	1 cut(s)	435
SduI	GDGCHC	2 cut(s)	381, 538
SfaNI	GCATC	1 cut(s)	480
SinI	GGWCC	1 cut(s)	145
Sse9I	AATT	3 cut(s)	13, 253, 529
SsiI	CCGC	4 cut(s)	104, 189, 445, 676
SspMI	CTAG	1 cut(s)	327
SstI	GAGCTC	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	4 cut(s)	97, 139, 145, 583
TaiI	ACGT	1 cut(s)	627
TasI	AATT	3 cut(s)	13, 253, 529
TfiI	GAWTC	3 cut(s)	283, 292, 484
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	3 cut(s)	100, 164, 586
TseFI	GTSAC	2 cut(s)	139, 230
TseI	GCWGC	7 cut(s)	20, 61, 330, 518, 521, 656, 659
Tsp45I	GTSAC	2 cut(s)	139, 230
TspDTI	ATGAA	5 cut(s)	209, 305, 329, 439, 647
TspRI	CASTG	3 cut(s)	100, 164, 586
Tth111I	GACNNNGTC	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	145
XceI	RCATGY	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	1 cut(s)	611
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.