Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002502

Physical Location & Seq

Genomic Coordinates Reverse (-)

50753648 .. 50756019

Gene Structure 2372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003614

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTCATCCTCTAATTCTGCTGCTTCAACCTTGTCCCTTGACCACCTTGCTCCTTCCGAGCAGCTCTGCTATGTCCATTGCAACATTTGCGACACTGTCCTTGCGGTGAGTGTACCTTGCACAAGTTTGTTTAAGACTGTGACGGTCCGATGTGGCCACTGCACCAACCTGCTTCCGGTGAACATGCGCGGGTTGCTTCTGCCTTCCCCCAATCAGTTTCATCATCTTGGTCACTCCTTCTTCTCCCAGGCTAATTCCCATAATAACCTTCTGGATCAGGAGATTCCAATGAATCCAACCCCAAACTTTCTGATGAACAATCAAACTAGCAGCCTGAATGACTTTGCTGTAAGACCAAGAGGAGTAGTTGATGAGCTCCCAAGGCCCCCAGTTATAAACAGACCTCCGGAGAAGAGACAGAGAGTCCCCTCAGCCTACAACCGCTTCATCAAAGACGAGATCCAACGCATCAAGTCTGTGAATCCTGATATATCCCATAGAGAAGCCTTCAGCGCAGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCTGACCAGAACACTGTGAAGAAGACAAATGTGCGCCAACAGGAAGCTGGAGAGGACGTTCTGATGAAAGATCACAATGGATTTTTCGCTGCTACTAATAATAATGTGCGGGTCTCTCCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

230

Amino Acids

25.66

Weight (kDa)

8.58

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	18 - 71	4.8e-28	YABBY, N-terminal
YABBY	PF04690	127 - 186	1e-36	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45190 AT2G45190
fragaria_vesca	FvH4_5g00320 FvH4_5g00320 FvH4_7g11260 FvH4_7g11260 FvH4_7g11260
malus_domestica	MD04G1083800.v1.1 MD06G1065700.v1.1 MD07G1117200.v1.1
prunus_persica	Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.5G075800_v2.0.a1
pyrus_communis	pycom02g17050 pycom04g07490 pycom07g10750
rosa_chinensis	RchiOBHm_Chr1g0349391 RchiOBHm_Chr7g0202251
rosa_laevigata	RLG00000003614 RLG00000028552
rosa_multiflora	Rmu_sc0001394.1_g000004 Rmu_sc0004208.1_g000005 Rmu_sc0018468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00254710 Rroxscaffold_4G00305570
rosa_rugosa	Rorug01G0203200 Rorug01G0203300 Rorug07G0069300 Rorug07G0069400
rosa_samantha	Rh1AG220600 Rh1BG186800 Rh1CG205700 Rh1DG216200 Rh7AG196600 Rh7BG197800 Rh7CG207700 Rh7DG203200
rosa_wichuraiana	Rw1G018760 Rw7G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
Acc36I	ACCTGC	1 cut(s)	177
AccII	CGCG	1 cut(s)	189
AccIII	TCCGGA	1 cut(s)	406
AciI	CCGC	4 cut(s)	104, 189, 442, 673
AclWI	GGATC	2 cut(s)	282, 454
AcoI	YGGCCR	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	493
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	27
AhdI	GACNNNNNGTC	1 cut(s)	422
AjnI	CCWGG	1 cut(s)	246
AloI	GAACNNNNNNTCC	2 cut(s)	606, 638
AluBI	AGCT	4 cut(s)	64, 376, 518, 611
AluI	AGCT	4 cut(s)	64, 376, 518, 611
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	3 cut(s)	409, 563, 682
AlwI	GGATC	2 cut(s)	282, 454
Aor13HI	TCCGGA	1 cut(s)	406
AoxI	GGCC	3 cut(s)	154, 383, 531
ApaI	GGGCCC	1 cut(s)	535
ApeKI	GCWGC	6 cut(s)	20, 61, 330, 515, 518, 653
AspLEI	GCGC	3 cut(s)	189, 515, 600
AspS9I	GGNCC	4 cut(s)	145, 384, 531, 532
AsuHPI	GGTGA	2 cut(s)	118, 190
AvaII	GGWCC	1 cut(s)	145
BaeGI	GKGCMC	1 cut(s)	535
BalI	TGGCCA	1 cut(s)	156
BanII	GRGCYC	2 cut(s)	378, 535
BbsI	GAAGAC	1 cut(s)	593
Bbv12I	GWGCWC	1 cut(s)	378
BbvCI	CCTCAGC	1 cut(s)	430
BbvI	GCAGC	6 cut(s)	7, 73, 342, 505, 527, 640
BciT130I	CCWGG	1 cut(s)	248
BcoDI	GTCTC	3 cut(s)	409, 563, 682
BfaI	CTAG	1 cut(s)	327
BfuAI	ACCTGC	1 cut(s)	177
BisI	GCNGC	6 cut(s)	21, 62, 331, 516, 519, 654
BlsI	GCNGC	6 cut(s)	22, 63, 332, 517, 520, 655
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	145
BmeRI	GACNNNNNGTC	1 cut(s)	422
BmgT120I	GGNCC	4 cut(s)	145, 384, 531, 532
BmiI	GGNNCC	2 cut(s)	386, 533
BmrFI	CCNGG	1 cut(s)	248
BmrI	ACTGGG	1 cut(s)	383
BmsI	GCATC	1 cut(s)	477
BmuI	ACTGGG	1 cut(s)	383
BpiI	GAAGAC	1 cut(s)	593
BpmI	CTGGAG	1 cut(s)	633
Bpu10I	CCTNAGC	1 cut(s)	430
BsaI	GGTCTC	2 cut(s)	563, 682
BsaJI	CCNNGG	2 cut(s)	246, 380
BsaWI	WCCGGW	2 cut(s)	175, 406
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	389
Bse3DI	GCAATG	1 cut(s)	76
BseAI	TCCGGA	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	2 cut(s)	246, 380
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	389
BseRI	GAGGAG	1 cut(s)	375
BseSI	GKGCMC	1 cut(s)	535
BseXI	GCAGC	6 cut(s)	7, 73, 342, 505, 527, 640
BsgI	GTGCAG	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	3 cut(s)	156, 385, 533
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	2 cut(s)	176, 407
BslFI	GGGAC	2 cut(s)	19, 410
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	3 cut(s)	409, 563, 682
BsmFI	GGGAC	2 cut(s)	19, 410
BsnI	GGCC	3 cut(s)	156, 385, 533
Bso31I	GGTCTC	2 cut(s)	563, 682
Bsp120I	GGGCCC	1 cut(s)	531
Bsp1286I	GDGCHC	2 cut(s)	378, 535
Bsp13I	TCCGGA	1 cut(s)	406
Bsp143I	GATC	3 cut(s)	274, 459, 634
BspACI	CCGC	4 cut(s)	104, 189, 442, 673
BspANI	GGCC	3 cut(s)	156, 385, 533
BspCNI	CTCAG	1 cut(s)	443
BspEI	TCCGGA	1 cut(s)	406
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	386, 533
BspMI	ACCTGC	1 cut(s)	177
BspPI	GGATC	2 cut(s)	282, 454
BspTNI	GGTCTC	2 cut(s)	563, 682
BsrDI	GCAATG	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	389
BssECI	CCNNGG	2 cut(s)	246, 380
BssMI	GATC	3 cut(s)	274, 459, 634
BssT1I	CCWWGG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	4 cut(s)	97, 139, 145, 580
Bst6I	CTCTTC	1 cut(s)	407
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	430, 522
BstF5I	GGATG	1 cut(s)	5
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	3 cut(s)	189, 515, 600
BstKTI	GATC	3 cut(s)	277, 462, 637
BstMAI	GTCTC	3 cut(s)	409, 563, 682
BstMBI	GATC	3 cut(s)	274, 459, 634
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 193, 382, 512
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	535
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	6 cut(s)	7, 73, 342, 505, 527, 640
BstV2I	GAAGAC	1 cut(s)	593
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
BsuRI	GGCC	3 cut(s)	156, 385, 533
BtsCI	GGATG	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	3 cut(s)	93, 157, 576
BveI	ACCTGC	1 cut(s)	177
CfoI	GCGC	3 cut(s)	189, 515, 600
Cfr13I	GGNCC	4 cut(s)	145, 384, 531, 532
CpoI	CGGWCCG	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	113
CspI	CGGWCCG	1 cut(s)	145
CviAII	CATG	2 cut(s)	184, 562
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	2 cut(s)	430, 522
DpnI	GATC	3 cut(s)	276, 461, 636
DpnII	GATC	3 cut(s)	274, 459, 634
DriI	GACNNNNNGTC	1 cut(s)	422
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	407
Eam1105I	GACNNNNNGTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	407
Ecl136II	GAGCTC	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	380
Eco24I	GRGCYC	2 cut(s)	378, 535
Eco31I	GGTCTC	2 cut(s)	563, 682
Eco47I	GGWCC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	376
Eco57I	CTGAAG	1 cut(s)	493
EcoICRI	GAGCTC	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	380
EcoT38I	GRGCYC	2 cut(s)	378, 535
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	2 cut(s)	187, 565
FaiI	YATR	7 cut(s)	72, 185, 261, 395, 491, 498, 563
FaqI	GGGAC	2 cut(s)	19, 410
FatI	CATG	2 cut(s)	183, 561
FauI	CCCGC	2 cut(s)	182, 666
Fnu4HI	GCNGC	6 cut(s)	21, 62, 331, 516, 519, 654
FriOI	GRGCYC	2 cut(s)	378, 535
Fsp4HI	GCNGC	6 cut(s)	21, 62, 331, 516, 519, 654
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	3 cut(s)	188, 514, 599
GluI	GCNGC	6 cut(s)	21, 62, 331, 516, 519, 654
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	3 cut(s)	156, 385, 533
HapII	CCGG	2 cut(s)	176, 407
HhaI	GCGC	3 cut(s)	189, 515, 600
Hin1II	CATG	2 cut(s)	187, 565
Hin6I	GCGC	3 cut(s)	187, 513, 598
HinP1I	GCGC	3 cut(s)	187, 513, 598
HinfI	GANTC	4 cut(s)	283, 292, 423, 481
HpaII	CCGG	2 cut(s)	176, 407
HphI	GGTGA	2 cut(s)	118, 190
Hpy166II	GTNNAC	2 cut(s)	113, 181
Hpy188I	TCNGA	4 cut(s)	58, 149, 312, 627
Hpy188III	TCNNGA	4 cut(s)	272, 278, 407, 485
Hpy8I	GTNNAC	2 cut(s)	113, 181
HpyAV	CCTTC	5 cut(s)	63, 213, 247, 278, 517
HpyCH4III	ACNGT	4 cut(s)	97, 139, 145, 580
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	3 cut(s)	81, 120, 162
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 193, 382, 512
HpyF3I	CTNAG	2 cut(s)	430, 522
HpySE526I	ACGT	1 cut(s)	621
Hsp92II	CATG	2 cut(s)	187, 565
HspAI	GCGC	3 cut(s)	187, 513, 598
Kpn2I	TCCGGA	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	274, 459, 634
LmnI	GCTCC	2 cut(s)	55, 381
Lsp1109I	GCAGC	6 cut(s)	7, 73, 342, 505, 527, 640
LweI	GCATC	1 cut(s)	477
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	2 cut(s)	139, 230
MalI	GATC	3 cut(s)	276, 461, 636
MboI	GATC	3 cut(s)	274, 459, 634
MboII	GAAGA	4 cut(s)	232, 424, 595, 598
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	2 cut(s)	378, 535
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	3 cut(s)	13, 253, 526
MluNI	TGGCCA	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	432
MmeI	TCCRAC	2 cut(s)	320, 487
MnlI	CCTC	5 cut(s)	19, 353, 414, 439, 610
Mox20I	TGGCCA	1 cut(s)	156
MroI	TCCGGA	1 cut(s)	406
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	1 cut(s)	132
Msp20I	TGGCCA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	2 cut(s)	176, 407
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	87, 193, 382, 512
NdeII	GATC	3 cut(s)	274, 459, 634
NlaIII	CATG	2 cut(s)	187, 565
NlaIV	GGNNCC	2 cut(s)	386, 533
NmuCI	GTSAC	2 cut(s)	139, 230
NspI	RCATGY	1 cut(s)	187
PfeI	GAWTC	3 cut(s)	283, 292, 481
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	6 cut(s)	22, 63, 332, 517, 520, 655
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
PsiI	TTATAA	1 cut(s)	395
Psp124BI	GAGCTC	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	386, 533
PspOMI	GGGCCC	1 cut(s)	531
PspPI	GGNCC	4 cut(s)	145, 384, 531, 532
PsuI	RGATCY	1 cut(s)	459
PsyI	GACNNNGTC	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
Rsr2I	CGGWCCG	1 cut(s)	145
RsrII	CGGWCCG	1 cut(s)	145
SacI	GAGCTC	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	6 cut(s)	21, 62, 331, 516, 519, 654
Sau3AI	GATC	3 cut(s)	274, 459, 634
Sau96I	GGNCC	4 cut(s)	145, 384, 531, 532
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	2 cut(s)	378, 535
SfaNI	GCATC	1 cut(s)	477
SinI	GGWCC	1 cut(s)	145
Sse9I	AATT	3 cut(s)	13, 253, 526
SsiI	CCGC	4 cut(s)	104, 189, 442, 673
SspMI	CTAG	1 cut(s)	327
SstI	GAGCTC	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	4 cut(s)	97, 139, 145, 580
TaiI	ACGT	1 cut(s)	624
TasI	AATT	3 cut(s)	13, 253, 526
TfiI	GAWTC	3 cut(s)	283, 292, 481
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	3 cut(s)	100, 164, 583
TseFI	GTSAC	2 cut(s)	139, 230
TseI	GCWGC	6 cut(s)	20, 61, 330, 515, 518, 653
Tsp45I	GTSAC	2 cut(s)	139, 230
TspDTI	ATGAA	5 cut(s)	209, 305, 329, 436, 644
TspRI	CASTG	3 cut(s)	100, 164, 583
Tth111I	GACNNNGTC	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	145
XceI	RCATGY	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	1 cut(s)	608
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.