Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002502

Physical Location & Seq

Genomic Coordinates Reverse (-)

19707130 .. 19710425

Gene Structure 3296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G140400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTCTTCAGCTGCAGCCTCATCCACTGCCTTTAATTCACCGGACCAGCAACAACAACAACAACACCTCCTCTCTCCCTCCGATCAGCTCTGTTATGTCCATTGCAACTTCTGTGACACTGTCCTCGCTGTGAGTGTTCCTTGCAGCAGTTTGTTCAAGACTGTGACTGTTCGATGTGGCCACTGCAGCAACCTTCTCTCAGTCAACATGCGTGCCCTTCTTCTTCCTCCCCCAAATAACCAACACCTTCCACATCCTTTCTTCAATACTCCTCACAATCTCCTACAGGAGGACATGAGAAATGCCCCGTCATCAAACACATTGATGAATCAACAGCCTAATTACACAAATGAATCAATCATGGCGATTCGGGGAGGAGGCCTTGATCATCAGGAGATACCTAAGCCTCCTGCTGCTGTCAATAGACCTCCGGAGAAGAGACAGAGAGTGCCATCTGCCTACAACCGATTTATCAAGGATGAGATTCAACGTATTAAAGCTGGAAATCCTGATATAAGCCACAGGGAGGCCTTTAGTGCTGCTGCAAAGAATTGGGCCCACTTCCCTCACATCCACTTCGGCCTTATGCCTGATCAGCCCGTGAAGAAAACAAACATGCGCCAGCAGGAAGGAGAGGACATGCTCATGAAAGATGGATTTTTCAGCACTCCTGCAAATGTGGGTGTCTCCCCCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009909 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010093 GO:0010154 GO:0010158 GO:0010229 GO:0010450 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0090706 GO:0099402 GO:0140110 GO:1902183 GO:1903506 GO:1905392 GO:1905393 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

233

Amino Acids

25.88

Weight (kDa)

8.24

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45190 AT2G45190
fragaria_vesca	FvH4_5g00320 FvH4_5g00320 FvH4_7g11260 FvH4_7g11260 FvH4_7g11260
malus_domestica	MD04G1083800.v1.1 MD06G1065700.v1.1 MD07G1117200.v1.1
prunus_persica	Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.5G075800_v2.0.a1
pyrus_communis	pycom02g17050 pycom04g07490 pycom07g10750
rosa_chinensis	RchiOBHm_Chr1g0349391 RchiOBHm_Chr7g0202251
rosa_laevigata	RLG00000003614 RLG00000028552
rosa_multiflora	Rmu_sc0001394.1_g000004 Rmu_sc0004208.1_g000005 Rmu_sc0018468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00254710 Rroxscaffold_4G00305570
rosa_rugosa	Rorug01G0203200 Rorug01G0203300 Rorug07G0069300 Rorug07G0069400
rosa_samantha	Rh1AG220600 Rh1BG186800 Rh1CG205700 Rh1DG216200 Rh7AG196600 Rh7BG197800 Rh7CG207700 Rh7DG203200
rosa_wichuraiana	Rw1G018760 Rw7G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	430
AcoI	YGGCCR	1 cut(s)	178
AfiI	CCNNNNNNNGG	2 cut(s)	289, 526
AgsI	TTSAA	3 cut(s)	157, 265, 488
AluBI	AGCT	3 cut(s)	11, 88, 500
AluI	AGCT	3 cut(s)	11, 88, 500
Alw26I	GTCTC	2 cut(s)	433, 691
Aor13HI	TCCGGA	1 cut(s)	430
AoxI	GGCC	5 cut(s)	178, 379, 528, 555, 580
ApaI	GGGCCC	1 cut(s)	559
ApeKI	GCWGC	7 cut(s)	11, 14, 144, 186, 413, 539, 542
AspLEI	GCGC	1 cut(s)	621
AspS9I	GGNCC	3 cut(s)	43, 555, 556
AsuHPI	GGTGA	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	43
BaeGI	GKGCMC	2 cut(s)	217, 559
BalI	TGGCCA	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	559
BbvI	GCAGC	6 cut(s)	26, 156, 198, 400, 526, 529
BccI	CCATC	2 cut(s)	460, 647
BclI	TGATCA	2 cut(s)	385, 592
BcoDI	GTCTC	2 cut(s)	433, 691
BfmI	CTRYAG	3 cut(s)	12, 184, 284
BisI	GCNGC	7 cut(s)	12, 15, 145, 187, 414, 540, 543
BlsI	GCNGC	7 cut(s)	13, 16, 146, 188, 415, 541, 544
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	3 cut(s)	43, 555, 556
BmiI	GGNNCC	1 cut(s)	557
Bpu10I	CCTNAGC	1 cut(s)	402
BsaWI	WCCGGW	2 cut(s)	40, 430
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 526
Bse3DI	GCAATG	1 cut(s)	100
BseAI	TCCGGA	1 cut(s)	430
BseGI	GGATG	4 cut(s)	20, 253, 484, 570
BseLI	CCNNNNNNNGG	2 cut(s)	289, 526
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	213
BseRI	GAGGAG	3 cut(s)	59, 261, 390
BseSI	GKGCMC	2 cut(s)	217, 559
BseXI	GCAGC	6 cut(s)	26, 156, 198, 400, 526, 529
BshFI	GGCC	5 cut(s)	180, 381, 530, 557, 582
BsiSI	CCGG	2 cut(s)	41, 431
BslI	CCNNNNNNNGG	2 cut(s)	289, 526
BsmAI	GTCTC	2 cut(s)	433, 691
BsnI	GGCC	5 cut(s)	180, 381, 530, 557, 582
Bsp120I	GGGCCC	1 cut(s)	555
Bsp1286I	GDGCHC	2 cut(s)	217, 559
Bsp13I	TCCGGA	1 cut(s)	430
Bsp143I	GATC	3 cut(s)	82, 385, 592
BspANI	GGCC	5 cut(s)	180, 381, 530, 557, 582
BspCNI	CTCAG	1 cut(s)	212
BspEI	TCCGGA	1 cut(s)	430
BspHI	TCATGA	1 cut(s)	645
BspLI	GGNNCC	1 cut(s)	557
BspMAI	CTGCAG	2 cut(s)	16, 188
BsrDI	GCAATG	1 cut(s)	100
BssMI	GATC	3 cut(s)	82, 385, 592
Bst4CI	ACNGT	3 cut(s)	121, 163, 169
Bst6I	CTCTTC	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	213, 623
BstDEI	CTNAG	2 cut(s)	199, 402
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstF5I	GGATG	4 cut(s)	20, 253, 484, 570
BstHHI	GCGC	1 cut(s)	621
BstKTI	GATC	3 cut(s)	85, 388, 595
BstMAI	GTCTC	2 cut(s)	433, 691
BstMBI	GATC	3 cut(s)	82, 385, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	186, 536, 595
BstNSI	RCATGY	3 cut(s)	211, 619, 643
BstSFI	CTRYAG	3 cut(s)	12, 184, 284
BstSLI	GKGCMC	2 cut(s)	217, 559
BstV1I	GCAGC	6 cut(s)	26, 156, 198, 400, 526, 529
BsuRI	GGCC	5 cut(s)	180, 381, 530, 557, 582
BtsCI	GGATG	4 cut(s)	20, 253, 484, 570
BtsI	GCAGTG	2 cut(s)	24, 181
BtsIMutI	CAGTG	3 cut(s)	24, 117, 181
Cac8I	GCNNGC	2 cut(s)	213, 623
CciI	TCATGA	1 cut(s)	645
CfoI	GCGC	1 cut(s)	621
Cfr13I	GGNCC	3 cut(s)	43, 555, 556
CviAII	CATG	6 cut(s)	208, 295, 361, 616, 640, 646
DdeI	CTNAG	2 cut(s)	199, 402
DpnI	GATC	3 cut(s)	84, 387, 594
DpnII	GATC	3 cut(s)	82, 385, 592
EaeI	YGGCCR	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
Eco147I	AGGCCT	2 cut(s)	381, 530
Eco24I	GRGCYC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	43
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	559
FaeI	CATG	6 cut(s)	211, 298, 364, 619, 643, 649
FaiI	YATR	9 cut(s)	96, 209, 296, 362, 515, 587, 617, 641, 647
FatI	CATG	6 cut(s)	207, 294, 360, 615, 639, 645
FbaI	TGATCA	2 cut(s)	385, 592
Fnu4HI	GCNGC	7 cut(s)	12, 15, 145, 187, 414, 540, 543
FokI	GGATG	4 cut(s)	7, 240, 491, 557
FriOI	GRGCYC	1 cut(s)	559
Fsp4HI	GCNGC	7 cut(s)	12, 15, 145, 187, 414, 540, 543
GlaI	GCGC	1 cut(s)	620
GluI	GCNGC	7 cut(s)	12, 15, 145, 187, 414, 540, 543
HaeIII	GGCC	5 cut(s)	180, 381, 530, 557, 582
HapII	CCGG	2 cut(s)	41, 431
HhaI	GCGC	1 cut(s)	621
Hin1II	CATG	6 cut(s)	211, 298, 364, 619, 643, 649
Hin6I	GCGC	1 cut(s)	619
HinP1I	GCGC	1 cut(s)	619
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	4 cut(s)	328, 353, 367, 484
HpaII	CCGG	2 cut(s)	41, 431
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	5 cut(s)	157, 392, 431, 509, 646
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	4 cut(s)	203, 227, 257, 623
HpyCH4III	ACNGT	3 cut(s)	121, 163, 169
HpyCH4IV	ACGT	1 cut(s)	490
HpyCH4V	TGCA	6 cut(s)	14, 105, 144, 186, 545, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	186, 536, 595
HpyF3I	CTNAG	2 cut(s)	199, 402
HpySE526I	ACGT	1 cut(s)	490
Hsp92II	CATG	6 cut(s)	211, 298, 364, 619, 643, 649
HspAI	GCGC	1 cut(s)	619
Kpn2I	TCCGGA	1 cut(s)	430
Ksp22I	TGATCA	2 cut(s)	385, 592
Kzo9I	GATC	3 cut(s)	82, 385, 592
Lsp1109I	GCAGC	6 cut(s)	26, 156, 198, 400, 526, 529
MaeII	ACGT	1 cut(s)	490
MaeIII	GTNAC	2 cut(s)	113, 163
MalI	GATC	3 cut(s)	84, 387, 594
MboI	GATC	3 cut(s)	82, 385, 592
MboII	GAAGA	5 cut(s)	212, 215, 253, 448, 616
MhlI	GDGCHC	2 cut(s)	217, 559
MlsI	TGGCCA	1 cut(s)	180
MluCI	AATT	3 cut(s)	34, 340, 550
MluNI	TGGCCA	1 cut(s)	180
Mox20I	TGGCCA	1 cut(s)	180
MroI	TCCGGA	1 cut(s)	430
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	2 cut(s)	33, 495
MslI	CAYNNNNRTG	2 cut(s)	323, 644
Msp20I	TGGCCA	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	2 cut(s)	41, 431
MwoI	GCNNNNNNNGC	3 cut(s)	186, 536, 595
NdeII	GATC	3 cut(s)	82, 385, 592
NlaIII	CATG	6 cut(s)	211, 298, 364, 619, 643, 649
NlaIV	GGNNCC	1 cut(s)	557
NmuCI	GTSAC	2 cut(s)	113, 163
NspI	RCATGY	3 cut(s)	211, 619, 643
PagI	TCATGA	1 cut(s)	645
PceI	AGGCCT	2 cut(s)	381, 530
PfeI	GAWTC	4 cut(s)	328, 353, 367, 484
PflFI	GACNNNGTC	1 cut(s)	119
PkrI	GCNGC	7 cut(s)	13, 16, 146, 188, 415, 541, 544
PspN4I	GGNNCC	1 cut(s)	557
PspOMI	GGGCCC	1 cut(s)	555
PspPI	GGNCC	3 cut(s)	43, 555, 556
PstI	CTGCAG	2 cut(s)	16, 188
PsyI	GACNNNGTC	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	11
RseI	CAYNNNNRTG	2 cut(s)	323, 644
SaqAI	TTAA	2 cut(s)	33, 495
SatI	GCNGC	7 cut(s)	12, 15, 145, 187, 414, 540, 543
Sau3AI	GATC	3 cut(s)	82, 385, 592
Sau96I	GGNCC	3 cut(s)	43, 555, 556
SduI	GDGCHC	2 cut(s)	217, 559
SetI	ASST	9 cut(s)	13, 69, 90, 195, 249, 403, 430, 493, 502
SfcI	CTRYAG	3 cut(s)	12, 184, 284
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	2 cut(s)	323, 644
Sse9I	AATT	3 cut(s)	34, 340, 550
SseBI	AGGCCT	2 cut(s)	381, 530
StuI	AGGCCT	2 cut(s)	381, 530
TaaI	ACNGT	3 cut(s)	121, 163, 169
TaiI	ACGT	1 cut(s)	493
TaqI	TCGA	1 cut(s)	172
TasI	AATT	3 cut(s)	34, 340, 550
TfiI	GAWTC	4 cut(s)	328, 353, 367, 484
Tru1I	TTAA	2 cut(s)	33, 495
Tru9I	TTAA	2 cut(s)	33, 495
TscAI	CASTG	3 cut(s)	31, 124, 188
TseFI	GTSAC	2 cut(s)	113, 163
TseI	GCWGC	7 cut(s)	11, 14, 144, 186, 413, 539, 542
Tsp45I	GTSAC	2 cut(s)	113, 163
TspDTI	ATGAA	3 cut(s)	341, 366, 662
TspRI	CASTG	3 cut(s)	31, 124, 188
Tth111I	GACNNNGTC	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	43
XagI	CCTNNNNNAGG	1 cut(s)	287
XceI	RCATGY	3 cut(s)	211, 619, 643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.