Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002502

Physical Location & Seq

Genomic Coordinates Reverse (-)

42196474 .. 42199737

Gene Structure 3264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG220600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTCTGCTGCTGCCTCTTCCAACACTGTCTTTTCATCACCGGACCACCTCACCCCCTCCGATCAGCTCTGCTATGTTCACTGCAACTTTTGTGATACTGTTCTCGCGGTAAGCGTTCCTTGCAGCAGTTTGTTCAAGACAGTGACGGTCCGATGCGGCCATTGCAGCAACCTGCTCTCCGTCAACATGCGCGGCCTTCTTCTCCCTGCTGCAGCTAACCAACTTCACCTCGGACATTCTTTCTTCACTCCTCAGAATCTCCCGCAGGAGGAGATCCGAAACGCCCCATCAAACACGTTCTCAAATCAGCCTAACATGATGATGAACGAATCATTTATGCCGATGATTCGAGGAGTTGAGGAGATACCTAAGCCTCCACCTGTTGTTAACAGACGTAAGAGACTATCTTTGTTTATGATATTTTTCACCCAACTCATGCCTCTTGCTGTCTTGCAATATCTTTCTTTCTTTTGTATCCCCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009909 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010093 GO:0010154 GO:0010158 GO:0010229 GO:0010450 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0090706 GO:0099402 GO:0140110 GO:1902183 GO:1903506 GO:1905392 GO:1905393 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

161

Amino Acids

17.94

Weight (kDa)

8.22

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	19 - 71	5.7e-30	YABBY, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45190 AT2G45190
fragaria_vesca	FvH4_5g00320 FvH4_5g00320 FvH4_7g11260 FvH4_7g11260 FvH4_7g11260
malus_domestica	MD04G1083800.v1.1 MD06G1065700.v1.1 MD07G1117200.v1.1
prunus_persica	Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.5G075800_v2.0.a1
pyrus_communis	pycom02g17050 pycom04g07490 pycom07g10750
rosa_chinensis	RchiOBHm_Chr1g0349391 RchiOBHm_Chr7g0202251
rosa_laevigata	RLG00000003614 RLG00000028552
rosa_multiflora	Rmu_sc0001394.1_g000004 Rmu_sc0004208.1_g000005 Rmu_sc0018468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00254710 Rroxscaffold_4G00305570
rosa_rugosa	Rorug01G0203200 Rorug01G0203300 Rorug07G0069300 Rorug07G0069400
rosa_samantha	Rh1AG220600 Rh1BG186800 Rh1CG205700 Rh1DG216200 Rh7AG196600 Rh7BG197800 Rh7CG207700 Rh7DG203200
rosa_wichuraiana	Rw1G018760 Rw7G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	180
AccII	CGCG	2 cut(s)	107, 192
AciI	CCGC	4 cut(s)	107, 156, 192, 263
AclWI	GGATC	1 cut(s)	268
AcoI	YGGCCR	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	268
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	1 cut(s)	136
AluBI	AGCT	2 cut(s)	67, 215
AluI	AGCT	2 cut(s)	67, 215
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	1 cut(s)	268
AoxI	GGCC	2 cut(s)	157, 193
ApeKI	GCWGC	6 cut(s)	8, 11, 123, 165, 209, 212
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	43, 148
AsuHPI	GGTGA	4 cut(s)	30, 43, 218, 418
AvaII	GGWCC	2 cut(s)	43, 148
BbvI	GCAGC	4 cut(s)	135, 177, 196, 224
BccI	CCATC	1 cut(s)	295
BciVI	GTATCC	1 cut(s)	485
BcoDI	GTCTC	1 cut(s)	394
BfmI	CTRYAG	1 cut(s)	210
BfuAI	ACCTGC	1 cut(s)	180
BfuI	GTATCC	1 cut(s)	485
BisI	GCNGC	8 cut(s)	9, 12, 124, 157, 166, 193, 210, 213
BlsI	GCNGC	8 cut(s)	10, 13, 125, 158, 167, 194, 211, 214
Bme18I	GGWCC	2 cut(s)	43, 148
BmgT120I	GGNCC	2 cut(s)	43, 148
BmsI	GCATC	1 cut(s)	143
Bpu10I	CCTNAGC	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	229
BsaWI	WCCGGW	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	266
BseRI	GAGGAG	4 cut(s)	240, 284, 366, 374
BseXI	GCAGC	4 cut(s)	135, 177, 196, 224
Bsh1236I	CGCG	2 cut(s)	107, 192
BshFI	GGCC	2 cut(s)	159, 195
BsiSI	CCGG	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	159, 195
Bsp143I	GATC	2 cut(s)	61, 273
BspACI	CCGC	4 cut(s)	107, 156, 192, 263
BspANI	GGCC	2 cut(s)	159, 195
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	2 cut(s)	107, 192
BspMAI	CTGCAG	1 cut(s)	214
BspMI	ACCTGC	1 cut(s)	180
BspPI	GGATC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	2 cut(s)	61, 273
Bst4CI	ACNGT	4 cut(s)	28, 100, 142, 148
Bst6I	CTCTTC	1 cut(s)	22
BstDEI	CTNAG	2 cut(s)	252, 369
BstFNI	CGCG	2 cut(s)	107, 192
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	64, 276
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	2 cut(s)	61, 273
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 162, 165
BstNSI	RCATGY	1 cut(s)	190
BstSFI	CTRYAG	1 cut(s)	210
BstUI	CGCG	2 cut(s)	107, 192
BstV1I	GCAGC	4 cut(s)	135, 177, 196, 224
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BsuI	GTATCC	1 cut(s)	485
BsuRI	GGCC	2 cut(s)	159, 195
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	3 cut(s)	24, 79, 147
BveI	ACCTGC	1 cut(s)	180
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	2 cut(s)	43, 148
CpoI	CGGWCCG	1 cut(s)	148
CspI	CGGWCCG	1 cut(s)	148
CviAII	CATG	3 cut(s)	187, 316, 436
CviJI	RGCY	6 cut(s)	67, 159, 195, 215, 310, 373
CviKI_1	RGCY	6 cut(s)	67, 159, 195, 215, 310, 373
DdeI	CTNAG	2 cut(s)	252, 369
DpnI	GATC	2 cut(s)	63, 275
DpnII	GATC	2 cut(s)	61, 273
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco47I	GGWCC	2 cut(s)	43, 148
FaeI	CATG	3 cut(s)	190, 319, 439
FaiI	YATR	6 cut(s)	75, 188, 317, 338, 416, 437
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FatI	CATG	3 cut(s)	186, 315, 435
FauI	CCCGC	1 cut(s)	270
Fnu4HI	GCNGC	8 cut(s)	9, 12, 124, 157, 166, 193, 210, 213
Fsp4HI	GCNGC	8 cut(s)	9, 12, 124, 157, 166, 193, 210, 213
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	8 cut(s)	9, 12, 124, 157, 166, 193, 210, 213
HaeIII	GGCC	2 cut(s)	159, 195
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	190, 319, 439
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HincII	GTYRAC	2 cut(s)	184, 388
HindII	GTYRAC	2 cut(s)	184, 388
HinfI	GANTC	3 cut(s)	256, 329, 346
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	4 cut(s)	30, 43, 218, 418
Hpy166II	GTNNAC	3 cut(s)	79, 184, 388
Hpy188I	TCNGA	5 cut(s)	61, 152, 233, 255, 278
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	3 cut(s)	79, 184, 388
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	4 cut(s)	28, 100, 142, 148
HpyCH4IV	ACGT	2 cut(s)	296, 394
HpyCH4V	TGCA	5 cut(s)	84, 123, 165, 212, 454
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 162, 165
HpyF3I	CTNAG	2 cut(s)	252, 369
HpySE526I	ACGT	2 cut(s)	296, 394
Hsp92II	CATG	3 cut(s)	190, 319, 439
HspAI	GCGC	1 cut(s)	190
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	61, 273
LpnPI	CCDG	5 cut(s)	54, 185, 219, 251, 393
Lsp1109I	GCAGC	4 cut(s)	135, 177, 196, 224
LweI	GCATC	1 cut(s)	143
MaeII	ACGT	2 cut(s)	296, 394
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	2 cut(s)	63, 275
MboI	GATC	2 cut(s)	61, 273
MboII	GAAGA	3 cut(s)	9, 191, 235
MflI	RGATCY	1 cut(s)	273
MmeI	TCCRAC	1 cut(s)	45
MseI	TTAA	2 cut(s)	387, 484
MslI	CAYNNNNRTG	1 cut(s)	320
MspI	CCGG	1 cut(s)	41
MvnI	CGCG	2 cut(s)	107, 192
MwoI	GCNNNNNNNGC	3 cut(s)	120, 162, 165
NdeII	GATC	2 cut(s)	61, 273
NlaIII	CATG	3 cut(s)	190, 319, 439
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	190
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PfeI	GAWTC	3 cut(s)	256, 329, 346
PkrI	GCNGC	8 cut(s)	10, 13, 125, 158, 167, 194, 211, 214
PspPI	GGNCC	2 cut(s)	43, 148
PstI	CTGCAG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	320
Rsr2I	CGGWCCG	1 cut(s)	148
RsrII	CGGWCCG	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	387, 484
SatI	GCNGC	8 cut(s)	9, 12, 124, 157, 166, 193, 210, 213
Sau3AI	GATC	2 cut(s)	61, 273
Sau96I	GGNCC	2 cut(s)	43, 148
SetI	ASST	9 cut(s)	51, 69, 174, 217, 231, 299, 370, 382, 397
SfaNI	GCATC	1 cut(s)	143
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	2 cut(s)	43, 148
SmiMI	CAYNNNNRTG	1 cut(s)	320
SsiI	CCGC	4 cut(s)	107, 156, 192, 263
TaaI	ACNGT	4 cut(s)	28, 100, 142, 148
TaiI	ACGT	2 cut(s)	299, 397
TaqI	TCGA	1 cut(s)	349
TauI	GCSGC	2 cut(s)	159, 195
TfiI	GAWTC	3 cut(s)	256, 329, 346
Tru1I	TTAA	2 cut(s)	387, 484
Tru9I	TTAA	2 cut(s)	387, 484
TscAI	CASTG	3 cut(s)	31, 86, 147
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	6 cut(s)	8, 11, 123, 165, 209, 212
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	24, 338
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	3 cut(s)	31, 86, 147
VpaK11BI	GGWCC	2 cut(s)	43, 148
XceI	RCATGY	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.