Rorug07G0069300

Axial regulator YABBY 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002502
Physical Location & Seq
Reverse (-)
5249362 .. 5252387
3026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0069300.1

Sequence Viewer

Length: 786 bp
ATGCATCACATACACCATGTAAACCTCGACATCAAGGCCGTGGAGGGTGTTGGCTTTCACCAATACTATTGCTGTGGGTCTCTGATGGAGCCGAATTGGGGACTGAAGAATTGCTGTAACCATGAGCAAGTGGTGTTTCTCATTACTGTTTCTGTCTGCACTGTTGTTATACTTGCGCTTTGGAGGACAATACTGCTGAGACCGTTTAAGCTTGTCACTGTCTTTCTTCATGAGGCTAGCCATGCTATCGCTTGTAAACTAACATGTGGTCATGTGGAAGGAATGCAAGTTCATGCAGATGAAGGTGGAGCCACACAAACCCGTGGTGGTGTATACTGGTTAATTCTGCCAGCTGGATATCTAGGTTCATCCTTTTGGGGGATGCTCTTGATTCTTGCATCTACAAATCTTCTTACAGCACGGATAGCCGCTGGATGTTTTCTAGCTGCCCTATTTATTACTCTCTTTATAGCTAAAAATTGGACACTTCGAGGACTTTGTATAGGATTCATTCTTTTCCTTGGTGTAATTTGGGCTCTGCAAGAAACAACAAAAGTTCGTATACTTCGGTATATTATTCTCTTTATAGGTGTGATGAACAGCTTATTTTCAGTATATGATATCTATGATGATCTAATATCCCGTAGAGTTCATTCTAGTGATGCTGAGAAGTTTTCAGAAGAGTGTCCTTGCTGTACTGGTTGTGGATGGGGTGTCATATGGGGCTTAATATCTTTCTTGCTTCTCTGTGGAGCCATGTACCTTGGTCTTGTGATTTTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YABBY

Protein Analysis

261

Amino Acids

28.98

Weight (kDa)

7.12

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M50B PF13398 52 - 251 1.1e-54 Peptidase M50B-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 333, 562
AciI CCGC 1 cut(s) 429
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 2 cut(s) 697, 761
AfiI CCNNNNNNNGG 2 cut(s) 98, 378
AflIII ACRYGT 1 cut(s) 263
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
AluBI AGCT 5 cut(s) 211, 353, 446, 473, 603
AluI AGCT 5 cut(s) 211, 353, 446, 473, 603
Alw26I GTCTC 2 cut(s) 84, 193
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 446
AspLEI GCGC 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 50
AsuNHI GCTAGC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 538
BbvI GCAGC 1 cut(s) 433
BccI CCATC 2 cut(s) 79, 702
BceAI ACGGC 1 cut(s) 23
BcoDI GTCTC 2 cut(s) 84, 193
BfaI CTAG 4 cut(s) 237, 362, 443, 657
BisI GCNGC 2 cut(s) 429, 447
BlsI GCNGC 2 cut(s) 430, 448
BmiI GGNNCC 3 cut(s) 90, 310, 754
BmsI GCATC 4 cut(s) 13, 372, 407, 652
BmtI GCTAGC 1 cut(s) 240
BsaI GGTCTC 2 cut(s) 84, 193
BsaJI CCNNGG 4 cut(s) 39, 322, 520, 763
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 378
Bse1I ACTGG 2 cut(s) 341, 703
BseDI CCNNGG 4 cut(s) 39, 322, 520, 763
BseGI GGATG 4 cut(s) 368, 387, 440, 713
BseLI CCNNNNNNNGG 2 cut(s) 98, 378
BseMII CTCAG 2 cut(s) 188, 657
BseNI ACTGG 2 cut(s) 341, 703
BseXI GCAGC 1 cut(s) 433
BsgI GTGCAG 1 cut(s) 142
BshFI GGCC 1 cut(s) 38
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 98, 378
BsmAI GTCTC 2 cut(s) 84, 193
BsmFI GGGAC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 288
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 2 cut(s) 84, 193
Bsp1286I GDGCHC 1 cut(s) 538
Bsp143I GATC 1 cut(s) 631
BspACI CCGC 1 cut(s) 429
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 2 cut(s) 189, 658
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 3 cut(s) 90, 310, 754
BspOI GCTAGC 1 cut(s) 240
BspTNI GGTCTC 2 cut(s) 84, 193
BsrI ACTGG 2 cut(s) 341, 703
BssECI CCNNGG 4 cut(s) 39, 322, 520, 763
BssMI GATC 1 cut(s) 631
BssNAI GTATAC 2 cut(s) 334, 563
BssT1I CCWWGG 2 cut(s) 520, 763
Bst1107I GTATAC 2 cut(s) 334, 563
Bst4CI ACNGT 4 cut(s) 148, 163, 204, 220
Bst6I CTCTTC 1 cut(s) 675
BstC8I GCNNGC 2 cut(s) 238, 351
BstDEI CTNAG 2 cut(s) 197, 666
BstDSI CCRYGG 2 cut(s) 39, 322
BstF5I GGATG 4 cut(s) 368, 387, 440, 713
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 1 cut(s) 634
BstMAI GTCTC 2 cut(s) 84, 193
BstMBI GATC 1 cut(s) 631
BstMWI GCNNNNNNNGC 2 cut(s) 242, 425
BstNSI RCATGY 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 433
BstZ17I GTATAC 2 cut(s) 334, 563
BsuRI GGCC 1 cut(s) 38
BtgI CCRYGG 2 cut(s) 39, 322
BtsCI GGATG 4 cut(s) 368, 387, 440, 713
BtsIMutI CAGTG 2 cut(s) 159, 216
Cac8I GCNNGC 2 cut(s) 238, 351
CciI TCATGA 1 cut(s) 229
CfoI GCGC 1 cut(s) 178
Csp6I GTAC 2 cut(s) 696, 760
CviAII CATG 8 cut(s) 17, 122, 230, 242, 264, 272, 293, 757
CviQI GTAC 2 cut(s) 696, 760
DdeI CTNAG 2 cut(s) 197, 666
DpnI GATC 1 cut(s) 633
DpnII GATC 1 cut(s) 631
Eam1104I CTCTTC 1 cut(s) 675
EarI CTCTTC 1 cut(s) 675
Eco130I CCWWGG 2 cut(s) 520, 763
Eco24I GRGCYC 1 cut(s) 538
Eco31I GGTCTC 2 cut(s) 84, 193
Eco32I GATATC 2 cut(s) 359, 622
Eco57I CTGAAG 1 cut(s) 125
EcoRV GATATC 2 cut(s) 359, 622
EcoT14I CCWWGG 2 cut(s) 520, 763
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 538
ErhI CCWWGG 2 cut(s) 520, 763
FaeI CATG 8 cut(s) 20, 125, 233, 245, 267, 275, 296, 760
FaqI GGGAC 1 cut(s) 114
FatI CATG 8 cut(s) 16, 121, 229, 241, 263, 271, 292, 756
FauNDI CATATG 1 cut(s) 719
FblI GTMKAC 2 cut(s) 333, 562
Fnu4HI GCNGC 2 cut(s) 429, 447
FokI GGATG 4 cut(s) 355, 394, 447, 720
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 2 cut(s) 429, 447
FspBI CTAG 4 cut(s) 237, 362, 443, 657
GlaI GCGC 1 cut(s) 177
GluI GCNGC 2 cut(s) 429, 447
HaeIII GGCC 1 cut(s) 38
HhaI GCGC 1 cut(s) 178
Hin1II CATG 8 cut(s) 20, 125, 233, 245, 267, 275, 296, 760
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 2 cut(s) 391, 507
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 4 cut(s) 22, 257, 334, 563
Hpy188I TCNGA 2 cut(s) 84, 679
Hpy188III TCNNGA 2 cut(s) 230, 388
Hpy8I GTNNAC 4 cut(s) 22, 257, 334, 563
HpyAV CCTTC 2 cut(s) 272, 296
HpyCH4III ACNGT 4 cut(s) 148, 163, 204, 220
HpyCH4V TGCA 6 cut(s) 4, 159, 286, 296, 398, 541
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 425
HpyF3I CTNAG 2 cut(s) 197, 666
Hsp92II CATG 8 cut(s) 20, 125, 233, 245, 267, 275, 296, 760
HspAI GCGC 1 cut(s) 176
Kzo9I GATC 1 cut(s) 631
LmnI GCTCC 3 cut(s) 88, 308, 752
LpnPI CCDG 5 cut(s) 322, 339, 363, 417, 684
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 4 cut(s) 13, 372, 407, 652
MaeI CTAG 4 cut(s) 237, 362, 443, 657
MaeIII GTNAC 2 cut(s) 116, 214
MalI GATC 1 cut(s) 633
MboI GATC 1 cut(s) 631
MboII GAAGA 4 cut(s) 118, 218, 401, 692
MhlI GDGCHC 1 cut(s) 538
MluCI AATT 5 cut(s) 94, 109, 342, 478, 528
MnlI CCTC 5 cut(s) 35, 37, 177, 226, 485
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 207, 341, 728
MslI CAYNNNNRTG 2 cut(s) 297, 657
MspA1I CMGCKG 2 cut(s) 353, 431
Mva1269I GAATGC 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 242, 425
NdeI CATATG 1 cut(s) 719
NdeII GATC 1 cut(s) 631
NheI GCTAGC 1 cut(s) 236
NlaIII CATG 8 cut(s) 20, 125, 233, 245, 267, 275, 296, 760
NlaIV GGNNCC 3 cut(s) 90, 310, 754
NmuCI GTSAC 1 cut(s) 214
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 267
PagI TCATGA 1 cut(s) 229
PciI ACATGT 1 cut(s) 263
PctI GAATGC 1 cut(s) 288
PfeI GAWTC 2 cut(s) 391, 507
PkrI GCNGC 2 cut(s) 430, 448
PscI ACATGT 1 cut(s) 263
PspN4I GGNNCC 3 cut(s) 90, 310, 754
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 2 cut(s) 697, 761
RsaNI GTAC 2 cut(s) 696, 760
RseI CAYNNNNRTG 2 cut(s) 297, 657
SaqAI TTAA 3 cut(s) 207, 341, 728
SatI GCNGC 2 cut(s) 429, 447
Sau3AI GATC 1 cut(s) 631
SduI GDGCHC 1 cut(s) 538
SfaNI GCATC 4 cut(s) 13, 372, 407, 652
SmiMI CAYNNNNRTG 2 cut(s) 297, 657
Sse9I AATT 5 cut(s) 94, 109, 342, 478, 528
SsiI CCGC 1 cut(s) 429
SspMI CTAG 4 cut(s) 237, 362, 443, 657
StyI CCWWGG 2 cut(s) 520, 763
TaaI ACNGT 4 cut(s) 148, 163, 204, 220
TaqI TCGA 2 cut(s) 27, 490
TasI AATT 5 cut(s) 94, 109, 342, 478, 528
TatI WGTACW 1 cut(s) 695
TauI GCSGC 1 cut(s) 431
TfiI GAWTC 2 cut(s) 391, 507
Tru1I TTAA 3 cut(s) 207, 341, 728
Tru9I TTAA 3 cut(s) 207, 341, 728
TscAI CASTG 2 cut(s) 166, 223
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 446
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 7 cut(s) 218, 281, 315, 357, 499, 611, 641
TspGWI ACGGA 1 cut(s) 436
TspRI CASTG 2 cut(s) 166, 223
XceI RCATGY 1 cut(s) 267
XmiI GTMKAC 2 cut(s) 333, 562
XspI CTAG 4 cut(s) 237, 362, 443, 657
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.