Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002502

Physical Location & Seq

Genomic Coordinates Reverse (-)

44681095 .. 44683934

Gene Structure 2840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG205700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCGCGGCCTTCTTCTCCCTGCTGCAGCTAACCAACTTCACCTCGGACATTCTTTCTTCACTCCTCAGAATCTCCCGCAGGAGGAGATCCGAAACGCCCCATCAAACACGTTCTCAAATCAGCCTAACATGATGATGAACGAATCATTTATGCCGATGATTCGAGGAGTTGAGGAGATACCTAAGCCTCCACCTGTTGTTAACAGACCTCCGGAGAAGAGACAGAGAGTGCCATCTGCCTACAACCGCTTCATCAAGGAAGAGATACAACGTATCAAAGCTGGAAACCCTGATATTAGCCACAGAGAGGCCTTCAGTGCTGCTGCCAAGAATTGGGCCCACTTCCCTCACATCCACTTTGGCCTGATGCCTGATCAACCCGTGAAGAAAGCCAATATTCGCCAGGATGGAGAGGACATGCTCATCAAAGACAATGGATTTTTCAGCGCTCCTGCAAATTTGGGTGTCTCTCCATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009909 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010093 GO:0010154 GO:0010158 GO:0010229 GO:0010450 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0090706 GO:0099402 GO:0140110 GO:1902183 GO:1903506 GO:1905392 GO:1905393 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

159

Amino Acids

17.98

Weight (kDa)

9.39

Isoelectric Point (pI)

57.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY	PF04690	62 - 121	2.6e-38	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45190 AT2G45190
fragaria_vesca	FvH4_5g00320 FvH4_5g00320 FvH4_7g11260 FvH4_7g11260 FvH4_7g11260
malus_domestica	MD04G1083800.v1.1 MD06G1065700.v1.1 MD07G1117200.v1.1
prunus_persica	Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.5G075800_v2.0.a1
pyrus_communis	pycom02g17050 pycom04g07490 pycom07g10750
rosa_chinensis	RchiOBHm_Chr1g0349391 RchiOBHm_Chr7g0202251
rosa_laevigata	RLG00000003614 RLG00000028552
rosa_multiflora	Rmu_sc0001394.1_g000004 Rmu_sc0004208.1_g000005 Rmu_sc0018468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00254710 Rroxscaffold_4G00305570
rosa_rugosa	Rorug01G0203200 Rorug01G0203300 Rorug07G0069300 Rorug07G0069400
rosa_samantha	Rh1AG220600 Rh1BG186800 Rh1CG205700 Rh1DG216200 Rh7AG196600 Rh7BG197800 Rh7CG207700 Rh7DG203200
rosa_wichuraiana	Rw1G018760 Rw7G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	333
AccII	CGCG	1 cut(s)	6
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	3 cut(s)	6, 77, 247
AclWI	GGATC	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	457
AcuI	CTGAAG	1 cut(s)	298
AfeI	AGCGCT	1 cut(s)	448
AfiI	CCNNNNNNNGG	3 cut(s)	82, 307, 333
AflIII	ACRYGT	1 cut(s)	108
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	2 cut(s)	29, 281
AluI	AGCT	2 cut(s)	29, 281
Alw26I	GTCTC	2 cut(s)	214, 472
AlwI	GGATC	1 cut(s)	82
Aor13HI	TCCGGA	1 cut(s)	211
Aor51HI	AGCGCT	1 cut(s)	448
AoxI	GGCC	4 cut(s)	7, 309, 336, 361
ApaI	GGGCCC	1 cut(s)	340
ApeKI	GCWGC	4 cut(s)	23, 26, 320, 323
ApoI	RAATTY	1 cut(s)	457
AspLEI	GCGC	2 cut(s)	6, 449
AspS9I	GGNCC	2 cut(s)	336, 337
AsuHPI	GGTGA	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	340
BanII	GRGCYC	1 cut(s)	340
BbvI	GCAGC	4 cut(s)	10, 38, 307, 310
BccI	CCATC	3 cut(s)	109, 241, 401
BciT130I	CCWGG	1 cut(s)	404
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	2 cut(s)	214, 472
BfmI	CTRYAG	1 cut(s)	24
BfoI	RGCGCY	1 cut(s)	450
BisI	GCNGC	5 cut(s)	7, 24, 27, 321, 324
BlsI	GCNGC	5 cut(s)	8, 25, 28, 322, 325
Bme1390I	CCNGG	1 cut(s)	404
BmgT120I	GGNCC	2 cut(s)	336, 337
BmiI	GGNNCC	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	404
BmsI	GCATC	1 cut(s)	357
Bpu10I	CCTNAGC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	43
BsaWI	WCCGGW	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 307, 333
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	2 cut(s)	351, 412
BseLI	CCNNNNNNNGG	3 cut(s)	82, 307, 333
BseMII	CTCAG	1 cut(s)	80
BseRI	GAGGAG	4 cut(s)	54, 98, 180, 188
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	4 cut(s)	10, 38, 307, 310
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	4 cut(s)	9, 311, 338, 363
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	3 cut(s)	82, 307, 333
BsmAI	GTCTC	2 cut(s)	214, 472
BsnI	GGCC	4 cut(s)	9, 311, 338, 363
Bsp120I	GGGCCC	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp13I	TCCGGA	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	87, 373
BspACI	CCGC	3 cut(s)	6, 77, 247
BspANI	GGCC	4 cut(s)	9, 311, 338, 363
BspCNI	CTCAG	1 cut(s)	79
BspEI	TCCGGA	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	338
BspMAI	CTGCAG	1 cut(s)	28
BspPI	GGATC	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	2 cut(s)	87, 373
Bst2UI	CCWGG	1 cut(s)	404
Bst6I	CTCTTC	2 cut(s)	212, 255
BstDEI	CTNAG	2 cut(s)	66, 183
BstF5I	GGATG	2 cut(s)	351, 412
BstFNI	CGCG	1 cut(s)	6
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	2 cut(s)	6, 449
BstKTI	GATC	2 cut(s)	90, 376
BstMAI	GTCTC	2 cut(s)	214, 472
BstMBI	GATC	2 cut(s)	87, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	1 cut(s)	404
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	402
BstSFI	CTRYAG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	340
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	4 cut(s)	10, 38, 307, 310
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	4 cut(s)	9, 311, 338, 363
BtsCI	GGATG	2 cut(s)	351, 412
BtsIMutI	CAGTG	1 cut(s)	322
CfoI	GCGC	2 cut(s)	6, 449
Cfr13I	GGNCC	2 cut(s)	336, 337
CviAII	CATG	2 cut(s)	130, 418
DdeI	CTNAG	2 cut(s)	66, 183
DpnI	GATC	2 cut(s)	89, 375
DpnII	GATC	2 cut(s)	87, 373
Eam1104I	CTCTTC	2 cut(s)	212, 255
EarI	CTCTTC	2 cut(s)	212, 255
Eco147I	AGGCCT	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	340
Eco47III	AGCGCT	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	340
FaeI	CATG	2 cut(s)	133, 421
FaiI	YATR	4 cut(s)	131, 152, 419, 475
FatI	CATG	2 cut(s)	129, 417
FauI	CCCGC	1 cut(s)	84
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	5 cut(s)	7, 24, 27, 321, 324
FokI	GGATG	2 cut(s)	338, 419
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	5 cut(s)	7, 24, 27, 321, 324
GlaI	GCGC	2 cut(s)	5, 448
GluI	GCNGC	5 cut(s)	7, 24, 27, 321, 324
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	4 cut(s)	9, 311, 338, 363
HapII	CCGG	1 cut(s)	212
HhaI	GCGC	2 cut(s)	6, 449
Hin1II	CATG	2 cut(s)	133, 421
Hin6I	GCGC	2 cut(s)	4, 447
HinP1I	GCGC	2 cut(s)	4, 447
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	3 cut(s)	70, 143, 160
HpaI	GTTAAC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	3 cut(s)	47, 69, 92
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	20, 322
HpyCH4IV	ACGT	2 cut(s)	110, 271
HpyCH4V	TGCA	2 cut(s)	26, 455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	2 cut(s)	66, 183
HpySE526I	ACGT	2 cut(s)	110, 271
Hsp92II	CATG	2 cut(s)	133, 421
HspAI	GCGC	2 cut(s)	4, 447
Kpn2I	TCCGGA	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	373
KspAI	GTTAAC	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	87, 373
LmnI	GCTCC	1 cut(s)	454
Lsp1109I	GCAGC	4 cut(s)	10, 38, 307, 310
LweI	GCATC	1 cut(s)	357
MaeII	ACGT	2 cut(s)	110, 271
MalI	GATC	2 cut(s)	89, 375
MboI	GATC	2 cut(s)	87, 373
MboII	GAAGA	5 cut(s)	5, 49, 229, 272, 397
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	2 cut(s)	331, 457
MroI	TCCGGA	1 cut(s)	211
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	134
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	404
MvaI	CCWGG	1 cut(s)	404
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeII	GATC	2 cut(s)	87, 373
NlaIII	CATG	2 cut(s)	133, 421
NlaIV	GGNNCC	1 cut(s)	338
NspI	RCATGY	1 cut(s)	421
PceI	AGGCCT	1 cut(s)	311
PfeI	GAWTC	3 cut(s)	70, 143, 160
PflMI	CCANNNNNTGG	1 cut(s)	333
PkrI	GCNGC	5 cut(s)	8, 25, 28, 322, 325
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	1 cut(s)	338
PspOMI	GGGCCC	1 cut(s)	336
PspPI	GGNCC	2 cut(s)	336, 337
PstI	CTGCAG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	87
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	5 cut(s)	7, 24, 27, 321, 324
Sau3AI	GATC	2 cut(s)	87, 373
Sau96I	GGNCC	2 cut(s)	336, 337
ScrFI	CCNGG	1 cut(s)	404
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	8 cut(s)	31, 45, 113, 184, 196, 211, 274, 283
SfaNI	GCATC	1 cut(s)	357
SfcI	CTRYAG	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	2 cut(s)	331, 457
SseBI	AGGCCT	1 cut(s)	311
SsiI	CCGC	3 cut(s)	6, 77, 247
SspI	AATATT	1 cut(s)	397
StuI	AGGCCT	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	402
TaiI	ACGT	2 cut(s)	113, 274
TaqI	TCGA	1 cut(s)	163
TasI	AATT	2 cut(s)	331, 457
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	3 cut(s)	70, 143, 160
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	4 cut(s)	23, 26, 320, 323
TspDTI	ATGAA	2 cut(s)	152, 241
TspRI	CASTG	1 cut(s)	322
Van91I	CCANNNNNTGG	1 cut(s)	333
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.