Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002502

Physical Location & Seq

Genomic Coordinates Forward (+)

10958523 .. 10961674

Gene Structure 3152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g10750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTTTAAAGAGATTCGATTCTCTTCAAAAGCGAATTTAATCAAAAGCAAATTTAAACTACATTATTATCAAATATTATTTGTTCAAAAAAAAAAAAAAAAAAAACTATGTTACATCACACCCGGTCCCCAACCCAACTATATAATTAGTGCCATCTCTCTCTCTTTTCTTTTCTCTTTCTTCTCGTTCCTTAATAGTAACTCATCATCAACAATTCTCAAGCAGCGAGATCAGATCCAAAACTTGTCTACTACCCATCATAAATATCCCACTGATAGATCGATCAGTCAAAATCCCATCAATCAAATCACCAAATCAACATTATCACCATCATCAGATCATCATCATCAAATTAGAAAGAAAGAAAGAATGTCTTCAGCTGCAGCATCATCCACTGTCTTTAACTCACAGGACCAACAACACCACCACCTCCTCTCCCCCACCGATCAGCTCTGTTATGTCCATTGCAACTTCTGTGACACCGTCCTTGCTGTGAGTGTTCCTTGCAGCAGTTTGTTCAAGACTGTGACTGTTCGATGTGGCCACTGCAGCAACCTTATCTCCGTCAACATGCGTGCCCTTCTTCTTCCTCCGGCTAATAATAATAACCAACTTCACCTTCCTCATCCTTTCTTCTCCACTCCTCACAATCTCCTTCAGGAGGAAATCCGAAACACCCCATCCAACACAATGATGAATCACCAGCCTTGTTACACAAATGAATCGATCATGCCAATCCGAGGAGAAGGCTTTGATCATCTTCAGGAGATACCTAAGCCTCCTGCAGTTGTCAACAGACCTCCGGAGAAGAGACAGAGAGTGCCATCTGCCTACAACCGCTTTATCAAAGAGGAGATACAACGTATTAAAGCTGGAAATCCTGATATAAGCCACAGAGAGGCCTTTAGTGCTGCTGCAAAGAATTGGGCCCACTTCCCTCACATCCACTTCGGCCTTATGCCTGATCAGCCCGTGAAGAAAACTAACATGCGCCAGCAGGAAGGAGATGACATGCTCGTGAAAGATGGATTTTTCAGTACTCCTGCCAATATGGGTGTCTCCCCGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009909 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010093 GO:0010154 GO:0010158 GO:0010229 GO:0010450 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0090706 GO:0099402 GO:0140110 GO:1902183 GO:1903506 GO:1905392 GO:1905393 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

357

Amino Acids

40.66

Weight (kDa)

9.59

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	147 - 201	2e-28	YABBY, N-terminal
YABBY	PF04690	259 - 318	1.6e-37	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45190 AT2G45190
fragaria_vesca	FvH4_5g00320 FvH4_5g00320 FvH4_7g11260 FvH4_7g11260 FvH4_7g11260
malus_domestica	MD04G1083800.v1.1 MD06G1065700.v1.1 MD07G1117200.v1.1
prunus_persica	Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.5G075800_v2.0.a1
pyrus_communis	pycom02g17050 pycom04g07490 pycom07g10750
rosa_chinensis	RchiOBHm_Chr1g0349391 RchiOBHm_Chr7g0202251
rosa_laevigata	RLG00000003614 RLG00000028552
rosa_multiflora	Rmu_sc0001394.1_g000004 Rmu_sc0004208.1_g000005 Rmu_sc0018468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00254710 Rroxscaffold_4G00305570
rosa_rugosa	Rorug01G0203200 Rorug01G0203300 Rorug07G0069300 Rorug07G0069400
rosa_samantha	Rh1AG220600 Rh1BG186800 Rh1CG205700 Rh1DG216200 Rh7AG196600 Rh7BG197800 Rh7CG207700 Rh7DG203200
rosa_wichuraiana	Rw1G018760 Rw7G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	248
AccIII	TCCGGA	1 cut(s)	802
AciI	CCGC	1 cut(s)	838
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	541
AcsI	RAATTY	2 cut(s)	34, 50
AcuI	CTGAAG	3 cut(s)	360, 641, 746
AfaI	GTAC	2 cut(s)	1039, 1067
AfiI	CCNNNNNNNGG	3 cut(s)	661, 740, 898
AgsI	TTSAA	3 cut(s)	27, 86, 520
AjuI	GAANNNNNNNTTGG	2 cut(s)	603, 635
AluBI	AGCT	3 cut(s)	380, 451, 872
AluI	AGCT	3 cut(s)	380, 451, 872
Alw26I	GTCTC	2 cut(s)	805, 1063
AlwI	GGATC	1 cut(s)	229
Aor13HI	TCCGGA	1 cut(s)	802
AoxI	GGCC	4 cut(s)	541, 900, 927, 952
ApaI	GGGCCC	1 cut(s)	931
ApeKI	GCWGC	7 cut(s)	223, 380, 383, 507, 549, 911, 914
ApoI	RAATTY	2 cut(s)	34, 50
Asp700I	GAANNNNTTC	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	993
AspS9I	GGNCC	4 cut(s)	125, 412, 927, 928
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	4 cut(s)	301, 318, 608, 692
AvaII	GGWCC	2 cut(s)	125, 412
BaeGI	GKGCMC	2 cut(s)	580, 931
BalI	TGGCCA	1 cut(s)	543
BanII	GRGCYC	1 cut(s)	931
BauI	CACGAG	1 cut(s)	1016
BbsI	GAAGAC	1 cut(s)	366
BbvI	GCAGC	7 cut(s)	235, 367, 395, 519, 561, 898, 901
BccI	CCATC	7 cut(s)	161, 264, 305, 337, 688, 832, 1019
BclI	TGATCA	2 cut(s)	754, 964
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	805, 1063
BfmI	CTRYAG	3 cut(s)	381, 547, 783
BisI	GCNGC	7 cut(s)	224, 381, 384, 508, 550, 912, 915
BlsI	GCNGC	7 cut(s)	225, 382, 385, 509, 551, 913, 916
BmcAI	AGTACT	1 cut(s)	1039
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	2 cut(s)	125, 412
BmgT120I	GGNCC	4 cut(s)	125, 412, 927, 928
BmiI	GGNNCC	2 cut(s)	127, 929
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	366
Bpu10I	CCTNAGC	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	123
Bsa29I	ATCGAT	2 cut(s)	281, 725
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	739
BsaWI	WCCGGW	1 cut(s)	802
BsaXI	ACNNNNNCTCC	4 cut(s)	419, 449, 545, 575
Bsc4I	CCNNNNNNNGG	3 cut(s)	661, 740, 898
Bse3DI	GCAATG	1 cut(s)	463
Bse8I	GATNNNNATC	1 cut(s)	342
BseAI	TCCGGA	1 cut(s)	802
BseCI	ATCGAT	2 cut(s)	281, 725
BseDI	CCNNGG	1 cut(s)	739
BseGI	GGATG	4 cut(s)	389, 625, 680, 942
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	3 cut(s)	661, 740, 898
BseMI	GCAATG	1 cut(s)	463
BseRI	GAGGAG	4 cut(s)	422, 633, 756, 866
BseSI	GKGCMC	2 cut(s)	580, 931
BseXI	GCAGC	7 cut(s)	235, 367, 395, 519, 561, 898, 901
BshFI	GGCC	4 cut(s)	543, 902, 929, 954
BshVI	ATCGAT	2 cut(s)	281, 725
BsiSI	CCGG	3 cut(s)	123, 593, 803
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	3 cut(s)	661, 740, 898
BsmAI	GTCTC	2 cut(s)	805, 1063
BsmFI	GGGAC	1 cut(s)	111
BsnI	GGCC	4 cut(s)	543, 902, 929, 954
Bsp120I	GGGCCC	1 cut(s)	927
Bsp1286I	GDGCHC	2 cut(s)	580, 931
Bsp13I	TCCGGA	1 cut(s)	802
Bsp143I	GATC	9 cut(s)	229, 234, 278, 282, 337, 445, 726, 754, 964
BspACI	CCGC	1 cut(s)	838
BspANI	GGCC	4 cut(s)	543, 902, 929, 954
BspDI	ATCGAT	2 cut(s)	281, 725
BspEI	TCCGGA	1 cut(s)	802
BspLI	GGNNCC	2 cut(s)	127, 929
BspMAI	CTGCAG	3 cut(s)	385, 551, 787
BspPI	GGATC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	739
BssMI	GATC	9 cut(s)	229, 234, 278, 282, 337, 445, 726, 754, 964
BssSI	CACGAG	1 cut(s)	1016
Bst2BI	CACGAG	1 cut(s)	1016
Bst4CI	ACNGT	4 cut(s)	397, 484, 526, 532
Bst6I	CTCTTC	2 cut(s)	28, 803
BstC8I	GCNNGC	2 cut(s)	576, 995
BstDEI	CTNAG	1 cut(s)	774
BstENI	CCTNNNNNAGG	1 cut(s)	659
BstF5I	GGATG	4 cut(s)	389, 625, 680, 942
BstHHI	GCGC	1 cut(s)	993
BstKTI	GATC	9 cut(s)	232, 237, 281, 285, 340, 448, 729, 757, 967
BstMAI	GTCTC	2 cut(s)	805, 1063
BstMBI	GATC	9 cut(s)	229, 234, 278, 282, 337, 445, 726, 754, 964
BstMWI	GCNNNNNNNGC	3 cut(s)	549, 908, 967
BstNSI	RCATGY	3 cut(s)	574, 991, 1015
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	3 cut(s)	381, 547, 783
BstSLI	GKGCMC	2 cut(s)	580, 931
BstV1I	GCAGC	7 cut(s)	235, 367, 395, 519, 561, 898, 901
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
Bsu15I	ATCGAT	2 cut(s)	281, 725
BsuRI	GGCC	4 cut(s)	543, 902, 929, 954
BsuTUI	ATCGAT	2 cut(s)	281, 725
BtsCI	GGATG	4 cut(s)	389, 625, 680, 942
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	3 cut(s)	270, 393, 544
Cac8I	GCNNGC	2 cut(s)	576, 995
CfoI	GCGC	1 cut(s)	993
Cfr13I	GGNCC	4 cut(s)	125, 412, 927, 928
ClaI	ATCGAT	2 cut(s)	281, 725
Csp6I	GTAC	2 cut(s)	1038, 1066
CviAII	CATG	4 cut(s)	571, 730, 988, 1012
CviQI	GTAC	2 cut(s)	1038, 1066
DdeI	CTNAG	1 cut(s)	774
DpnI	GATC	9 cut(s)	231, 236, 280, 284, 339, 447, 728, 756, 966
DpnII	GATC	9 cut(s)	229, 234, 278, 282, 337, 445, 726, 754, 964
DraI	TTTAAA	2 cut(s)	7, 55
EaeI	YGGCCR	1 cut(s)	541
Eam1104I	CTCTTC	2 cut(s)	28, 803
EarI	CTCTTC	2 cut(s)	28, 803
Eco147I	AGGCCT	1 cut(s)	902
Eco24I	GRGCYC	1 cut(s)	931
Eco47I	GGWCC	2 cut(s)	125, 412
Eco57I	CTGAAG	3 cut(s)	360, 641, 746
EcoNI	CCTNNNNNAGG	1 cut(s)	659
EcoT38I	GRGCYC	1 cut(s)	931
FaeI	CATG	4 cut(s)	574, 733, 991, 1015
FalI	AAGNNNNNCTT	2 cut(s)	358, 390
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	4 cut(s)	570, 729, 987, 1011
FbaI	TGATCA	2 cut(s)	754, 964
FblI	GTMKAC	1 cut(s)	248
Fnu4HI	GCNGC	7 cut(s)	224, 381, 384, 508, 550, 912, 915
FokI	GGATG	4 cut(s)	376, 612, 667, 929
FriOI	GRGCYC	1 cut(s)	931
Fsp4HI	GCNGC	7 cut(s)	224, 381, 384, 508, 550, 912, 915
GlaI	GCGC	1 cut(s)	992
GluI	GCNGC	7 cut(s)	224, 381, 384, 508, 550, 912, 915
HaeIII	GGCC	4 cut(s)	543, 902, 929, 954
HapII	CCGG	3 cut(s)	123, 593, 803
HhaI	GCGC	1 cut(s)	993
Hin1II	CATG	4 cut(s)	574, 733, 991, 1015
Hin6I	GCGC	1 cut(s)	991
HinP1I	GCGC	1 cut(s)	991
HincII	GTYRAC	2 cut(s)	568, 793
HindII	GTYRAC	2 cut(s)	568, 793
HinfI	GANTC	4 cut(s)	13, 18, 697, 722
HpaII	CCGG	3 cut(s)	123, 593, 803
HphI	GGTGA	4 cut(s)	301, 318, 608, 692
Hpy166II	GTNNAC	3 cut(s)	249, 568, 793
Hpy188I	TCNGA	4 cut(s)	234, 337, 671, 740
Hpy188III	TCNNGA	6 cut(s)	520, 659, 764, 803, 881, 1018
Hpy8I	GTNNAC	3 cut(s)	249, 568, 793
HpyAV	CCTTC	5 cut(s)	590, 629, 665, 740, 995
HpyCH4III	ACNGT	4 cut(s)	397, 484, 526, 532
HpyCH4IV	ACGT	1 cut(s)	862
HpyCH4V	TGCA	6 cut(s)	383, 468, 507, 549, 785, 917
HpyF10VI	GCNNNNNNNGC	3 cut(s)	549, 908, 967
HpyF3I	CTNAG	1 cut(s)	774
HpySE526I	ACGT	1 cut(s)	862
Hsp92II	CATG	4 cut(s)	574, 733, 991, 1015
HspAI	GCGC	1 cut(s)	991
Kpn2I	TCCGGA	1 cut(s)	802
Ksp22I	TGATCA	2 cut(s)	754, 964
Kzo9I	GATC	9 cut(s)	229, 234, 278, 282, 337, 445, 726, 754, 964
Lsp1109I	GCAGC	7 cut(s)	235, 367, 395, 519, 561, 898, 901
LweI	GCATC	1 cut(s)	395
MaeII	ACGT	1 cut(s)	862
MaeIII	GTNAC	5 cut(s)	110, 197, 476, 526, 710
MalI	GATC	9 cut(s)	231, 236, 280, 284, 339, 447, 728, 756, 966
MboI	GATC	9 cut(s)	229, 234, 278, 282, 337, 445, 726, 754, 964
MboII	GAAGA	9 cut(s)	15, 172, 366, 575, 578, 625, 752, 820, 988
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	2 cut(s)	580, 931
MlsI	TGGCCA	1 cut(s)	543
MluCI	AATT	6 cut(s)	34, 50, 144, 213, 351, 922
MluNI	TGGCCA	1 cut(s)	543
MmeI	TCCRAC	1 cut(s)	708
Mox20I	TGGCCA	1 cut(s)	543
MroI	TCCGGA	1 cut(s)	802
MroXI	GAANNNNTTC	1 cut(s)	373
MscI	TGGCCA	1 cut(s)	543
MseI	TTAA	6 cut(s)	6, 38, 54, 192, 402, 867
MslI	CAYNNNNRTG	2 cut(s)	692, 1016
Msp20I	TGGCCA	1 cut(s)	543
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	3 cut(s)	123, 593, 803
MspR9I	CCNGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	3 cut(s)	549, 908, 967
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	9 cut(s)	229, 234, 278, 282, 337, 445, 726, 754, 964
NlaIII	CATG	4 cut(s)	574, 733, 991, 1015
NlaIV	GGNNCC	2 cut(s)	127, 929
NmuCI	GTSAC	2 cut(s)	476, 526
NspI	RCATGY	3 cut(s)	574, 991, 1015
PceI	AGGCCT	1 cut(s)	902
PdmI	GAANNNNTTC	1 cut(s)	373
PfeI	GAWTC	4 cut(s)	13, 18, 697, 722
PflFI	GACNNNGTC	1 cut(s)	482
PkrI	GCNGC	7 cut(s)	225, 382, 385, 509, 551, 913, 916
PspN4I	GGNNCC	2 cut(s)	127, 929
PspOMI	GGGCCC	1 cut(s)	927
PspPI	GGNCC	4 cut(s)	125, 412, 927, 928
PstI	CTGCAG	3 cut(s)	385, 551, 787
PsuI	RGATCY	1 cut(s)	234
PsyI	GACNNNGTC	1 cut(s)	482
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	2 cut(s)	1039, 1067
RsaNI	GTAC	2 cut(s)	1038, 1066
RseI	CAYNNNNRTG	2 cut(s)	692, 1016
SaqAI	TTAA	6 cut(s)	6, 38, 54, 192, 402, 867
SatI	GCNGC	7 cut(s)	224, 381, 384, 508, 550, 912, 915
Sau3AI	GATC	9 cut(s)	229, 234, 278, 282, 337, 445, 726, 754, 964
Sau96I	GGNCC	4 cut(s)	125, 412, 927, 928
ScaI	AGTACT	1 cut(s)	1039
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	2 cut(s)	580, 931
SetI	ASST	9 cut(s)	382, 432, 453, 558, 621, 775, 802, 865, 874
SfaNI	GCATC	1 cut(s)	395
SfcI	CTRYAG	3 cut(s)	381, 547, 783
SinI	GGWCC	2 cut(s)	125, 412
SmiMI	CAYNNNNRTG	2 cut(s)	692, 1016
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	6 cut(s)	34, 50, 144, 213, 351, 922
SseBI	AGGCCT	1 cut(s)	902
SsiI	CCGC	1 cut(s)	838
SspI	AATATT	1 cut(s)	75
StuI	AGGCCT	1 cut(s)	902
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	4 cut(s)	397, 484, 526, 532
TaiI	ACGT	1 cut(s)	865
TaqI	TCGA	4 cut(s)	16, 281, 535, 725
TasI	AATT	6 cut(s)	34, 50, 144, 213, 351, 922
TatI	WGTACW	1 cut(s)	1037
TfiI	GAWTC	4 cut(s)	13, 18, 697, 722
Tru1I	TTAA	6 cut(s)	6, 38, 54, 192, 402, 867
Tru9I	TTAA	6 cut(s)	6, 38, 54, 192, 402, 867
TscAI	CASTG	3 cut(s)	277, 400, 551
TseFI	GTSAC	2 cut(s)	476, 526
TseI	GCWGC	7 cut(s)	223, 380, 383, 507, 549, 911, 914
Tsp45I	GTSAC	2 cut(s)	476, 526
TspDTI	ATGAA	2 cut(s)	710, 735
TspGWI	ACGGA	1 cut(s)	553
TspRI	CASTG	3 cut(s)	277, 400, 551
Tth111I	GACNNNGTC	1 cut(s)	482
VpaK11BI	GGWCC	2 cut(s)	125, 412
XagI	CCTNNNNNAGG	1 cut(s)	659
XapI	RAATTY	2 cut(s)	34, 50
XceI	RCATGY	3 cut(s)	574, 991, 1015
XmiI	GTMKAC	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	373
ZrmI	AGTACT	1 cut(s)	1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.