Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002502

Physical Location & Seq

Genomic Coordinates Forward (+)

13974935 .. 13978149

Gene Structure 3215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1065700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTCATCCTCTTCTGCTTCAACCTTGTCCCTCGACCACCTCCCTCCTTCCGAGCAGCTCTGTTATGTCCATTGCAACATTTGTGACACTGTCCTTGCGGTGAGTGTCCCTTGCACAAGTTTGTTCAAGACTGTGACGGTGCGATGTGGGCACTGCACCAATCTGCTTCCAGTGAACATGCGTGGGCTGCTTTTGCCTTCCCCAAATCAGTTTCATCATCTTGGTCACTCTTTTTTCTCTTCCCCTAGTAATTCCCACAATCTTCTGGAAGAGATTCCAAATGTTCCGACCCCAAATTTTCTGATGAACCAAACAAGTGTGAACGACTTTGCTGCAAGACCAAGAGGTGGACCTGATGAACTTCTTCCAAGGCCTCCAGTCATCAACAGACCCCCGGAGAAGAGACAGAGAGTCCCCTCTGCATACAACCGTTTTATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCTGATATATCCCATAGAGAAGCCTTCAGTGCAGCTGCTAAGAATTGGGCTCACTTTCCACACATTCACTTTGGTCTCATGCCTGACCAGACTGTGAAGAAGACAACCGTTCGCCAGCAGGAAGGAGAGGATGTTGTGATGAAAGATGGGTTTTTCTCTTCAGCTAATAATGTGCGCGTCTTACCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

221

Amino Acids

24.59

Weight (kDa)

8.58

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	16 - 69	4.5e-28	YABBY, N-terminal
YABBY	PF04690	120 - 182	4.4e-37	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45190 AT2G45190
fragaria_vesca	FvH4_5g00320 FvH4_5g00320 FvH4_7g11260 FvH4_7g11260 FvH4_7g11260
malus_domestica	MD04G1083800.v1.1 MD06G1065700.v1.1 MD07G1117200.v1.1
prunus_persica	Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.5G075800_v2.0.a1
pyrus_communis	pycom02g17050 pycom04g07490 pycom07g10750
rosa_chinensis	RchiOBHm_Chr1g0349391 RchiOBHm_Chr7g0202251
rosa_laevigata	RLG00000003614 RLG00000028552
rosa_multiflora	Rmu_sc0001394.1_g000004 Rmu_sc0004208.1_g000005 Rmu_sc0018468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00254710 Rroxscaffold_4G00305570
rosa_rugosa	Rorug01G0203200 Rorug01G0203300 Rorug07G0069300 Rorug07G0069400
rosa_samantha	Rh1AG220600 Rh1BG186800 Rh1CG205700 Rh1DG216200 Rh7AG196600 Rh7BG197800 Rh7CG207700 Rh7DG203200
rosa_wichuraiana	Rw1G018760 Rw7G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	347
AccII	CGCG	1 cut(s)	648
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	1 cut(s)	442
AcsI	RAATTY	1 cut(s)	295
AcuI	CTGAAG	2 cut(s)	481, 615
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	2 cut(s)	21, 127
AhdI	GACNNNNNGTC	1 cut(s)	410
AluBI	AGCT	3 cut(s)	58, 506, 635
AluI	AGCT	3 cut(s)	58, 506, 635
Alw26I	GTCTC	2 cut(s)	397, 551
AlwI	GGATC	1 cut(s)	442
AoxI	GGCC	1 cut(s)	371
ApeKI	GCWGC	5 cut(s)	55, 187, 332, 503, 506
ApoI	RAATTY	1 cut(s)	295
Asp700I	GAANNNNTTC	2 cut(s)	273, 363
AspLEI	GCGC	1 cut(s)	648
AspS9I	GGNCC	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	153
BanII	GRGCYC	1 cut(s)	523
BbsI	GAAGAC	1 cut(s)	578
BbvI	GCAGC	5 cut(s)	67, 174, 319, 493, 515
BccI	CCATC	1 cut(s)	611
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	2 cut(s)	397, 551
BfaI	CTAG	1 cut(s)	246
BisI	GCNGC	5 cut(s)	56, 188, 333, 504, 507
BlsI	GCNGC	5 cut(s)	57, 189, 334, 505, 508
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	350
BmeRI	GACNNNNNGTC	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	350
BmrFI	CCNGG	1 cut(s)	395
BmsI	GCATC	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	578
BpmI	CTGGAG	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	2 cut(s)	368, 393
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse1I	ACTGG	2 cut(s)	170, 377
Bse3DI	GCAATG	1 cut(s)	70
BseDI	CCNNGG	2 cut(s)	368, 393
BseGI	GGATG	2 cut(s)	5, 607
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMI	GCAATG	1 cut(s)	70
BseNI	ACTGG	2 cut(s)	170, 377
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	5 cut(s)	67, 174, 319, 493, 515
BsgI	GTGCAG	2 cut(s)	139, 522
Bsh1236I	CGCG	1 cut(s)	648
BshFI	GGCC	1 cut(s)	373
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	3 cut(s)	13, 92, 398
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	2 cut(s)	397, 551
BsmFI	GGGAC	3 cut(s)	13, 92, 398
BsnI	GGCC	1 cut(s)	373
Bso31I	GGTCTC	1 cut(s)	551
Bsp1286I	GDGCHC	2 cut(s)	153, 523
Bsp143I	GATC	1 cut(s)	447
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	1 cut(s)	373
BspFNI	CGCG	1 cut(s)	648
BspPI	GGATC	1 cut(s)	442
BspTNI	GGTCTC	1 cut(s)	551
BsrDI	GCAATG	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	170, 377
BssECI	CCNNGG	2 cut(s)	368, 393
BssMI	GATC	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	368
Bst4CI	ACNGT	6 cut(s)	91, 133, 139, 431, 565, 580
Bst6I	CTCTTC	5 cut(s)	16, 244, 264, 395, 634
BstC8I	GCNNGC	1 cut(s)	587
BstDEI	CTNAG	1 cut(s)	510
BstF5I	GGATG	2 cut(s)	5, 607
BstFNI	CGCG	1 cut(s)	648
BstHHI	GCGC	1 cut(s)	648
BstKTI	GATC	1 cut(s)	450
BstMAI	GTCTC	2 cut(s)	397, 551
BstMBI	GATC	1 cut(s)	447
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 187, 193, 500
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	393
BstSLI	GKGCMC	1 cut(s)	153
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	5 cut(s)	67, 174, 319, 493, 515
BstV2I	GAAGAC	1 cut(s)	578
BstX2I	RGATCY	1 cut(s)	447
BstYI	RGATCY	1 cut(s)	447
BsuRI	GGCC	1 cut(s)	373
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	5, 607
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	4 cut(s)	87, 151, 177, 505
Cac8I	GCNNGC	1 cut(s)	587
CfoI	GCGC	1 cut(s)	648
Cfr13I	GGNCC	1 cut(s)	350
CseI	GACGC	1 cut(s)	637
CviAII	CATG	2 cut(s)	178, 550
CviJI	RGCY	7 cut(s)	58, 187, 373, 494, 506, 521, 635
CviKI_1	RGCY	7 cut(s)	58, 187, 373, 494, 506, 521, 635
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	1 cut(s)	449
DpnII	GATC	1 cut(s)	447
DriI	GACNNNNNGTC	1 cut(s)	410
Eam1104I	CTCTTC	5 cut(s)	16, 244, 264, 395, 634
Eam1105I	GACNNNNNGTC	1 cut(s)	410
EarI	CTCTTC	5 cut(s)	16, 244, 264, 395, 634
Eco130I	CCWWGG	1 cut(s)	368
Eco147I	AGGCCT	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	523
Eco31I	GGTCTC	1 cut(s)	551
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	2 cut(s)	481, 615
EcoT14I	CCWWGG	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	2 cut(s)	181, 553
FaiI	YATR	6 cut(s)	66, 179, 424, 479, 486, 551
FaqI	GGGAC	3 cut(s)	13, 92, 398
FatI	CATG	2 cut(s)	177, 549
Fnu4HI	GCNGC	5 cut(s)	56, 188, 333, 504, 507
FokI	GGATG	1 cut(s)	614
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	5 cut(s)	56, 188, 333, 504, 507
FspBI	CTAG	1 cut(s)	246
GlaI	GCGC	1 cut(s)	647
GluI	GCNGC	5 cut(s)	56, 188, 333, 504, 507
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	373
HapII	CCGG	1 cut(s)	395
HgaI	GACGC	1 cut(s)	637
HhaI	GCGC	1 cut(s)	648
Hin1II	CATG	2 cut(s)	181, 553
Hin6I	GCGC	1 cut(s)	646
HinP1I	GCGC	1 cut(s)	646
HinfI	GANTC	3 cut(s)	274, 411, 469
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	3 cut(s)	175, 322, 350
Hpy188I	TCNGA	3 cut(s)	52, 288, 303
Hpy188III	TCNNGA	3 cut(s)	127, 266, 473
Hpy8I	GTNNAC	3 cut(s)	175, 322, 350
HpyAV	CCTTC	4 cut(s)	57, 207, 505, 587
HpyCH4III	ACNGT	6 cut(s)	91, 133, 139, 431, 565, 580
HpyCH4V	TGCA	6 cut(s)	75, 114, 156, 335, 422, 503
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 187, 193, 500
HpyF3I	CTNAG	1 cut(s)	510
Hsp92II	CATG	2 cut(s)	181, 553
HspAI	GCGC	1 cut(s)	646
Kzo9I	GATC	1 cut(s)	447
Lsp1109I	GCAGC	5 cut(s)	67, 174, 319, 493, 515
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	1 cut(s)	246
MaeIII	GTNAC	3 cut(s)	83, 133, 224
MalI	GATC	1 cut(s)	449
MboI	GATC	1 cut(s)	447
MboII	GAAGA	9 cut(s)	3, 231, 254, 281, 356, 412, 580, 583, 621
MflI	RGATCY	1 cut(s)	447
MhlI	GDGCHC	2 cut(s)	153, 523
MluCI	AATT	3 cut(s)	250, 295, 514
MlyI	GAGTC	1 cut(s)	420
MmeI	TCCRAC	2 cut(s)	311, 475
MnlI	CCTC	8 cut(s)	19, 41, 50, 54, 338, 384, 427, 592
MroXI	GAANNNNTTC	2 cut(s)	273, 363
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	395
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	4 cut(s)	148, 187, 193, 500
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	1 cut(s)	447
NlaIII	CATG	2 cut(s)	181, 553
NmuCI	GTSAC	3 cut(s)	83, 133, 224
NspI	RCATGY	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	373
PdmI	GAANNNNTTC	2 cut(s)	273, 363
PfeI	GAWTC	2 cut(s)	274, 469
PflFI	GACNNNGTC	1 cut(s)	89
PflMI	CCANNNNNTGG	1 cut(s)	347
PkrI	GCNGC	5 cut(s)	57, 189, 334, 505, 508
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PspPI	GGNCC	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	447
PsyI	GACNNNGTC	1 cut(s)	89
PvuII	CAGCTG	1 cut(s)	506
SatI	GCNGC	5 cut(s)	56, 188, 333, 504, 507
Sau3AI	GATC	1 cut(s)	447
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	1 cut(s)	420
ScrFI	CCNGG	1 cut(s)	395
SduI	GDGCHC	2 cut(s)	153, 523
SetI	ASST	8 cut(s)	26, 42, 60, 349, 355, 508, 637, 658
SfaNI	GCATC	1 cut(s)	465
SinI	GGWCC	1 cut(s)	350
Sse9I	AATT	3 cut(s)	250, 295, 514
SseBI	AGGCCT	1 cut(s)	373
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	1 cut(s)	246
StuI	AGGCCT	1 cut(s)	373
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	6 cut(s)	91, 133, 139, 431, 565, 580
TaqI	TCGA	1 cut(s)	33
TasI	AATT	3 cut(s)	250, 295, 514
TfiI	GAWTC	2 cut(s)	274, 469
TscAI	CASTG	4 cut(s)	94, 158, 177, 505
TseFI	GTSAC	3 cut(s)	83, 133, 224
TseI	GCWGC	5 cut(s)	55, 187, 332, 503, 506
Tsp45I	GTSAC	3 cut(s)	83, 133, 224
TspDTI	ATGAA	4 cut(s)	203, 320, 372, 626
TspRI	CASTG	4 cut(s)	94, 158, 177, 505
Tth111I	GACNNNGTC	1 cut(s)	89
Van91I	CCANNNNNTGG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	1 cut(s)	295
XceI	RCATGY	1 cut(s)	181
XmnI	GAANNNNTTC	2 cut(s)	273, 363
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.