Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002502

Physical Location & Seq

Genomic Coordinates Forward (+)

12064184 .. 12067335

Gene Structure 3152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1083800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTCATCCTCTTCAACCTTGTCCCTCGACCACCTCCCTCCTTCCGAGCAGCTCTGTTATGTCCATTGCAACATTTGCGACACTGGCCTTGCGGTGAGTGTTCCTTGCACAAGTTTGTTCAAGACTGTAACGGTGCGATGTGGGCACTGCACCAATCTGCTGACAGTGAACATGCGTGGGCAGCTTCTGCCTTCCTCAAATCAGTTTCATCATCTTGGTCACTCTTTTTTTTCTTCCCCTAACAATTCCCTTAATCTTCTGGAAGAGATTCCAAATGTTCCGACCCCAAATTTTCTTGTTAACCACACAAATGTGAATGACTTTGCGGGAACACCAAGAGGTGGAGCTGATGAACATTTTCCAAGGCCCCCAGTCATTAACAGACCCCCAGAGAAGAGACAGAGAGTCCCCTCTGCATACAACCGTTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCTGATATATCACATAGAGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCTCACTTTCCACACATTCACTTTGGTCTTATGCCTGACCAGACTGTGAAGAAGACAACCATTCGCCAGCAGGAAGGAGAGGATGTTCTGATGAAAGATGGGTTTCTCTCTTCAGCTAATAATGTGCGTGTCTCCCCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

219

Amino Acids

24.34

Weight (kDa)

8.26

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	14 - 68	1.3e-26	YABBY, N-terminal
YABBY	PF04690	119 - 180	1.3e-36	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45190 AT2G45190
fragaria_vesca	FvH4_5g00320 FvH4_5g00320 FvH4_7g11260 FvH4_7g11260 FvH4_7g11260
malus_domestica	MD04G1083800.v1.1 MD06G1065700.v1.1 MD07G1117200.v1.1
prunus_persica	Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.5G075800_v2.0.a1
pyrus_communis	pycom02g17050 pycom04g07490 pycom07g10750
rosa_chinensis	RchiOBHm_Chr1g0349391 RchiOBHm_Chr7g0202251
rosa_laevigata	RLG00000003614 RLG00000028552
rosa_multiflora	Rmu_sc0001394.1_g000004 Rmu_sc0004208.1_g000005 Rmu_sc0018468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00254710 Rroxscaffold_4G00305570
rosa_rugosa	Rorug01G0203200 Rorug01G0203300 Rorug07G0069300 Rorug07G0069400
rosa_samantha	Rh1AG220600 Rh1BG186800 Rh1CG205700 Rh1DG216200 Rh7AG196600 Rh7BG197800 Rh7CG207700 Rh7DG203200
rosa_wichuraiana	Rw1G018760 Rw7G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	341, 510
AciI	CCGC	2 cut(s)	92, 326
AclWI	GGATC	1 cut(s)	436
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	2 cut(s)	475, 609
AfiI	CCNNNNNNNGG	2 cut(s)	341, 510
AgsI	TTSAA	2 cut(s)	15, 121
AhdI	GACNNNNNGTC	1 cut(s)	404
AleI	CACNNNNGTG	1 cut(s)	311
AloI	GAACNNNNNNTCC	2 cut(s)	582, 614
AluBI	AGCT	5 cut(s)	52, 184, 347, 500, 629
AluI	AGCT	5 cut(s)	52, 184, 347, 500, 629
Alw26I	GTCTC	2 cut(s)	391, 649
AlwI	GGATC	1 cut(s)	436
AlwNI	CAGNNNCTG	1 cut(s)	187
AoxI	GGCC	2 cut(s)	85, 365
ApeKI	GCWGC	4 cut(s)	49, 181, 497, 500
ApoI	RAATTY	1 cut(s)	289
Asp700I	GAANNNNTTC	2 cut(s)	267, 357
AspS9I	GGNCC	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	517
BbsI	GAAGAC	1 cut(s)	572
BbvI	GCAGC	4 cut(s)	61, 193, 487, 509
BccI	CCATC	1 cut(s)	605
BcoDI	GTCTC	2 cut(s)	391, 649
BisI	GCNGC	4 cut(s)	50, 182, 498, 501
BlsI	GCNGC	4 cut(s)	51, 183, 499, 502
BmeRI	GACNNNNNGTC	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	366
BmiI	GGNNCC	1 cut(s)	368
BmrI	ACTGGG	1 cut(s)	365
BmsI	GCATC	1 cut(s)	459
BmuI	ACTGGG	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	362
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 510
Bse1I	ACTGG	2 cut(s)	88, 371
Bse3DI	GCAATG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	2 cut(s)	5, 601
BseLI	CCNNNNNNNGG	2 cut(s)	341, 510
BseMI	GCAATG	1 cut(s)	64
BseNI	ACTGG	2 cut(s)	88, 371
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	4 cut(s)	61, 193, 487, 509
BsgI	GTGCAG	2 cut(s)	133, 516
BshFI	GGCC	2 cut(s)	87, 367
BslFI	GGGAC	2 cut(s)	7, 392
BslI	CCNNNNNNNGG	2 cut(s)	341, 510
BsmAI	GTCTC	2 cut(s)	391, 649
BsmFI	GGGAC	2 cut(s)	7, 392
BsnI	GGCC	2 cut(s)	87, 367
Bsp1286I	GDGCHC	2 cut(s)	147, 517
Bsp143I	GATC	1 cut(s)	441
BspACI	CCGC	2 cut(s)	92, 326
BspANI	GGCC	2 cut(s)	87, 367
BspLI	GGNNCC	1 cut(s)	368
BspPI	GGATC	1 cut(s)	436
BsrDI	GCAATG	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	88, 371
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	362
Bst4CI	ACNGT	5 cut(s)	127, 133, 166, 425, 559
Bst6I	CTCTTC	4 cut(s)	16, 258, 389, 628
BstAPI	GCANNNNNTGC	2 cut(s)	75, 187
BstC8I	GCNNGC	1 cut(s)	581
BstF5I	GGATG	2 cut(s)	5, 601
BstKTI	GATC	1 cut(s)	444
BstMAI	GTCTC	2 cut(s)	391, 649
BstMBI	GATC	1 cut(s)	441
BstMWI	GCNNNNNNNGC	6 cut(s)	75, 84, 142, 181, 187, 494
BstNSI	RCATGY	1 cut(s)	175
BstSLI	GKGCMC	1 cut(s)	147
BstV1I	GCAGC	4 cut(s)	61, 193, 487, 509
BstV2I	GAAGAC	1 cut(s)	572
BstX2I	RGATCY	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	87, 367
BtgZI	GCGATG	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	5, 601
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	4 cut(s)	81, 145, 171, 499
Cac8I	GCNNGC	1 cut(s)	581
CaiI	CAGNNNCTG	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	366
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	9 cut(s)	52, 87, 184, 347, 367, 488, 500, 515, 629
CviKI_1	RGCY	9 cut(s)	52, 87, 184, 347, 367, 488, 500, 515, 629
DpnI	GATC	1 cut(s)	443
DpnII	GATC	1 cut(s)	441
DriI	GACNNNNNGTC	1 cut(s)	404
Eam1104I	CTCTTC	4 cut(s)	16, 258, 389, 628
Eam1105I	GACNNNNNGTC	1 cut(s)	404
EarI	CTCTTC	4 cut(s)	16, 258, 389, 628
Eco130I	CCWWGG	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	517
Eco57I	CTGAAG	2 cut(s)	475, 609
EcoO109I	RGGNCCY	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	362
EcoT38I	GRGCYC	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	1 cut(s)	175
FaiI	YATR	6 cut(s)	60, 173, 418, 473, 480, 545
FaqI	GGGAC	2 cut(s)	7, 392
FatI	CATG	1 cut(s)	171
FauI	CCCGC	1 cut(s)	319
Fnu4HI	GCNGC	4 cut(s)	50, 182, 498, 501
FokI	GGATG	1 cut(s)	608
FriOI	GRGCYC	1 cut(s)	517
Fsp4HI	GCNGC	4 cut(s)	50, 182, 498, 501
GluI	GCNGC	4 cut(s)	50, 182, 498, 501
HaeIII	GGCC	2 cut(s)	87, 367
Hin1II	CATG	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	3 cut(s)	268, 405, 463
HpaI	GTTAAC	1 cut(s)	301
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	169, 301
Hpy188I	TCNGA	3 cut(s)	46, 282, 603
Hpy188III	TCNNGA	3 cut(s)	121, 260, 467
Hpy8I	GTNNAC	2 cut(s)	169, 301
HpyAV	CCTTC	4 cut(s)	51, 201, 499, 581
HpyCH4III	ACNGT	5 cut(s)	127, 133, 166, 425, 559
HpyCH4V	TGCA	5 cut(s)	69, 108, 150, 416, 497
HpyF10VI	GCNNNNNNNGC	6 cut(s)	75, 84, 142, 181, 187, 494
Hsp92II	CATG	1 cut(s)	175
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	441
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	9 cut(s)	69, 245, 384, 402, 480, 561, 566, 569, 593
Lsp1109I	GCAGC	4 cut(s)	61, 193, 487, 509
LweI	GCATC	1 cut(s)	459
MaeIII	GTNAC	2 cut(s)	127, 218
MalI	GATC	1 cut(s)	443
MboI	GATC	1 cut(s)	441
MboII	GAAGA	8 cut(s)	3, 225, 248, 275, 406, 574, 577, 615
MflI	RGATCY	1 cut(s)	441
MhlI	GDGCHC	2 cut(s)	147, 517
MluCI	AATT	3 cut(s)	244, 289, 508
MlyI	GAGTC	1 cut(s)	414
MmeI	TCCRAC	2 cut(s)	305, 469
MnlI	CCTC	8 cut(s)	19, 35, 44, 48, 205, 332, 421, 586
MroXI	GAANNNNTTC	2 cut(s)	267, 357
MseI	TTAA	3 cut(s)	252, 300, 378
MslI	CAYNNNNRTG	2 cut(s)	309, 311
MspA1I	CMGCKG	1 cut(s)	500
MwoI	GCNNNNNNNGC	6 cut(s)	75, 84, 142, 181, 187, 494
NdeII	GATC	1 cut(s)	441
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	1 cut(s)	368
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	1 cut(s)	175
OliI	CACNNNNGTG	1 cut(s)	311
PdmI	GAANNNNTTC	2 cut(s)	267, 357
PfeI	GAWTC	2 cut(s)	268, 463
PflMI	CCANNNNNTGG	2 cut(s)	341, 510
PkrI	GCNGC	4 cut(s)	51, 183, 499, 502
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	368
PspPI	GGNCC	1 cut(s)	366
PstNI	CAGNNNCTG	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	441
PvuII	CAGCTG	1 cut(s)	500
RseI	CAYNNNNRTG	2 cut(s)	309, 311
SaqAI	TTAA	3 cut(s)	252, 300, 378
SatI	GCNGC	4 cut(s)	50, 182, 498, 501
Sau3AI	GATC	1 cut(s)	441
Sau96I	GGNCC	1 cut(s)	366
SchI	GAGTC	1 cut(s)	414
SduI	GDGCHC	2 cut(s)	147, 517
SetI	ASST	8 cut(s)	20, 36, 54, 186, 343, 349, 502, 631
SfaNI	GCATC	1 cut(s)	459
SmiMI	CAYNNNNRTG	2 cut(s)	309, 311
Sse9I	AATT	3 cut(s)	244, 289, 508
SsiI	CCGC	2 cut(s)	92, 326
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	5 cut(s)	127, 133, 166, 425, 559
TaqI	TCGA	1 cut(s)	27
TasI	AATT	3 cut(s)	244, 289, 508
TfiI	GAWTC	2 cut(s)	268, 463
Tru1I	TTAA	3 cut(s)	252, 300, 378
Tru9I	TTAA	3 cut(s)	252, 300, 378
TscAI	CASTG	4 cut(s)	88, 152, 171, 499
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	4 cut(s)	49, 181, 497, 500
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	4 cut(s)	197, 366, 418, 620
TspRI	CASTG	4 cut(s)	88, 152, 171, 499
Van91I	CCANNNNNTGG	2 cut(s)	341, 510
XapI	RAATTY	1 cut(s)	289
XceI	RCATGY	1 cut(s)	175
XmnI	GAANNNNTTC	2 cut(s)	267, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.