Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002502

Physical Location & Seq

Genomic Coordinates Forward (+)

26235666 .. 26238501

Gene Structure 2836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00305570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTCTGCTGCTGCCTCTTCCAACACTGTCTTTTCATCACCGGACCACCTCTCCCCCTCCGATCAGCTCTGCTATGTTCACTGCAACTTTTGTGATACTGTTCTCGCGGTAAGCGTTCCTTGCAGCAGTTTGTTCAAGACAGTGACGGTCCGATGCGGCCATTGCAGCAACCTGCTCTCCGTCAACATGCGCGGCCTTCTTCTCCCTGCTGCAGCTAACCAACTTCACCTCGGACATTCTTTCTTCACTCCTCAGAATCTCCTGCAGGAGGAGATCCGAAACGCCCCATCAAACACGTTCTCAAATCAGCCTAACATGATGATGAACGAATCATTTATGCCGATGATTCGAGGAGTTGAGGAGATACCTAAGCCTCCACCTGTTGTTAACAGACCTCCGGAGAAGAGACAGAGAGTGCCATCTGCCTACAACCGCTTCATCAAGGAAGAGATACAACGTATCAAAGCTGGAAACCCTGATATTAGCCACAGAGAGGCCTTCAGTGCTGCTGCCAAGAATTGGGCCCACTTCCCTCACATCCACTTTGGCCTGATGCCTGATCAACCCGTGAAGAAAGCCAATATTCGCCAGGATGGAGAGGACATGCTCATCAAAGACAATGGATTTTTCAGCGCTCCTGCAAATTTGGGTGTCTCCCCCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009909 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010093 GO:0010154 GO:0010158 GO:0010229 GO:0010450 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0090706 GO:0099402 GO:0140110 GO:1902183 GO:1903506 GO:1905392 GO:1905393 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

221

Amino Acids

24.53

Weight (kDa)

8.24

Isoelectric Point (pI)

51.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	19 - 70	8.4e-30	YABBY, N-terminal
YABBY	PF04690	124 - 183	5.2e-38	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45190 AT2G45190
fragaria_vesca	FvH4_5g00320 FvH4_5g00320 FvH4_7g11260 FvH4_7g11260 FvH4_7g11260
malus_domestica	MD04G1083800.v1.1 MD06G1065700.v1.1 MD07G1117200.v1.1
prunus_persica	Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.2G140400_v2.0.a1 Prupe.5G075800_v2.0.a1
pyrus_communis	pycom02g17050 pycom04g07490 pycom07g10750
rosa_chinensis	RchiOBHm_Chr1g0349391 RchiOBHm_Chr7g0202251
rosa_laevigata	RLG00000003614 RLG00000028552
rosa_multiflora	Rmu_sc0001394.1_g000004 Rmu_sc0004208.1_g000005 Rmu_sc0018468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00254710 Rroxscaffold_4G00305570
rosa_rugosa	Rorug01G0203200 Rorug01G0203300 Rorug07G0069300 Rorug07G0069400
rosa_samantha	Rh1AG220600 Rh1BG186800 Rh1CG205700 Rh1DG216200 Rh7AG196600 Rh7BG197800 Rh7CG207700 Rh7DG203200
rosa_wichuraiana	Rw1G018760 Rw7G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	180
AccB7I	CCANNNNNTGG	1 cut(s)	519
AccII	CGCG	2 cut(s)	107, 192
AccIII	TCCGGA	1 cut(s)	397
AciI	CCGC	4 cut(s)	107, 156, 192, 433
AclWI	GGATC	1 cut(s)	268
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	643
AcuI	CTGAAG	1 cut(s)	484
AfeI	AGCGCT	1 cut(s)	634
AfiI	CCNNNNNNNGG	3 cut(s)	268, 493, 519
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	588
AluBI	AGCT	3 cut(s)	67, 215, 467
AluI	AGCT	3 cut(s)	67, 215, 467
Alw26I	GTCTC	2 cut(s)	400, 658
AlwI	GGATC	1 cut(s)	268
Aor13HI	TCCGGA	1 cut(s)	397
Aor51HI	AGCGCT	1 cut(s)	634
AoxI	GGCC	5 cut(s)	157, 193, 495, 522, 547
ApaI	GGGCCC	1 cut(s)	526
ApeKI	GCWGC	8 cut(s)	8, 11, 123, 165, 209, 212, 506, 509
ApoI	RAATTY	1 cut(s)	643
AspLEI	GCGC	2 cut(s)	192, 635
AspS9I	GGNCC	4 cut(s)	43, 148, 522, 523
AsuHPI	GGTGA	2 cut(s)	30, 218
AvaII	GGWCC	2 cut(s)	43, 148
BaeGI	GKGCMC	1 cut(s)	526
BanII	GRGCYC	1 cut(s)	526
BbvI	GCAGC	6 cut(s)	135, 177, 196, 224, 493, 496
BccI	CCATC	3 cut(s)	295, 427, 587
BciT130I	CCWGG	1 cut(s)	590
BclI	TGATCA	1 cut(s)	559
BcoDI	GTCTC	2 cut(s)	400, 658
BfmI	CTRYAG	2 cut(s)	210, 263
BfoI	RGCGCY	1 cut(s)	636
BfuAI	ACCTGC	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	590
Bme18I	GGWCC	2 cut(s)	43, 148
BmgT120I	GGNCC	4 cut(s)	43, 148, 522, 523
BmiI	GGNNCC	1 cut(s)	524
BmrFI	CCNGG	1 cut(s)	590
BmsI	GCATC	2 cut(s)	143, 543
Bpu10I	CCTNAGC	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	229
BsaWI	WCCGGW	2 cut(s)	40, 397
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 161, 191
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 493, 519
Bse3DI	GCAATG	1 cut(s)	160
BseAI	TCCGGA	1 cut(s)	397
BseBI	CCWGG	1 cut(s)	590
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	2 cut(s)	537, 598
BseLI	CCNNNNNNNGG	3 cut(s)	268, 493, 519
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	266
BseRI	GAGGAG	4 cut(s)	240, 284, 366, 374
BseSI	GKGCMC	1 cut(s)	526
BseXI	GCAGC	6 cut(s)	135, 177, 196, 224, 493, 496
Bsh1236I	CGCG	2 cut(s)	107, 192
BshFI	GGCC	5 cut(s)	159, 195, 497, 524, 549
BsiSI	CCGG	2 cut(s)	41, 398
BslI	CCNNNNNNNGG	3 cut(s)	268, 493, 519
BsmAI	GTCTC	2 cut(s)	400, 658
BsnI	GGCC	5 cut(s)	159, 195, 497, 524, 549
Bsp120I	GGGCCC	1 cut(s)	522
Bsp1286I	GDGCHC	1 cut(s)	526
Bsp13I	TCCGGA	1 cut(s)	397
Bsp143I	GATC	3 cut(s)	61, 273, 559
BspACI	CCGC	4 cut(s)	107, 156, 192, 433
BspANI	GGCC	5 cut(s)	159, 195, 497, 524, 549
BspCNI	CTCAG	1 cut(s)	265
BspEI	TCCGGA	1 cut(s)	397
BspFNI	CGCG	2 cut(s)	107, 192
BspLI	GGNNCC	1 cut(s)	524
BspMAI	CTGCAG	2 cut(s)	214, 267
BspMI	ACCTGC	1 cut(s)	180
BspPI	GGATC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	3 cut(s)	61, 273, 559
Bst2UI	CCWGG	1 cut(s)	590
Bst4CI	ACNGT	4 cut(s)	28, 100, 142, 148
Bst6I	CTCTTC	3 cut(s)	22, 398, 441
BstDEI	CTNAG	2 cut(s)	252, 369
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	537, 598
BstFNI	CGCG	2 cut(s)	107, 192
BstH2I	RGCGCY	1 cut(s)	636
BstHHI	GCGC	2 cut(s)	192, 635
BstKTI	GATC	3 cut(s)	64, 276, 562
BstMAI	GTCTC	2 cut(s)	400, 658
BstMBI	GATC	3 cut(s)	61, 273, 559
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 162, 165, 503
BstNI	CCWGG	1 cut(s)	590
BstNSI	RCATGY	2 cut(s)	190, 607
BstSCI	CCNGG	1 cut(s)	588
BstSFI	CTRYAG	2 cut(s)	210, 263
BstSLI	GKGCMC	1 cut(s)	526
BstUI	CGCG	2 cut(s)	107, 192
BstV1I	GCAGC	6 cut(s)	135, 177, 196, 224, 493, 496
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BsuRI	GGCC	5 cut(s)	159, 195, 497, 524, 549
BtsCI	GGATG	2 cut(s)	537, 598
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	4 cut(s)	24, 79, 147, 508
BveI	ACCTGC	1 cut(s)	180
CfoI	GCGC	2 cut(s)	192, 635
Cfr13I	GGNCC	4 cut(s)	43, 148, 522, 523
CpoI	CGGWCCG	1 cut(s)	148
CspI	CGGWCCG	1 cut(s)	148
CviAII	CATG	3 cut(s)	187, 316, 604
DdeI	CTNAG	2 cut(s)	252, 369
DpnI	GATC	3 cut(s)	63, 275, 561
DpnII	GATC	3 cut(s)	61, 273, 559
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	3 cut(s)	22, 398, 441
EarI	CTCTTC	3 cut(s)	22, 398, 441
Eco147I	AGGCCT	1 cut(s)	497
Eco24I	GRGCYC	1 cut(s)	526
Eco47I	GGWCC	2 cut(s)	43, 148
Eco47III	AGCGCT	1 cut(s)	634
Eco57I	CTGAAG	1 cut(s)	484
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	588
EcoT38I	GRGCYC	1 cut(s)	526
FaeI	CATG	3 cut(s)	190, 319, 607
FaiI	YATR	5 cut(s)	75, 188, 317, 338, 605
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FatI	CATG	3 cut(s)	186, 315, 603
FbaI	TGATCA	1 cut(s)	559
FokI	GGATG	2 cut(s)	524, 605
FriOI	GRGCYC	1 cut(s)	526
GlaI	GCGC	2 cut(s)	191, 634
HaeII	RGCGCY	1 cut(s)	636
HaeIII	GGCC	5 cut(s)	159, 195, 497, 524, 549
HapII	CCGG	2 cut(s)	41, 398
HhaI	GCGC	2 cut(s)	192, 635
Hin1II	CATG	3 cut(s)	190, 319, 607
Hin6I	GCGC	2 cut(s)	190, 633
HinP1I	GCGC	2 cut(s)	190, 633
HincII	GTYRAC	2 cut(s)	184, 388
HindII	GTYRAC	2 cut(s)	184, 388
HinfI	GANTC	3 cut(s)	256, 329, 346
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	2 cut(s)	41, 398
HphI	GGTGA	2 cut(s)	30, 218
Hpy166II	GTNNAC	3 cut(s)	79, 184, 388
Hpy188I	TCNGA	5 cut(s)	61, 152, 233, 255, 278
Hpy188III	TCNNGA	2 cut(s)	136, 398
Hpy8I	GTNNAC	3 cut(s)	79, 184, 388
HpyAV	CCTTC	2 cut(s)	206, 508
HpyCH4III	ACNGT	4 cut(s)	28, 100, 142, 148
HpyCH4IV	ACGT	2 cut(s)	296, 457
HpyCH4V	TGCA	6 cut(s)	84, 123, 165, 212, 265, 641
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 162, 165, 503
HpyF3I	CTNAG	2 cut(s)	252, 369
HpySE526I	ACGT	2 cut(s)	296, 457
Hsp92II	CATG	3 cut(s)	190, 319, 607
HspAI	GCGC	2 cut(s)	190, 633
Kpn2I	TCCGGA	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	559
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	61, 273, 559
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	6 cut(s)	135, 177, 196, 224, 493, 496
LweI	GCATC	2 cut(s)	143, 543
MaeII	ACGT	2 cut(s)	296, 457
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	63, 275, 561
MboI	GATC	3 cut(s)	61, 273, 559
MboII	GAAGA	6 cut(s)	9, 191, 235, 415, 458, 583
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	526
MluCI	AATT	2 cut(s)	517, 643
MmeI	TCCRAC	1 cut(s)	45
MroI	TCCGGA	1 cut(s)	397
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	1 cut(s)	320
MspI	CCGG	2 cut(s)	41, 398
MspR9I	CCNGG	1 cut(s)	590
MvaI	CCWGG	1 cut(s)	590
MvnI	CGCG	2 cut(s)	107, 192
MwoI	GCNNNNNNNGC	4 cut(s)	120, 162, 165, 503
NdeII	GATC	3 cut(s)	61, 273, 559
NlaIII	CATG	3 cut(s)	190, 319, 607
NlaIV	GGNNCC	1 cut(s)	524
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	2 cut(s)	190, 607
PceI	AGGCCT	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PfeI	GAWTC	3 cut(s)	256, 329, 346
PflMI	CCANNNNNTGG	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	588
PspN4I	GGNNCC	1 cut(s)	524
PspOMI	GGGCCC	1 cut(s)	522
PspPI	GGNCC	4 cut(s)	43, 148, 522, 523
PstI	CTGCAG	2 cut(s)	214, 267
PsuI	RGATCY	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	320
Rsr2I	CGGWCCG	1 cut(s)	148
RsrII	CGGWCCG	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	387
Sau3AI	GATC	3 cut(s)	61, 273, 559
Sau96I	GGNCC	4 cut(s)	43, 148, 522, 523
SbfI	CCTGCAGG	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	590
SdaI	CCTGCAGG	1 cut(s)	267
SduI	GDGCHC	1 cut(s)	526
SfaNI	GCATC	2 cut(s)	143, 543
SfcI	CTRYAG	2 cut(s)	210, 263
SinI	GGWCC	2 cut(s)	43, 148
SmiMI	CAYNNNNRTG	1 cut(s)	320
Sse8387I	CCTGCAGG	1 cut(s)	267
Sse9I	AATT	2 cut(s)	517, 643
SseBI	AGGCCT	1 cut(s)	497
SsiI	CCGC	4 cut(s)	107, 156, 192, 433
SspI	AATATT	1 cut(s)	583
StuI	AGGCCT	1 cut(s)	497
StyD4I	CCNGG	1 cut(s)	588
TaaI	ACNGT	4 cut(s)	28, 100, 142, 148
TaiI	ACGT	2 cut(s)	299, 460
TaqI	TCGA	1 cut(s)	349
TasI	AATT	2 cut(s)	517, 643
TauI	GCSGC	2 cut(s)	159, 195
TfiI	GAWTC	3 cut(s)	256, 329, 346
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	4 cut(s)	31, 86, 147, 508
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	8 cut(s)	8, 11, 123, 165, 209, 212, 506, 509
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	3 cut(s)	24, 338, 427
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	4 cut(s)	31, 86, 147, 508
Van91I	CCANNNNNTGG	1 cut(s)	519
VpaK11BI	GGWCC	2 cut(s)	43, 148
XagI	CCTNNNNNAGG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	643
XceI	RCATGY	2 cut(s)	190, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.