Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003642

Physical Location & Seq

Genomic Coordinates Reverse (-)

18948116 .. 18950120

Gene Structure 2005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGAGCCGACCACAAGATCCACCCCGAGGTTTCTTCCCATTTGGAAATCCCTTTCGGATGTTATCATCAAAGGGATCAGATTTATCGCCATGGCTACTTTCTCTATTGAACGGCTTTGAGCTACGTTTGGAAGAGAGACTGAAGAAACTTATGCCTAAGAACAAAGATGACATCCTCACTTTATCCTGGATGAAGCTAGCTATGGAGTCACTCTGCGAGACTCATAAGAACATTAACACTCTCATTACTGATCTCCAGCTTCCTGTCTCTGATTGGGAAGAGAAATGGGTTGATGTTTACCTCAACATAAGCGTTAGGTTACTAGATCTCTGTAATGCCTTTAGCTCTGAGCTCACACGTCTCAACCAGGGAGATCTCTTCCTCAAGTGTGTTCTGCACAATTTACAATCGGATTCTGGGGAGAAGTATCTCCAGGCTCGATCTTCGCTTGATAGCTGGAGGCAACATGTTAATACAAACAACCCTAGAATTGAAAACTGCCGTGCGGTTCTAGACAGTCTTGTTAAATCTCTGAGTCTGCCTAAAGTCAAGAACTCGCCTAAAGGAAAGGTTCTGATGCGAGCTTTTTATGGTGTGAAGGTTCAAACAGTTTATATCTGCAGTGTATTTACCGCAGCCTGGTCTGATTCCACCAAGGATCTTTTCGATTTACCTGTCTCTGAAAAACCATTATGGGCAAAGGTCTTTACTGATATGCAGAGTGTTGTAAATGCTGAGATCAGAGACATGTTGTCTTCCGGTAGAACCACGATTCTCAAAGAGCTGGAGAGCGTTGATGCTAGTGTCGAGAAGCTATACCCGATGATCCAAGATGGCGTTGATCCTGTCGAAGTTGAATTCTTCAAAGATAATGTTATGGAATTGGGGACACAAGCTGAGAAATTGTCTCAAGGGTTGGATCAGTTACTGGAGGAAGTTGATAGTTTCTTTAAACTGACTTTGAGAGGGCGCGATGTGTTGCTCTGTAATCTTAGGTCAAGTGACTCAATCTCTGGCAATGCAGTTGGAGAAGATGTAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

347

Amino Acids

39.35

Weight (kDa)

5.19

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46080
fragaria_vesca	FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070
malus_domestica	MD00G1111800.v1.1 MD01G1069200.v1.1
prunus_persica	Prupe.2G175300_v2.0.a1
pyrus_communis	pycom01g09860 pycom07g12990
rosa_chinensis	RchiOBHm_Chr1g0357181 RchiOBHm_Chr2g0136331 RchiOBHm_Chr2g0151201 RchiOBHm_Chr7g0201911
rosa_laevigata	RLG00000028046
rosa_multiflora	Rmu_sc0002070.1_g000062 Rmu_sc0006976.1_g000011
rosa_roxburghii	Rroxscaffold_4G00299010
rosa_rugosa	Rorug01G0254600 Rorug01G0254700 Rorug02G0231200
rosa_samantha	Rh1AG268900 Rh1BG236600 Rh1CG247100 Rh1CG252600 Rh1DG263700 Rh2AG259500 Rh5AG212900 Rh5DG553600 Rh7AG428800 Rh7CG447700
rosa_wichuraiana	Rw1G023330 Rw1G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1038
AccII	CGCG	1 cut(s)	972
AciI	CCGC	2 cut(s)	506, 633
AclWI	GGATC	6 cut(s)	11, 82, 666, 820, 836, 927
AcsI	RAATTY	1 cut(s)	857
AcuI	CTGAAG	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	26, 639
AflIII	ACRYGT	3 cut(s)	356, 466, 747
AgsI	TTSAA	5 cut(s)	109, 494, 605, 857, 865
AhdI	GACNNNNNGTC	1 cut(s)	751
AjiI	CACGTC	1 cut(s)	359
AjnI	CCWGG	4 cut(s)	185, 366, 432, 638
AjuI	GAANNNNNNNTTGG	2 cut(s)	647, 679
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	7 cut(s)	130, 212, 271, 365, 682, 738, 912
AlwI	GGATC	6 cut(s)	11, 82, 666, 820, 836, 927
AlwNI	CAGNNNCTG	1 cut(s)	928
Ama87I	CYCGRG	1 cut(s)	24
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	1 cut(s)	857
AspLEI	GCGC	1 cut(s)	972
AsuNHI	GCTAGC	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	747
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	647
BccI	CCATC	1 cut(s)	827
BceAI	ACGGC	2 cut(s)	127, 486
BciT130I	CCWGG	4 cut(s)	187, 368, 434, 640
BcoDI	GTCTC	7 cut(s)	130, 212, 271, 365, 682, 738, 912
BfaI	CTAG	5 cut(s)	197, 323, 486, 512, 801
BfmI	CTRYAG	1 cut(s)	619
BglII	AGATCT	2 cut(s)	325, 373
BisI	GCNGC	1 cut(s)	636
BlsI	GCNGC	1 cut(s)	637
Bme1390I	CCNGG	4 cut(s)	187, 368, 434, 640
BmeRI	GACNNNNNGTC	1 cut(s)	751
BmeT110I	CYCGRG	1 cut(s)	24
BmgBI	CACGTC	1 cut(s)	359
BmrFI	CCNGG	4 cut(s)	187, 368, 434, 640
BmsI	GCATC	2 cut(s)	567, 787
BmtI	GCTAGC	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	747
BpmI	CTGGAG	5 cut(s)	239, 416, 478, 806, 950
BpuEI	CTTGAG	2 cut(s)	368, 894
BsaJI	CCNNGG	4 cut(s)	25, 89, 367, 654
BsaWI	WCCGGW	1 cut(s)	758
BsaXI	ACNNNNNCTCC	1 cut(s)	1020
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 639
Bse1I	ACTGG	1 cut(s)	933
Bse3DI	GCAATG	1 cut(s)	1024
BseBI	CCWGG	4 cut(s)	187, 368, 434, 640
BseDI	CCNNGG	4 cut(s)	25, 89, 367, 654
BseGI	GGATG	3 cut(s)	63, 171, 195
BseLI	CCNNNNNNNGG	2 cut(s)	26, 639
BseMI	GCAATG	1 cut(s)	1024
BseMII	CTCAG	4 cut(s)	339, 524, 726, 888
BseNI	ACTGG	1 cut(s)	933
BseXI	GCAGC	1 cut(s)	647
BsgI	GTGCAG	1 cut(s)	380
Bsh1236I	CGCG	1 cut(s)	972
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	759
BslFI	GGGAC	1 cut(s)	901
BslI	CCNNNNNNNGG	2 cut(s)	26, 639
BsmAI	GTCTC	7 cut(s)	130, 212, 271, 365, 682, 738, 912
BsmBI	CGTCTC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	901
BsoBI	CYCGRG	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp19I	CCATGG	1 cut(s)	89
BspACI	CCGC	2 cut(s)	506, 633
BspCNI	CTCAG	4 cut(s)	340, 525, 727, 889
BspFNI	CGCG	1 cut(s)	972
BspMAI	CTGCAG	1 cut(s)	623
BspOI	GCTAGC	1 cut(s)	200
BspPI	GGATC	6 cut(s)	11, 82, 666, 820, 836, 927
BsrDI	GCAATG	1 cut(s)	1024
BsrI	ACTGG	1 cut(s)	933
BssECI	CCNNGG	4 cut(s)	25, 89, 367, 654
BssT1I	CCWWGG	2 cut(s)	89, 654
Bst2UI	CCWGG	4 cut(s)	187, 368, 434, 640
Bst4CI	ACNGT	2 cut(s)	518, 610
Bst6I	CTCTTC	3 cut(s)	126, 273, 383
BstC8I	GCNNGC	2 cut(s)	198, 582
BstDEI	CTNAG	6 cut(s)	156, 348, 533, 735, 897, 992
BstDSI	CCRYGG	1 cut(s)	89
BstF5I	GGATG	3 cut(s)	63, 171, 195
BstFNI	CGCG	1 cut(s)	972
BstHHI	GCGC	1 cut(s)	972
BstMAI	GTCTC	7 cut(s)	130, 212, 271, 365, 682, 738, 912
BstNI	CCWGG	4 cut(s)	187, 368, 434, 640
BstNSI	RCATGY	2 cut(s)	470, 751
BstSCI	CCNGG	4 cut(s)	185, 366, 432, 638
BstSFI	CTRYAG	1 cut(s)	619
BstUI	CGCG	1 cut(s)	972
BstV1I	GCAGC	1 cut(s)	647
BstV2I	GAAGAC	1 cut(s)	747
BstX2I	RGATCY	4 cut(s)	16, 325, 373, 658
BstYI	RGATCY	4 cut(s)	16, 325, 373, 658
BtgI	CCRYGG	1 cut(s)	89
BtgZI	GCGATG	1 cut(s)	987
BtrI	CACGTC	1 cut(s)	359
BtsCI	GGATG	3 cut(s)	63, 171, 195
BtsI	GCAGTG	1 cut(s)	628
BtsIMutI	CAGTG	1 cut(s)	628
Cac8I	GCNNGC	2 cut(s)	198, 582
CaiI	CAGNNNCTG	1 cut(s)	928
CfoI	GCGC	1 cut(s)	972
CviAII	CATG	3 cut(s)	90, 467, 748
DdeI	CTNAG	6 cut(s)	156, 348, 533, 735, 897, 992
DraI	TTTAAA	1 cut(s)	952
DriI	GACNNNNNGTC	1 cut(s)	751
Eam1104I	CTCTTC	3 cut(s)	126, 273, 383
Eam1105I	GACNNNNNGTC	1 cut(s)	751
EarI	CTCTTC	3 cut(s)	126, 273, 383
Ecl136II	GAGCTC	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	89, 654
Eco24I	GRGCYC	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	352
EcoRI	GAATTC	1 cut(s)	857
EcoRII	CCWGG	4 cut(s)	185, 366, 432, 638
EcoT14I	CCWWGG	2 cut(s)	89, 654
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	2 cut(s)	89, 654
Esp3I	CGTCTC	1 cut(s)	365
FaeI	CATG	3 cut(s)	93, 470, 751
FaqI	GGGAC	1 cut(s)	901
FatI	CATG	3 cut(s)	89, 466, 747
FblI	GTMKAC	1 cut(s)	1038
Fnu4HI	GCNGC	1 cut(s)	636
FokI	GGATG	3 cut(s)	70, 158, 202
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	1 cut(s)	636
FspBI	CTAG	5 cut(s)	197, 323, 486, 512, 801
GlaI	GCGC	1 cut(s)	971
GluI	GCNGC	1 cut(s)	636
GsuI	CTGGAG	5 cut(s)	239, 416, 478, 806, 950
HapII	CCGG	1 cut(s)	759
HhaI	GCGC	1 cut(s)	972
Hin1II	CATG	3 cut(s)	93, 470, 751
Hin6I	GCGC	1 cut(s)	970
HinP1I	GCGC	1 cut(s)	970
HinfI	GANTC	7 cut(s)	206, 220, 413, 535, 647, 772, 1004
HpaII	CCGG	1 cut(s)	759
Hpy166II	GTNNAC	2 cut(s)	298, 1039
Hpy188III	TCNNGA	3 cut(s)	512, 550, 808
Hpy8I	GTNNAC	2 cut(s)	298, 1039
HpyAV	CCTTC	1 cut(s)	592
HpyCH4III	ACNGT	2 cut(s)	518, 610
HpyCH4IV	ACGT	2 cut(s)	124, 358
HpyCH4V	TGCA	4 cut(s)	397, 621, 718, 1022
HpyF3I	CTNAG	6 cut(s)	156, 348, 533, 735, 897, 992
HpySE526I	ACGT	2 cut(s)	124, 358
Hsp92II	CATG	3 cut(s)	93, 470, 751
HspAI	GCGC	1 cut(s)	970
Lsp1109I	GCAGC	1 cut(s)	647
LweI	GCATC	2 cut(s)	567, 787
MaeI	CTAG	5 cut(s)	197, 323, 486, 512, 801
MaeII	ACGT	2 cut(s)	124, 358
MaeIII	GTNAC	4 cut(s)	207, 318, 924, 1001
MboII	GAAGA	9 cut(s)	25, 143, 154, 290, 370, 435, 747, 853, 1043
MflI	RGATCY	4 cut(s)	16, 325, 373, 658
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	5 cut(s)	400, 489, 857, 881, 902
MlyI	GAGTC	4 cut(s)	214, 215, 544, 998
MmeI	TCCRAC	2 cut(s)	897, 1006
MnlI	CCTC	7 cut(s)	20, 185, 311, 392, 453, 925, 959
MseI	TTAA	4 cut(s)	234, 471, 525, 951
MspI	CCGG	1 cut(s)	759
MspR9I	CCNGG	4 cut(s)	187, 368, 434, 640
MvaI	CCWGG	4 cut(s)	187, 368, 434, 640
MvnI	CGCG	1 cut(s)	972
NcoI	CCATGG	1 cut(s)	89
NheI	GCTAGC	1 cut(s)	196
NlaIII	CATG	3 cut(s)	93, 470, 751
NmuCI	GTSAC	2 cut(s)	207, 1001
NspI	RCATGY	2 cut(s)	470, 751
PciI	ACATGT	2 cut(s)	466, 747
PfeI	GAWTC	3 cut(s)	413, 647, 772
PfoI	TCCNGGA	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	637
PleI	GAGTC	4 cut(s)	214, 214, 543, 998
PpsI	GAGTC	4 cut(s)	214, 214, 543, 998
PscI	ACATGT	2 cut(s)	466, 747
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	4 cut(s)	185, 366, 432, 638
PspGI	CCWGG	4 cut(s)	185, 366, 432, 638
PstI	CTGCAG	1 cut(s)	623
PstNI	CAGNNNCTG	1 cut(s)	928
PsuI	RGATCY	4 cut(s)	16, 325, 373, 658
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	4 cut(s)	234, 471, 525, 951
SatI	GCNGC	1 cut(s)	636
SchI	GAGTC	4 cut(s)	214, 215, 544, 998
ScrFI	CCNGG	4 cut(s)	187, 368, 434, 640
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	2 cut(s)	567, 787
SfcI	CTRYAG	1 cut(s)	619
SmlI	CTYRAG	2 cut(s)	383, 909
SmoI	CTYRAG	2 cut(s)	383, 909
Sse9I	AATT	5 cut(s)	400, 489, 857, 881, 902
SsiI	CCGC	2 cut(s)	506, 633
SspMI	CTAG	5 cut(s)	197, 323, 486, 512, 801
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	4 cut(s)	185, 366, 432, 638
StyI	CCWWGG	2 cut(s)	89, 654
TaaI	ACNGT	2 cut(s)	518, 610
TaiI	ACGT	2 cut(s)	127, 361
TaqI	TCGA	4 cut(s)	439, 666, 807, 849
TasI	AATT	5 cut(s)	400, 489, 857, 881, 902
TfiI	GAWTC	3 cut(s)	413, 647, 772
Tru1I	TTAA	4 cut(s)	234, 471, 525, 951
Tru9I	TTAA	4 cut(s)	234, 471, 525, 951
TscAI	CASTG	1 cut(s)	628
TseFI	GTSAC	2 cut(s)	207, 1001
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	2 cut(s)	207, 1001
TspDTI	ATGAA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	628
XapI	RAATTY	1 cut(s)	857
XbaI	TCTAGA	1 cut(s)	511
XceI	RCATGY	2 cut(s)	470, 751
XmiI	GTMKAC	1 cut(s)	1038
XspI	CTAG	5 cut(s)	197, 323, 486, 512, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.