Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003642

Physical Location & Seq

Genomic Coordinates Forward (+)

14479711 .. 14480796

Gene Structure 1086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGATTGCACCAAAGGGTTCCCAGCTGTCTCCAAGGCTTCTTGGACTGTTGAATACTTTTGAGGAAACATTAGCTGGGAGGCTAAGAAAGCTTAACCCAAAAGACAAGGATGATGTCCTTAGCTTGTCATGGATGAAATTAGCTATGGAGTCTCTCTGTGGAACTCATAATGACATAAAATCCCTCATAGCTGAAATCGATCTCCCTGTGAGTAACTGGGATGAGAAATGGATTGATGTGTACTTGGACATCAGTGTGAAGTTGCTCGATGTATGCATTGCTTTTAGCTCTGAGATCTCACGTTTAAACCAGGGGCATCTTTATCTTCAATGCGTCTTGCATAATTTGGATTCAACTTCTTCGGACCAATTTATTCGGGCCCGTTCTTCACTTGATGGATGGAAGCATCATATTGGTTCAACAAACCCCAGAGTTGAGAACTGTAGCACCATTTTGGACAAGCTTGTGGAATCCCTTGACCTTCCAAAGGTTAAGAACTCAGCAAAAGGGAAACTTTTGATGCGTGCTATGTATGGAGTTAAGGTGTTGACAGTATCTGTTTGTAGTGTCTTTGCTGCTGCCTTTTCTGGTTCCGCAAAGAAGTTGTTAGAATTGAATGTTGCAGAGACATATTTGTGGGCACAAGCATTTAACGATTTACAGGGTAATGTAAATGGGGAAATTAGAAATGTATTTTCTAGTGGAAGAGTCATGGTACTGAAAGAGCTGGAAGCAGTTAATGATGTTGTTAAGGAACTGTATCCCAAGATTCAAGATGGCGTTGGCCTCACTGAAGGGAACACATTCAAGAATTCTGTTTCAGACTTGGACAGGAAGGCGCAGAAACTTTCTCAAGGGCTAGATCGTTCTTACAAACGAAGTGGATGGCTTTTTCCAAATCCTTTTAGCAGGACGCGACACATTGCTTTCCAAACTAAGATCAGGTGGATCAGTCTCAGAACGGATGCTGACGGGAAATGTGGAAGGTCAGTCGGTGAGATGAATGATGATCTTAGCAAGCCAACCTCTCTTATATATAAAGATGGTTTTAGGTATAGGGGTTTTATGTTTTCTTATTTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

362

Amino Acids

40.58

Weight (kDa)

8.92

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ROH1-like	PF05633	17 - 129	1.5e-07	Protein ROH1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46080
fragaria_vesca	FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070
malus_domestica	MD00G1111800.v1.1 MD01G1069200.v1.1
prunus_persica	Prupe.2G175300_v2.0.a1
pyrus_communis	pycom01g09860 pycom07g12990
rosa_chinensis	RchiOBHm_Chr1g0357181 RchiOBHm_Chr2g0136331 RchiOBHm_Chr2g0151201 RchiOBHm_Chr7g0201911
rosa_laevigata	RLG00000028046
rosa_multiflora	Rmu_sc0002070.1_g000062 Rmu_sc0006976.1_g000011
rosa_roxburghii	Rroxscaffold_4G00299010
rosa_rugosa	Rorug01G0254600 Rorug01G0254700 Rorug02G0231200
rosa_samantha	Rh1AG268900 Rh1BG236600 Rh1CG247100 Rh1CG252600 Rh1DG263700 Rh2AG259500 Rh5AG212900 Rh5DG553600 Rh7AG428800 Rh7CG447700
rosa_wichuraiana	Rw1G023330 Rw1G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	916
AciI	CCGC	1 cut(s)	594
AclWI	GGATC	1 cut(s)	956
AcsI	RAATTY	1 cut(s)	811
AcuI	CTGAAG	1 cut(s)	813
AfaI	GTAC	2 cut(s)	242, 717
AfiI	CCNNNNNNNGG	1 cut(s)	487
AgsI	TTSAA	7 cut(s)	52, 329, 354, 420, 616, 773, 808
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	9 cut(s)	25, 74, 91, 123, 143, 191, 288, 463, 727
AluI	AGCT	9 cut(s)	25, 74, 91, 123, 143, 191, 288, 463, 727
Alw26I	GTCTC	4 cut(s)	33, 156, 620, 959
AlwI	GGATC	1 cut(s)	956
AlwNI	CAGNNNCTG	1 cut(s)	557
AoxI	GGCC	2 cut(s)	378, 784
ApaI	GGGCCC	1 cut(s)	382
ApeKI	GCWGC	2 cut(s)	575, 578
ApoI	RAATTY	1 cut(s)	811
Asp700I	GAANNNNTTC	1 cut(s)	803
AspLEI	GCGC	1 cut(s)	841
AspS9I	GGNCC	3 cut(s)	364, 378, 379
AsuHPI	GGTGA	1 cut(s)	1007
AvaII	GGWCC	1 cut(s)	364
BaeGI	GKGCMC	2 cut(s)	382, 643
BanII	GRGCYC	1 cut(s)	382
BbvI	GCAGC	2 cut(s)	562, 565
BccI	CCATC	5 cut(s)	389, 393, 770, 879, 1037
BciT130I	CCWGG	1 cut(s)	311
BciVI	GTATCC	1 cut(s)	771
BcoDI	GTCTC	4 cut(s)	33, 156, 620, 959
BfaI	CTAG	2 cut(s)	699, 860
BfmI	CTRYAG	1 cut(s)	442
BfuI	GTATCC	1 cut(s)	771
BglII	AGATCT	1 cut(s)	294
BisI	GCNGC	2 cut(s)	576, 579
BlsI	GCNGC	2 cut(s)	577, 580
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	3 cut(s)	364, 378, 379
BmiI	GGNNCC	3 cut(s)	19, 380, 592
BmrFI	CCNGG	1 cut(s)	311
BmrI	ACTGGG	1 cut(s)	226
BmsI	GCATC	4 cut(s)	325, 415, 510, 955
BmuI	ACTGGG	1 cut(s)	226
Bpu10I	CCTNAGC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	837
Bsa29I	ATCGAT	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	32, 310
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	221
Bse3DI	GCAATG	2 cut(s)	276, 921
BseBI	CCWGG	1 cut(s)	311
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	32, 310
BseGI	GGATG	6 cut(s)	115, 138, 226, 404, 890, 970
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMI	GCAATG	2 cut(s)	276, 921
BseMII	CTCAG	3 cut(s)	282, 513, 970
BseNI	ACTGG	1 cut(s)	221
BseSI	GKGCMC	2 cut(s)	382, 643
BseXI	GCAGC	2 cut(s)	562, 565
BseYI	CCCAGC	2 cut(s)	21, 74
Bsh1236I	CGCG	1 cut(s)	916
BshFI	GGCC	2 cut(s)	380, 786
BshVI	ATCGAT	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	4 cut(s)	33, 156, 620, 959
BsnI	GGCC	2 cut(s)	380, 786
Bsp120I	GGGCCC	1 cut(s)	378
Bsp1286I	GDGCHC	2 cut(s)	382, 643
Bsp143I	GATC	6 cut(s)	199, 294, 862, 939, 948, 1009
BspACI	CCGC	1 cut(s)	594
BspANI	GGCC	2 cut(s)	380, 786
BspCNI	CTCAG	3 cut(s)	283, 512, 969
BspDI	ATCGAT	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	916
BspLI	GGNNCC	3 cut(s)	19, 380, 592
BspPI	GGATC	1 cut(s)	956
BsrDI	GCAATG	2 cut(s)	276, 921
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	2 cut(s)	32, 310
BssMI	GATC	6 cut(s)	199, 294, 862, 939, 948, 1009
BssT1I	CCWWGG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	4 cut(s)	48, 443, 553, 759
Bst6I	CTCTTC	1 cut(s)	700
BstC8I	GCNNGC	2 cut(s)	525, 1019
BstDEI	CTNAG	7 cut(s)	83, 119, 291, 499, 936, 956, 1013
BstENI	CCTNNNNNAGG	1 cut(s)	485
BstF5I	GGATG	6 cut(s)	115, 138, 226, 404, 890, 970
BstFNI	CGCG	1 cut(s)	916
BstHHI	GCGC	1 cut(s)	841
BstKTI	GATC	6 cut(s)	202, 297, 865, 942, 951, 1012
BstMAI	GTCTC	4 cut(s)	33, 156, 620, 959
BstMBI	GATC	6 cut(s)	199, 294, 862, 939, 948, 1009
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	309
BstSFI	CTRYAG	1 cut(s)	442
BstSLI	GKGCMC	2 cut(s)	382, 643
BstUI	CGCG	1 cut(s)	916
BstV1I	GCAGC	2 cut(s)	562, 565
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
Bsu15I	ATCGAT	1 cut(s)	198
BsuI	GTATCC	1 cut(s)	771
BsuRI	GGCC	2 cut(s)	380, 786
BsuTUI	ATCGAT	1 cut(s)	198
BtsCI	GGATG	6 cut(s)	115, 138, 226, 404, 890, 970
BtsIMutI	CAGTG	2 cut(s)	259, 789
Cac8I	GCNNGC	2 cut(s)	525, 1019
CaiI	CAGNNNCTG	1 cut(s)	557
CfoI	GCGC	1 cut(s)	841
Cfr13I	GGNCC	3 cut(s)	364, 378, 379
ClaI	ATCGAT	1 cut(s)	198
CseI	GACGC	2 cut(s)	322, 922
Csp6I	GTAC	2 cut(s)	241, 716
CspCI	CAANNNNNGTGG	2 cut(s)	862, 897
CviAII	CATG	2 cut(s)	129, 712
CviQI	GTAC	2 cut(s)	241, 716
DdeI	CTNAG	7 cut(s)	83, 119, 291, 499, 936, 956, 1013
DpnI	GATC	6 cut(s)	201, 296, 864, 941, 950, 1011
DpnII	GATC	6 cut(s)	199, 294, 862, 939, 948, 1009
DraI	TTTAAA	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	700
EarI	CTCTTC	1 cut(s)	700
Eco130I	CCWWGG	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	813
EcoNI	CCTNNNNNAGG	1 cut(s)	485
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	32
EcoT22I	ATGCAT	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	2 cut(s)	132, 715
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FatI	CATG	2 cut(s)	128, 711
Fnu4HI	GCNGC	2 cut(s)	576, 579
FokI	GGATG	6 cut(s)	122, 145, 233, 411, 897, 977
FriOI	GRGCYC	1 cut(s)	382
Fsp4HI	GCNGC	2 cut(s)	576, 579
FspBI	CTAG	2 cut(s)	699, 860
GlaI	GCGC	1 cut(s)	840
GluI	GCNGC	2 cut(s)	576, 579
GsaI	CCCAGC	2 cut(s)	25, 78
HaeIII	GGCC	2 cut(s)	380, 786
HgaI	GACGC	2 cut(s)	322, 922
HhaI	GCGC	1 cut(s)	841
Hin1II	CATG	2 cut(s)	132, 715
Hin6I	GCGC	1 cut(s)	839
HinP1I	GCGC	1 cut(s)	839
HincII	GTYRAC	1 cut(s)	549
HindII	GTYRAC	1 cut(s)	549
HindIII	AAGCTT	2 cut(s)	89, 461
HinfI	GANTC	5 cut(s)	149, 350, 470, 708, 769
HphI	GGTGA	1 cut(s)	1007
Hpy166II	GTNNAC	2 cut(s)	241, 549
Hpy188I	TCNGA	4 cut(s)	292, 364, 823, 959
Hpy188III	TCNNGA	2 cut(s)	773, 808
Hpy8I	GTNNAC	2 cut(s)	241, 549
HpyAV	CCTTC	4 cut(s)	491, 788, 829, 978
HpyCH4III	ACNGT	4 cut(s)	48, 443, 553, 759
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	4 cut(s)	8, 276, 340, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	7 cut(s)	83, 119, 291, 499, 936, 956, 1013
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	2 cut(s)	132, 715
HspAI	GCGC	1 cut(s)	839
Kzo9I	GATC	6 cut(s)	199, 294, 862, 939, 948, 1009
Lsp1109I	GCAGC	2 cut(s)	562, 565
LweI	GCATC	4 cut(s)	325, 415, 510, 955
MaeI	CTAG	2 cut(s)	699, 860
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	6 cut(s)	201, 296, 864, 941, 950, 1011
MboI	GATC	6 cut(s)	199, 294, 862, 939, 948, 1009
MboII	GAAGA	4 cut(s)	317, 351, 378, 717
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	2 cut(s)	382, 643
MluCI	AATT	6 cut(s)	137, 343, 368, 611, 681, 811
MlyI	GAGTC	2 cut(s)	158, 717
MnlI	CCTC	5 cut(s)	55, 72, 194, 797, 1036
Mph1103I	ATGCAT	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	803
MseI	TTAA	7 cut(s)	93, 305, 492, 540, 651, 738, 750
MslI	CAYNNNNRTG	2 cut(s)	254, 634
MspA1I	CMGCKG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	311
MssI	GTTTAAAC	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	1 cut(s)	916
MwoI	GCNNNNNNNGC	1 cut(s)	88
NdeII	GATC	6 cut(s)	199, 294, 862, 939, 948, 1009
NlaIII	CATG	2 cut(s)	132, 715
NlaIV	GGNNCC	3 cut(s)	19, 380, 592
NsiI	ATGCAT	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	803
PfeI	GAWTC	3 cut(s)	350, 470, 769
PkrI	GCNGC	2 cut(s)	577, 580
PleI	GAGTC	2 cut(s)	157, 716
PmeI	GTTTAAAC	1 cut(s)	306
PpsI	GAGTC	2 cut(s)	157, 716
Psp6I	CCWGG	1 cut(s)	309
PspFI	CCCAGC	2 cut(s)	21, 74
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	3 cut(s)	19, 380, 592
PspOMI	GGGCCC	1 cut(s)	378
PspPI	GGNCC	3 cut(s)	364, 378, 379
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	294
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	242, 717
RsaNI	GTAC	2 cut(s)	241, 716
RseI	CAYNNNNRTG	2 cut(s)	254, 634
SaqAI	TTAA	7 cut(s)	93, 305, 492, 540, 651, 738, 750
SatI	GCNGC	2 cut(s)	576, 579
Sau3AI	GATC	6 cut(s)	199, 294, 862, 939, 948, 1009
Sau96I	GGNCC	3 cut(s)	364, 378, 379
SchI	GAGTC	2 cut(s)	158, 717
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	2 cut(s)	382, 643
SfaNI	GCATC	4 cut(s)	325, 415, 510, 955
SfcI	CTRYAG	1 cut(s)	442
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	2 cut(s)	254, 634
SmlI	CTYRAG	1 cut(s)	852
SmoI	CTYRAG	1 cut(s)	852
Sse9I	AATT	6 cut(s)	137, 343, 368, 611, 681, 811
SsiI	CCGC	1 cut(s)	594
SspMI	CTAG	2 cut(s)	699, 860
StyD4I	CCNGG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	4 cut(s)	48, 443, 553, 759
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	2 cut(s)	198, 267
TasI	AATT	6 cut(s)	137, 343, 368, 611, 681, 811
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	3 cut(s)	350, 470, 769
Tru1I	TTAA	7 cut(s)	93, 305, 492, 540, 651, 738, 750
Tru9I	TTAA	7 cut(s)	93, 305, 492, 540, 651, 738, 750
TscAI	CASTG	2 cut(s)	259, 796
TseI	GCWGC	2 cut(s)	575, 578
TspDTI	ATGAA	2 cut(s)	149, 1016
TspGWI	ACGGA	1 cut(s)	977
TspRI	CASTG	2 cut(s)	259, 796
VpaK11BI	GGWCC	1 cut(s)	364
XagI	CCTNNNNNAGG	1 cut(s)	485
XapI	RAATTY	1 cut(s)	811
XmnI	GAANNNNTTC	1 cut(s)	803
XspI	CTAG	2 cut(s)	699, 860
Zsp2I	ATGCAT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.