Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003642

Physical Location & Seq

Genomic Coordinates Reverse (-)

29808049 .. 29808354

Gene Structure 306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG259500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGATTTCGCCGAAGGGTTCTCAAATGACTCCGAACCTTTCTGCACTGCTGAACACTTTTGAGGAAACATTGGCTGGGAGGTTGAGAAAGCTCAATCCAAAAGATAACAATGATGTCCTTAGCTTGTCATGGATGAAATTGGCAATGGAGTCGCTTTGTGGAACTCGTAATGACATAAAAACTCTCATAGCTGAGATTGATCTTCACGTGAGTGCTTGGGATGAGAAGTGGATTGATGTGTACTTGGACATCAGTGTAAAGTTGCTCGATATATGCATTGTCTTCAGCTCTGAGTCGCACGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

101

Amino Acids

11.36

Weight (kDa)

4.99

Isoelectric Point (pI)

27.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ROH1-like	PF05633	16 - 93	1.4e-06	Protein ROH1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46080
fragaria_vesca	FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070
malus_domestica	MD00G1111800.v1.1 MD01G1069200.v1.1
prunus_persica	Prupe.2G175300_v2.0.a1
pyrus_communis	pycom01g09860 pycom07g12990
rosa_chinensis	RchiOBHm_Chr1g0357181 RchiOBHm_Chr2g0136331 RchiOBHm_Chr2g0151201 RchiOBHm_Chr7g0201911
rosa_laevigata	RLG00000028046
rosa_multiflora	Rmu_sc0002070.1_g000062 Rmu_sc0006976.1_g000011
rosa_roxburghii	Rroxscaffold_4G00299010
rosa_rugosa	Rorug01G0254600 Rorug01G0254700 Rorug02G0231200
rosa_samantha	Rh1AG268900 Rh1BG236600 Rh1CG247100 Rh1CG252600 Rh1DG263700 Rh2AG259500 Rh5AG212900 Rh5DG553600 Rh7AG428800 Rh7CG447700
rosa_wichuraiana	Rw1G023330 Rw1G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	268
AcvI	CACGTG	1 cut(s)	208
AfaI	GTAC	1 cut(s)	242
AleI	CACNNNNGTG	1 cut(s)	210
AluBI	AGCT	4 cut(s)	91, 123, 191, 288
AluI	AGCT	4 cut(s)	91, 123, 191, 288
BbrPI	CACGTG	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	274
BcgI	CGANNNNNNTGC	2 cut(s)	132, 166
BpiI	GAAGAC	1 cut(s)	274
Bpu10I	CCTNAGC	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	150
BseGI	GGATG	2 cut(s)	138, 226
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	2 cut(s)	183, 282
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	199
BspCNI	CTCAG	2 cut(s)	184, 283
BsrDI	GCAATG	1 cut(s)	150
BssMI	GATC	1 cut(s)	199
BstBAI	YACGTR	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	3 cut(s)	119, 192, 291
BstF5I	GGATG	2 cut(s)	138, 226
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	138, 226
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	2 cut(s)	44, 259
Cac8I	GCNNGC	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	1 cut(s)	129
CviJI	RGCY	5 cut(s)	74, 91, 123, 191, 288
CviKI_1	RGCY	5 cut(s)	74, 91, 123, 191, 288
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	3 cut(s)	119, 192, 291
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	268
Eco72I	CACGTG	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	278
FaeI	CATG	1 cut(s)	132
FaiI	YATR	5 cut(s)	130, 176, 188, 272, 274
FatI	CATG	1 cut(s)	128
FokI	GGATG	2 cut(s)	145, 233
GsaI	CCCAGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	132
HinfI	GANTC	3 cut(s)	28, 149, 293
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	33, 292
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	2 cut(s)	44, 276
HpyF3I	CTNAG	3 cut(s)	119, 192, 291
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	207
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	2 cut(s)	194, 274
MluCI	AATT	1 cut(s)	137
MlyI	GAGTC	3 cut(s)	22, 158, 302
MnlI	CCTC	2 cut(s)	55, 72
Mph1103I	ATGCAT	1 cut(s)	278
MseI	TTAA	1 cut(s)	304
MslI	CAYNNNNRTG	1 cut(s)	210
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	1 cut(s)	132
NsiI	ATGCAT	1 cut(s)	278
OliI	CACNNNNGTG	1 cut(s)	210
PleI	GAGTC	3 cut(s)	22, 157, 301
PmaCI	CACGTG	1 cut(s)	208
PmlI	CACGTG	1 cut(s)	208
PpsI	GAGTC	3 cut(s)	22, 157, 301
Ppu21I	YACGTR	1 cut(s)	208
PspCI	CACGTG	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	304
Sau3AI	GATC	1 cut(s)	199
SchI	GAGTC	3 cut(s)	22, 158, 302
SetI	ASST	7 cut(s)	39, 83, 93, 125, 193, 210, 290
SgeI	CNNG	9 cut(s)	87, 136, 141, 177, 218, 220, 228, 256, 278
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	1 cut(s)	137
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	267
TasI	AATT	1 cut(s)	137
TatI	WGTACW	1 cut(s)	240
Tru1I	TTAA	1 cut(s)	304
Tru9I	TTAA	1 cut(s)	304
TscAI	CASTG	2 cut(s)	51, 259
TspDTI	ATGAA	1 cut(s)	149
TspRI	CASTG	2 cut(s)	51, 259
Zsp2I	ATGCAT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.