Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003642

Physical Location & Seq

Genomic Coordinates Forward (+)

23033598 .. 23040146

Gene Structure 6549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0231200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGAAAGAACTATGTAACAACTTCCGAGTCTGGACTATTCACACAGAGAGAGAGAGAGAGAGAGTTGAAATGGAAGAGTTAAGAAAGCTAGAAGAGGTACAGAGAACACTGACGTTTCTTCAATCGCGAGGCATCACAAATGACAATGACGACTGTAATTGCTTCCTTTCCAAGCTCACCCTCCTCCTGGTACAACCTTGTGGGGAGCTTGATTTGGAAAACAAGTGTGCTTTGGTTTCTGAGTATATGCCGAAGATATCTGCTGCAATTCTTGATGAAGCATCTAGCAACCTCACCGGCAAAGGCTATGAAGAAAATTGTGTTGAAAATTCTTTGCCCCTTGACTTTGGCCACAAGTCAGAGTCTGGTCCATTGCAAACTAATTTTGAAGAAATAGCTATGGTGGGACTGGATGCAATGCAACGAGCAAATTCAACCCTCGAAGATTTTTGCAGGTCTTATTTTATGTTTCATGGCATGGATATAAACAAACCACAATCAGTATTCCAATATCTTCCTATGCTTTCATTTGTAGAAAGTTACATTTATCAGCTTGACGATTTGAATGAGAAGACGGTGCAAGCATCAAGCAGTGAAATGACCATTTCAGAAAGAGGAACTGCAGTGGAAGGTCTTGGGAAAATTTCTCAGTTTTCAAATGTGTTTAAAAGTGATCCTTTCAGGCCACTCGAATGTCTACTTGAATCCCATGTCCTTTTGACAAAGAGAATGCAAGATGAATTCAAGTGTGGAGAAGAGTATTGGGCTCTGGAAAGAAAACTTTGTCATGCACTTAATAATAAATTGCAGATCTCAGTTGAAGATGCAATGAAGGCAATTCATCTCAAATCCTTTGATTATCGAGTGCTGAATCTTTTACTGTACCAGTTGAGAGGAGAAAAGGTCAATGAGTTGCACATGGAATTTCTGTCTGTCTCAGAATTCCTAGTTGAGGTAGCTGATGATTTGTTTGACTATGAGGAGGATGTATTAGAAAATAATTTCAATATATTGCGCATGTTTGTCAGAATATATGGAGCTTCTGCCCCTACAGTGCTGGCAAAATACATAACTGAGGCCGAAGAGAAGTACAATCAAGTGTTGAAAGCGTTGGATCCTCAGCTGTCTATGCATTACCAGAGAAGATGTGTAGAAGCCACTAAAGAAGGAGGGAATATGTCAGGGCATCCTCTCGGAACATGGAGCATACCACCTTTAATATTAGATGAGGAATTCTATCGATGCAGTCTATTAGATACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

421

Amino Acids

48.54

Weight (kDa)

4.81

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46080
fragaria_vesca	FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070
malus_domestica	MD00G1111800.v1.1 MD01G1069200.v1.1
prunus_persica	Prupe.2G175300_v2.0.a1
pyrus_communis	pycom01g09860 pycom07g12990
rosa_chinensis	RchiOBHm_Chr1g0357181 RchiOBHm_Chr2g0136331 RchiOBHm_Chr2g0151201 RchiOBHm_Chr7g0201911
rosa_laevigata	RLG00000028046
rosa_multiflora	Rmu_sc0002070.1_g000062 Rmu_sc0006976.1_g000011
rosa_roxburghii	Rroxscaffold_4G00299010
rosa_rugosa	Rorug01G0254600 Rorug01G0254700 Rorug02G0231200
rosa_samantha	Rh1AG268900 Rh1BG236600 Rh1CG247100 Rh1CG252600 Rh1DG263700 Rh2AG259500 Rh5AG212900 Rh5DG553600 Rh7AG428800 Rh7CG447700
rosa_wichuraiana	Rw1G023330 Rw1G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1016
Acc36I	ACCTGC	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	697
AccII	CGCG	1 cut(s)	127
AclWI	GGATC	3 cut(s)	668, 1109, 1122
AcoI	YGGCCR	1 cut(s)	349
AcsI	RAATTY	7 cut(s)	328, 430, 642, 740, 923, 941, 1232
AfaI	GTAC	4 cut(s)	99, 192, 884, 1091
AfiI	CCNNNNNNNGG	2 cut(s)	187, 952
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	8 cut(s)	88, 175, 208, 398, 553, 959, 1040, 1123
AluI	AGCT	8 cut(s)	88, 175, 208, 398, 553, 959, 1040, 1123
Alw26I	GTCTC	1 cut(s)	940
AlwI	GGATC	3 cut(s)	668, 1109, 1122
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	3 cut(s)	349, 683, 1077
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	7 cut(s)	328, 430, 642, 740, 923, 941, 1232
AspLEI	GCGC	1 cut(s)	1017
AspS9I	GGNCC	1 cut(s)	368
AsuHPI	GGTGA	2 cut(s)	169, 286
AvaII	GGWCC	1 cut(s)	368
BalI	TGGCCA	1 cut(s)	351
BamHI	GGATCC	1 cut(s)	1114
BanII	GRGCYC	1 cut(s)	769
BbsI	GAAGAC	1 cut(s)	578
BbvCI	CCTCAGC	1 cut(s)	1119
BbvI	GCAGC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	940
BfaI	CTAG	3 cut(s)	89, 285, 947
BfmI	CTRYAG	2 cut(s)	621, 1050
BfuAI	ACCTGC	1 cut(s)	444
BglII	AGATCT	1 cut(s)	810
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	1116
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	7 cut(s)	141, 290, 403, 593, 814, 1195, 1232
BpiI	GAAGAC	1 cut(s)	578
Bpu10I	CCTNAGC	1 cut(s)	1119
Bsa29I	ATCGAT	1 cut(s)	1240
BsaXI	ACNNNNNCTCC	2 cut(s)	888, 918
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 952
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	2 cut(s)	414, 886
Bse3DI	GCAATG	3 cut(s)	371, 423, 834
BseBI	CCWGG	1 cut(s)	188
BseCI	ATCGAT	1 cut(s)	1240
BseGI	GGATG	3 cut(s)	418, 991, 1186
BseLI	CCNNNNNNNGG	2 cut(s)	187, 952
BseMI	GCAATG	3 cut(s)	371, 423, 834
BseMII	CTCAG	6 cut(s)	231, 662, 828, 951, 1065, 1133
BseNI	ACTGG	2 cut(s)	414, 886
BseRI	GAGGAG	3 cut(s)	173, 909, 995
BseXI	GCAGC	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	3 cut(s)	351, 685, 1079
BshVI	ATCGAT	1 cut(s)	1240
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	420
BslI	CCNNNNNNNGG	2 cut(s)	187, 952
BsmAI	GTCTC	1 cut(s)	940
BsmFI	GGGAC	1 cut(s)	420
BsmI	GAATGC	1 cut(s)	735
BsnI	GGCC	3 cut(s)	351, 685, 1079
Bsp1286I	GDGCHC	1 cut(s)	769
Bsp143I	GATC	3 cut(s)	673, 810, 1114
Bsp68I	TCGCGA	1 cut(s)	127
BspANI	GGCC	3 cut(s)	351, 685, 1079
BspCNI	CTCAG	6 cut(s)	232, 661, 827, 950, 1066, 1132
BspDI	ATCGAT	1 cut(s)	1240
BspFNI	CGCG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	1116
BspMAI	CTGCAG	1 cut(s)	625
BspMI	ACCTGC	1 cut(s)	444
BspPI	GGATC	3 cut(s)	668, 1109, 1122
BsrDI	GCAATG	3 cut(s)	371, 423, 834
BsrFI	RCCGGY	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	414, 886
BssAI	RCCGGY	1 cut(s)	296
BssMI	GATC	3 cut(s)	673, 810, 1114
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	4 cut(s)	155, 577, 882, 1054
Bst6I	CTCTTC	4 cut(s)	69, 87, 750, 1077
BstC8I	GCNNGC	2 cut(s)	582, 1059
BstDEI	CTNAG	6 cut(s)	240, 648, 814, 937, 1074, 1119
BstENI	CCTNNNNNAGG	1 cut(s)	950
BstF5I	GGATG	3 cut(s)	418, 991, 1186
BstFNI	CGCG	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	1017
BstKTI	GATC	3 cut(s)	676, 813, 1117
BstMAI	GTCTC	1 cut(s)	940
BstMBI	GATC	3 cut(s)	673, 810, 1114
BstMWI	GCNNNNNNNGC	2 cut(s)	833, 1129
BstNI	CCWGG	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	1021
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	2 cut(s)	621, 1050
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	250
BstV2I	GAAGAC	1 cut(s)	578
BstX2I	RGATCY	2 cut(s)	810, 1114
BstYI	RGATCY	2 cut(s)	810, 1114
Bsu15I	ATCGAT	1 cut(s)	1240
BsuRI	GGCC	3 cut(s)	351, 685, 1079
BsuTUI	ATCGAT	1 cut(s)	1240
BtsCI	GGATG	3 cut(s)	418, 991, 1186
BtsI	GCAGTG	2 cut(s)	598, 630
BtsIMutI	CAGTG	4 cut(s)	107, 598, 630, 1059
BtuMI	TCGCGA	1 cut(s)	127
BveI	ACCTGC	1 cut(s)	444
Cac8I	GCNNGC	2 cut(s)	582, 1059
CaiI	CAGNNNCTG	1 cut(s)	365
CfoI	GCGC	1 cut(s)	1017
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	368
ClaI	ATCGAT	1 cut(s)	1240
Csp6I	GTAC	4 cut(s)	98, 191, 883, 1090
CviAII	CATG	7 cut(s)	473, 478, 710, 788, 919, 1018, 1200
CviQI	GTAC	4 cut(s)	98, 191, 883, 1090
DdeI	CTNAG	6 cut(s)	240, 648, 814, 937, 1074, 1119
DpnI	GATC	3 cut(s)	675, 812, 1116
DpnII	GATC	3 cut(s)	673, 810, 1114
DraI	TTTAAA	1 cut(s)	667
EaeI	YGGCCR	1 cut(s)	349
Eam1104I	CTCTTC	4 cut(s)	69, 87, 750, 1077
EarI	CTCTTC	4 cut(s)	69, 87, 750, 1077
Eco24I	GRGCYC	1 cut(s)	769
Eco32I	GATATC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	368
EcoNI	CCTNNNNNAGG	1 cut(s)	950
EcoRI	GAATTC	3 cut(s)	740, 941, 1232
EcoRII	CCWGG	1 cut(s)	186
EcoRV	GATATC	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	1134
EcoT38I	GRGCYC	1 cut(s)	769
FaeI	CATG	7 cut(s)	476, 481, 713, 791, 922, 1021, 1203
FalI	AAGNNNNNCTT	2 cut(s)	661, 693
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	7 cut(s)	472, 477, 709, 787, 918, 1017, 1199
FblI	GTMKAC	1 cut(s)	697
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	3 cut(s)	425, 998, 1173
FriOI	GRGCYC	1 cut(s)	769
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	3 cut(s)	89, 285, 947
FspI	TGCGCA	1 cut(s)	1016
GlaI	GCGC	1 cut(s)	1016
GluI	GCNGC	1 cut(s)	264
HaeIII	GGCC	3 cut(s)	351, 685, 1079
HapII	CCGG	1 cut(s)	297
HhaI	GCGC	1 cut(s)	1017
Hin1II	CATG	7 cut(s)	476, 481, 713, 791, 922, 1021, 1203
Hin6I	GCGC	1 cut(s)	1015
HinP1I	GCGC	1 cut(s)	1015
HinfI	GANTC	4 cut(s)	27, 362, 704, 871
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	2 cut(s)	169, 286
Hpy166II	GTNNAC	1 cut(s)	698
Hpy188I	TCNGA	7 cut(s)	26, 241, 361, 610, 940, 1028, 1196
Hpy188III	TCNNGA	4 cut(s)	31, 126, 272, 770
Hpy8I	GTNNAC	1 cut(s)	698
HpyAV	CCTTC	3 cut(s)	623, 826, 1160
HpyCH4III	ACNGT	4 cut(s)	155, 577, 882, 1054
HpyCH4IV	ACGT	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	833, 1129
HpyF3I	CTNAG	6 cut(s)	240, 648, 814, 937, 1074, 1119
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	7 cut(s)	476, 481, 713, 791, 922, 1021, 1203
HspAI	GCGC	1 cut(s)	1015
Kzo9I	GATC	3 cut(s)	673, 810, 1114
LmnI	GCTCC	3 cut(s)	205, 1037, 1203
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	7 cut(s)	141, 290, 403, 593, 814, 1195, 1232
MaeI	CTAG	3 cut(s)	89, 285, 947
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	2 cut(s)	14, 539
MalI	GATC	3 cut(s)	675, 812, 1116
MboI	GATC	3 cut(s)	673, 810, 1114
MflI	RGATCY	2 cut(s)	810, 1114
MhlI	GDGCHC	1 cut(s)	769
MlsI	TGGCCA	1 cut(s)	351
MluNI	TGGCCA	1 cut(s)	351
MlyI	GAGTC	2 cut(s)	36, 371
MmeI	TCCRAC	1 cut(s)	1092
Mox20I	TGGCCA	1 cut(s)	351
Mph1103I	ATGCAT	1 cut(s)	1134
MscI	TGGCCA	1 cut(s)	351
MseI	TTAA	4 cut(s)	80, 666, 795, 1217
MslI	CAYNNNNRTG	1 cut(s)	691
Msp20I	TGGCCA	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	1123
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	735
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	833, 1129
NdeII	GATC	3 cut(s)	673, 810, 1114
NlaIII	CATG	7 cut(s)	476, 481, 713, 791, 922, 1021, 1203
NlaIV	GGNNCC	1 cut(s)	1116
NruI	TCGCGA	1 cut(s)	127
NsbI	TGCGCA	1 cut(s)	1016
NsiI	ATGCAT	1 cut(s)	1134
NspI	RCATGY	1 cut(s)	1021
PctI	GAATGC	1 cut(s)	735
PfeI	GAWTC	2 cut(s)	704, 871
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	2 cut(s)	35, 370
PpsI	GAGTC	2 cut(s)	35, 370
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	1116
PspPI	GGNCC	1 cut(s)	368
PstI	CTGCAG	1 cut(s)	625
PstNI	CAGNNNCTG	1 cut(s)	365
PsuI	RGATCY	2 cut(s)	810, 1114
PvuII	CAGCTG	1 cut(s)	1123
RruI	TCGCGA	1 cut(s)	127
RsaI	GTAC	4 cut(s)	99, 192, 884, 1091
RsaNI	GTAC	4 cut(s)	98, 191, 883, 1090
RseI	CAYNNNNRTG	1 cut(s)	691
SaqAI	TTAA	4 cut(s)	80, 666, 795, 1217
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	3 cut(s)	673, 810, 1114
Sau96I	GGNCC	1 cut(s)	368
SchI	GAGTC	2 cut(s)	36, 371
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	769
SfaNI	GCATC	7 cut(s)	141, 290, 403, 593, 814, 1195, 1232
SfcI	CTRYAG	2 cut(s)	621, 1050
SinI	GGWCC	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	691
SspI	AATATT	1 cut(s)	1221
SspMI	CTAG	3 cut(s)	89, 285, 947
StyD4I	CCNGG	1 cut(s)	186
TaaI	ACNGT	4 cut(s)	155, 577, 882, 1054
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	4 cut(s)	441, 690, 862, 1240
TatI	WGTACW	1 cut(s)	1089
TfiI	GAWTC	2 cut(s)	704, 871
Tru1I	TTAA	4 cut(s)	80, 666, 795, 1217
Tru9I	TTAA	4 cut(s)	80, 666, 795, 1217
TscAI	CASTG	4 cut(s)	114, 598, 630, 1059
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	8 cut(s)	17, 291, 324, 461, 516, 753, 830, 845
TspRI	CASTG	4 cut(s)	114, 598, 630, 1059
VpaK11BI	GGWCC	1 cut(s)	368
XagI	CCTNNNNNAGG	1 cut(s)	950
XapI	RAATTY	7 cut(s)	328, 430, 642, 740, 923, 941, 1232
XceI	RCATGY	1 cut(s)	1021
XmiI	GTMKAC	1 cut(s)	697
XspI	CTAG	3 cut(s)	89, 285, 947
Zsp2I	ATGCAT	1 cut(s)	1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.