Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003642

Physical Location & Seq

Genomic Coordinates Forward (+)

19538048 .. 19539547

Gene Structure 1500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18073

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGATGTCCTTAGCATGGATGAAATTGGCAATGGAGTCGCTTTGTGGAACTCGTAATGACATAAAAACTCTTATAGCTGAGATTGATCTTCCCGTGAGTGCTTGGGATGAGAAGTGGATTGATGTGTACTTGGAGATCAGTGTAAAGTTGCTCGATATATGCATTGTCTTCAGCTCTGAGATCGCACACTTAAACCAGGGGCATTTGTTTCTTCAGTTTGTGTTGCATAATTTGAATTCAGCCTCTTCGAAGCAATTTATTCGTGCCCGTTCTTCAGTTGATGACTGGAAGAATCATATTGCTTCAAAGAACCCCAGGGTTGAGAACTGTAGCACCATTTTGGACAAGCTTGTGGAATCACTGGATCTACCAAAGGTTAAGAACTCAGCAAAAGGGAAACTTTTAATGCGTGCTATGTATGGAGTGAAGGTGTTGACAGTATCTGTTTGTAGTGTCTTTGCCGCAGCCTTTTCTGGTTCTGCAAGCAAGTTGTTAGATTTGAATGTTGTCGAGACATATATGTGGGCACAAGCATTTAATGACTTACAGAGTAATGTAAATGGGGAAATTAGAAATGTACTTTCTAGTGGTAGAGTTACGGTACTGAAAGAGCTGGAAGCAGTTGATGGTATTGTGAAGCACTTGTATCCTATGATCCAAGATGACGTGGCCCTCGCAGAAGAAGAAGCATTCAAGAATTCTACTTCAGATTTAGAAAGGAAGGCACATAATCTTTCCCAAGGACTTGATCTTCTGACCAAGGAAGCGGATGGGTTTTTCCAAATCCTTTTGACTGGACATGTCACTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

270

Amino Acids

30.06

Weight (kDa)

5.66

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46080
fragaria_vesca	FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070
malus_domestica	MD00G1111800.v1.1 MD01G1069200.v1.1
prunus_persica	Prupe.2G175300_v2.0.a1
pyrus_communis	pycom01g09860 pycom07g12990
rosa_chinensis	RchiOBHm_Chr1g0357181 RchiOBHm_Chr2g0136331 RchiOBHm_Chr2g0151201 RchiOBHm_Chr7g0201911
rosa_laevigata	RLG00000028046
rosa_multiflora	Rmu_sc0002070.1_g000062 Rmu_sc0006976.1_g000011
rosa_roxburghii	Rroxscaffold_4G00299010
rosa_rugosa	Rorug01G0254600 Rorug01G0254700 Rorug02G0231200
rosa_samantha	Rh1AG268900 Rh1BG236600 Rh1CG247100 Rh1CG252600 Rh1DG263700 Rh2AG259500 Rh5AG212900 Rh5DG553600 Rh7AG428800 Rh7CG447700
rosa_wichuraiana	Rw1G023330 Rw1G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	462, 767
AclWI	GGATC	2 cut(s)	372, 649
AcsI	RAATTY	2 cut(s)	235, 697
AcuI	CTGAAG	4 cut(s)	154, 197, 258, 690
AfaI	GTAC	3 cut(s)	128, 579, 603
AfiI	CCNNNNNNNGG	1 cut(s)	15
AflIII	ACRYGT	1 cut(s)	799
AgsI	TTSAA	4 cut(s)	235, 306, 502, 694
AjiI	CACGTC	1 cut(s)	667
AjnI	CCWGG	2 cut(s)	195, 314
AluBI	AGCT	4 cut(s)	77, 174, 349, 613
AluI	AGCT	4 cut(s)	77, 174, 349, 613
Alw26I	GTCTC	1 cut(s)	506
AlwI	GGATC	2 cut(s)	372, 649
AlwNI	CAGNNNCTG	1 cut(s)	443
AoxI	GGCC	1 cut(s)	669
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	2 cut(s)	235, 697
AspS9I	GGNCC	1 cut(s)	670
AsuII	TTCGAA	1 cut(s)	248
BaeGI	GKGCMC	2 cut(s)	268, 529
BbsI	GAAGAC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	476
BccI	CCATC	2 cut(s)	620, 764
BcgI	CGANNNNNNTGC	4 cut(s)	18, 52, 242, 276
BciT130I	CCWGG	2 cut(s)	197, 316
BciVI	GTATCC	1 cut(s)	657
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	657
BisI	GCNGC	2 cut(s)	462, 465
BlsI	GCNGC	2 cut(s)	463, 466
Bme1390I	CCNGG	2 cut(s)	197, 316
BmgBI	CACGTC	1 cut(s)	667
BmgT120I	GGNCC	1 cut(s)	670
BmrFI	CCNGG	2 cut(s)	197, 316
BpiI	GAAGAC	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	10
Bpu14I	TTCGAA	1 cut(s)	248
BsaJI	CCNNGG	5 cut(s)	196, 314, 315, 739, 759
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse1I	ACTGG	3 cut(s)	290, 366, 799
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	197, 316
BseDI	CCNNGG	5 cut(s)	196, 314, 315, 739, 759
BseGI	GGATG	3 cut(s)	24, 112, 775
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	3 cut(s)	69, 168, 399
BseNI	ACTGG	3 cut(s)	290, 366, 799
BseSI	GKGCMC	2 cut(s)	268, 529
BseXI	GCAGC	1 cut(s)	476
BshFI	GGCC	1 cut(s)	671
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	506
BsmI	GAATGC	1 cut(s)	689
BsnI	GGCC	1 cut(s)	671
Bsp119I	TTCGAA	1 cut(s)	248
Bsp1286I	GDGCHC	2 cut(s)	268, 529
Bsp143I	GATC	6 cut(s)	85, 135, 180, 364, 654, 748
BspACI	CCGC	2 cut(s)	462, 767
BspANI	GGCC	1 cut(s)	671
BspCNI	CTCAG	3 cut(s)	70, 169, 398
BspPI	GGATC	2 cut(s)	372, 649
BspT104I	TTCGAA	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	3 cut(s)	290, 366, 799
BssECI	CCNNGG	5 cut(s)	196, 314, 315, 739, 759
BssMI	GATC	6 cut(s)	85, 135, 180, 364, 654, 748
BssT1I	CCWWGG	2 cut(s)	739, 759
Bst2UI	CCWGG	2 cut(s)	197, 316
Bst4CI	ACNGT	3 cut(s)	329, 439, 601
Bst6I	CTCTTC	1 cut(s)	250
BstBI	TTCGAA	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	411, 484
BstDEI	CTNAG	4 cut(s)	10, 78, 177, 385
BstF5I	GGATG	3 cut(s)	24, 112, 775
BstKTI	GATC	6 cut(s)	88, 138, 183, 367, 657, 751
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	6 cut(s)	85, 135, 180, 364, 654, 748
BstNI	CCWGG	2 cut(s)	197, 316
BstNSI	RCATGY	1 cut(s)	803
BstSCI	CCNGG	2 cut(s)	195, 314
BstSFI	CTRYAG	1 cut(s)	328
BstSLI	GKGCMC	2 cut(s)	268, 529
BstV1I	GCAGC	1 cut(s)	476
BstV2I	GAAGAC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuI	GTATCC	1 cut(s)	657
BsuRI	GGCC	1 cut(s)	671
BtrI	CACGTC	1 cut(s)	667
BtsCI	GGATG	3 cut(s)	24, 112, 775
BtsIMutI	CAGTG	2 cut(s)	145, 359
Cac8I	GCNNGC	2 cut(s)	411, 484
CaiI	CAGNNNCTG	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	670
Csp6I	GTAC	3 cut(s)	127, 578, 602
CviAII	CATG	2 cut(s)	15, 800
CviJI	RGCY	7 cut(s)	77, 174, 242, 349, 467, 613, 671
CviKI_1	RGCY	7 cut(s)	77, 174, 242, 349, 467, 613, 671
CviQI	GTAC	3 cut(s)	127, 578, 602
DdeI	CTNAG	4 cut(s)	10, 78, 177, 385
DpnI	GATC	6 cut(s)	87, 137, 182, 366, 656, 750
DpnII	GATC	6 cut(s)	85, 135, 180, 364, 654, 748
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco130I	CCWWGG	2 cut(s)	739, 759
Eco57I	CTGAAG	4 cut(s)	154, 197, 258, 690
EcoRI	GAATTC	2 cut(s)	235, 697
EcoRII	CCWGG	2 cut(s)	195, 314
EcoT14I	CCWWGG	2 cut(s)	739, 759
EcoT22I	ATGCAT	1 cut(s)	164
ErhI	CCWWGG	2 cut(s)	739, 759
FaeI	CATG	2 cut(s)	18, 803
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FatI	CATG	2 cut(s)	14, 799
Fnu4HI	GCNGC	2 cut(s)	462, 465
FokI	GGATG	3 cut(s)	31, 119, 782
Fsp4HI	GCNGC	2 cut(s)	462, 465
FspBI	CTAG	1 cut(s)	585
GluI	GCNGC	2 cut(s)	462, 465
HaeIII	GGCC	1 cut(s)	671
Hin1II	CATG	2 cut(s)	18, 803
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	3 cut(s)	35, 292, 356
Hpy166II	GTNNAC	2 cut(s)	127, 435
Hpy188I	TCNGA	3 cut(s)	178, 709, 756
Hpy188III	TCNNGA	2 cut(s)	511, 694
Hpy8I	GTNNAC	2 cut(s)	127, 435
HpyAV	CCTTC	2 cut(s)	421, 715
HpyCH4III	ACNGT	3 cut(s)	329, 439, 601
HpyCH4IV	ACGT	1 cut(s)	666
HpyCH4V	TGCA	3 cut(s)	162, 226, 482
HpyF3I	CTNAG	4 cut(s)	10, 78, 177, 385
HpySE526I	ACGT	1 cut(s)	666
Hsp92II	CATG	2 cut(s)	18, 803
Kzo9I	GATC	6 cut(s)	85, 135, 180, 364, 654, 748
LpnPI	CCDG	9 cut(s)	182, 209, 271, 301, 328, 347, 459, 599, 780
Lsp1109I	GCAGC	1 cut(s)	476
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	1 cut(s)	666
MaeIII	GTNAC	2 cut(s)	595, 802
MalI	GATC	6 cut(s)	87, 137, 182, 366, 656, 750
MboI	GATC	6 cut(s)	85, 135, 180, 364, 654, 748
MboII	GAAGA	9 cut(s)	80, 160, 203, 237, 264, 301, 692, 695, 743
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	2 cut(s)	268, 529
MluCI	AATT	6 cut(s)	23, 229, 235, 254, 567, 697
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	2 cut(s)	253, 683
Mph1103I	ATGCAT	1 cut(s)	164
MseI	TTAA	4 cut(s)	191, 378, 404, 537
MslI	CAYNNNNRTG	1 cut(s)	520
MspR9I	CCNGG	2 cut(s)	197, 316
Mva1269I	GAATGC	1 cut(s)	689
MvaI	CCWGG	2 cut(s)	197, 316
NdeII	GATC	6 cut(s)	85, 135, 180, 364, 654, 748
NlaIII	CATG	2 cut(s)	18, 803
NmuCI	GTSAC	1 cut(s)	802
NsiI	ATGCAT	1 cut(s)	164
NspI	RCATGY	1 cut(s)	803
NspV	TTCGAA	1 cut(s)	248
PasI	CCCWGGG	1 cut(s)	315
PciI	ACATGT	1 cut(s)	799
PctI	GAATGC	1 cut(s)	689
PfeI	GAWTC	2 cut(s)	292, 356
PkrI	GCNGC	2 cut(s)	463, 466
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PscI	ACATGT	1 cut(s)	799
Psp6I	CCWGG	2 cut(s)	195, 314
PspGI	CCWGG	2 cut(s)	195, 314
PspPI	GGNCC	1 cut(s)	670
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	3 cut(s)	128, 579, 603
RsaNI	GTAC	3 cut(s)	127, 578, 602
RseI	CAYNNNNRTG	1 cut(s)	520
SaqAI	TTAA	4 cut(s)	191, 378, 404, 537
SatI	GCNGC	2 cut(s)	462, 465
Sau3AI	GATC	6 cut(s)	85, 135, 180, 364, 654, 748
Sau96I	GGNCC	1 cut(s)	670
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	197, 316
SduI	GDGCHC	2 cut(s)	268, 529
SetI	ASST	7 cut(s)	79, 176, 351, 378, 432, 615, 669
SfcI	CTRYAG	1 cut(s)	328
SfuI	TTCGAA	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	520
Sse9I	AATT	6 cut(s)	23, 229, 235, 254, 567, 697
SsiI	CCGC	2 cut(s)	462, 767
SspMI	CTAG	1 cut(s)	585
StyD4I	CCNGG	2 cut(s)	195, 314
StyI	CCWWGG	2 cut(s)	739, 759
TaaI	ACNGT	3 cut(s)	329, 439, 601
TaiI	ACGT	1 cut(s)	669
TaqI	TCGA	3 cut(s)	153, 248, 510
TasI	AATT	6 cut(s)	23, 229, 235, 254, 567, 697
TatI	WGTACW	2 cut(s)	126, 577
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	2 cut(s)	292, 356
Tru1I	TTAA	4 cut(s)	191, 378, 404, 537
Tru9I	TTAA	4 cut(s)	191, 378, 404, 537
TscAI	CASTG	2 cut(s)	145, 366
TseFI	GTSAC	1 cut(s)	802
TseI	GCWGC	1 cut(s)	464
Tsp45I	GTSAC	1 cut(s)	802
TspDTI	ATGAA	1 cut(s)	35
TspRI	CASTG	2 cut(s)	145, 366
XapI	RAATTY	2 cut(s)	235, 697
XceI	RCATGY	1 cut(s)	803
XspI	CTAG	1 cut(s)	585
Zsp2I	ATGCAT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.