Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003642

Physical Location & Seq

Genomic Coordinates Forward (+)

49057175 .. 49058112

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G023330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAGTCGTCCACAGGTCCCGCATCGACCTTTCTTCCATTTTGGAAATCCTTTCCAGATGATTTCGCCGAAGGGTTCTCAAATGACTCCGAAACTTTCTGCACTGCTGAACACTTTTGAGGAAACATTGGCTGGGAGGTTGAGAAAGCTCAACCCAAAAGATAACAATGATGTCCATAGCTTGTCATGGATGAAATTGGCAATGGAGTCGCTTTGTGGAACTCGTAATGACATAAAAACTCTCATAGCTGAGATTGATCTTCCCTTGCTCGATATATGCGTTGTCTTCAGCTCTGAGATCGCACGCTTAAACCAGGGGCATTTGTTTCTTCAGTTTGTGTTGCATAATTTGAATTCAGCCTCTTCGAAGCAATTTATTTGTGCCCGTTCTTCAAACCCCAGGGTTGAGAACTGTAGCACCATTTTGGACAAGCTTGTGGAATCACTGGATCTACCAAAGGTTAAGAACTCAGCAAAAGGGAAACTTTTAATTGTCTTGACCGCAACCTTTTCTGGTTCTGCAAGCAAGTTGTTAGATTTGAATGTTGCCGAGACATATATCTGGGCACAAGCATTTAATGACTTACAGATTACGGTACTGAAAGAGATGGAAGCAGTTGATGGTATTGTGAAGCACTTGTATCCTATGATCCAAGATGACGAGGCCCTTGCAGAAGAAGAAGCATTCAAGAATTCTACTTTAGATTTAGAAAGGAACGCACAGAATCTGAAGGGAAATGTAGAAGGGCAGGTTGTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

253

Amino Acids

28.28

Weight (kDa)

6.32

Isoelectric Point (pI)

30.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46080
fragaria_vesca	FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070
malus_domestica	MD00G1111800.v1.1 MD01G1069200.v1.1
prunus_persica	Prupe.2G175300_v2.0.a1
pyrus_communis	pycom01g09860 pycom07g12990
rosa_chinensis	RchiOBHm_Chr1g0357181 RchiOBHm_Chr2g0136331 RchiOBHm_Chr2g0151201 RchiOBHm_Chr7g0201911
rosa_laevigata	RLG00000028046
rosa_multiflora	Rmu_sc0002070.1_g000062 Rmu_sc0006976.1_g000011
rosa_roxburghii	Rroxscaffold_4G00299010
rosa_rugosa	Rorug01G0254600 Rorug01G0254700 Rorug02G0231200
rosa_samantha	Rh1AG268900 Rh1BG236600 Rh1CG247100 Rh1CG252600 Rh1DG263700 Rh2AG259500 Rh5AG212900 Rh5DG553600 Rh7AG428800 Rh7CG447700
rosa_wichuraiana	Rw1G023330 Rw1G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	739
AciI	CCGC	2 cut(s)	20, 501
AclWI	GGATC	2 cut(s)	456, 643
AcsI	RAATTY	2 cut(s)	352, 691
AcuI	CTGAAG	3 cut(s)	271, 314, 749
AfaI	GTAC	1 cut(s)	597
AgsI	TTSAA	4 cut(s)	352, 393, 541, 688
AjnI	CCWGG	2 cut(s)	312, 398
AluBI	AGCT	5 cut(s)	148, 180, 248, 291, 433
AluI	AGCT	5 cut(s)	148, 180, 248, 291, 433
Alw26I	GTCTC	1 cut(s)	545
AlwI	GGATC	2 cut(s)	456, 643
AlwNI	CAGNNNCTG	1 cut(s)	727
AoxI	GGCC	1 cut(s)	663
ApoI	RAATTY	2 cut(s)	352, 691
AspS9I	GGNCC	2 cut(s)	16, 664
AsuII	TTCGAA	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	16
BaeGI	GKGCMC	2 cut(s)	385, 568
BbsI	GAAGAC	1 cut(s)	277
BccI	CCATC	2 cut(s)	601, 614
BcgI	CGANNNNNNTGC	4 cut(s)	189, 223, 650, 684
BciT130I	CCWGG	2 cut(s)	314, 400
BciVI	GTATCC	1 cut(s)	651
BcoDI	GTCTC	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	412
BfuAI	ACCTGC	1 cut(s)	739
BfuI	GTATCC	1 cut(s)	651
Bme1390I	CCNGG	2 cut(s)	314, 400
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	16, 664
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	2 cut(s)	314, 400
BmsI	GCATC	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	277
Bpu14I	TTCGAA	1 cut(s)	365
BsaJI	CCNNGG	3 cut(s)	313, 398, 399
Bse1I	ACTGG	1 cut(s)	450
Bse3DI	GCAATG	1 cut(s)	207
BseBI	CCWGG	2 cut(s)	314, 400
BseDI	CCNNGG	3 cut(s)	313, 398, 399
BseGI	GGATG	1 cut(s)	195
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	3 cut(s)	240, 285, 483
BseNI	ACTGG	1 cut(s)	450
BseSI	GKGCMC	2 cut(s)	385, 568
BseYI	CCCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	665
BslFI	GGGAC	1 cut(s)	2
BsmAI	GTCTC	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	2
BsmI	GAATGC	1 cut(s)	683
BsnI	GGCC	1 cut(s)	665
Bsp119I	TTCGAA	1 cut(s)	365
Bsp1286I	GDGCHC	2 cut(s)	385, 568
Bsp143I	GATC	4 cut(s)	256, 297, 448, 648
BspACI	CCGC	2 cut(s)	20, 501
BspANI	GGCC	1 cut(s)	665
BspCNI	CTCAG	3 cut(s)	241, 286, 482
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	739
BspPI	GGATC	2 cut(s)	456, 643
BspT104I	TTCGAA	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	450
BssECI	CCNNGG	3 cut(s)	313, 398, 399
BssMI	GATC	4 cut(s)	256, 297, 448, 648
Bst2UI	CCWGG	2 cut(s)	314, 400
Bst4CI	ACNGT	2 cut(s)	413, 595
Bst6I	CTCTTC	1 cut(s)	367
BstBI	TTCGAA	1 cut(s)	365
BstC8I	GCNNGC	2 cut(s)	304, 523
BstDEI	CTNAG	3 cut(s)	249, 294, 469
BstF5I	GGATG	1 cut(s)	195
BstKTI	GATC	4 cut(s)	259, 300, 451, 651
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	4 cut(s)	256, 297, 448, 648
BstNI	CCWGG	2 cut(s)	314, 400
BstSCI	CCNGG	2 cut(s)	312, 398
BstSFI	CTRYAG	1 cut(s)	412
BstSLI	GKGCMC	2 cut(s)	385, 568
BstV2I	GAAGAC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BsuI	GTATCC	1 cut(s)	651
BsuRI	GGCC	1 cut(s)	665
BtsCI	GGATG	1 cut(s)	195
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	2 cut(s)	101, 443
BveI	ACCTGC	1 cut(s)	739
Cac8I	GCNNGC	2 cut(s)	304, 523
CaiI	CAGNNNCTG	1 cut(s)	727
Cfr13I	GGNCC	2 cut(s)	16, 664
Csp6I	GTAC	1 cut(s)	596
CviAII	CATG	1 cut(s)	186
CviJI	RGCY	8 cut(s)	131, 148, 180, 248, 291, 359, 433, 665
CviKI_1	RGCY	8 cut(s)	131, 148, 180, 248, 291, 359, 433, 665
CviQI	GTAC	1 cut(s)	596
DdeI	CTNAG	3 cut(s)	249, 294, 469
DpnI	GATC	4 cut(s)	258, 299, 450, 650
DpnII	GATC	4 cut(s)	256, 297, 448, 648
Eam1104I	CTCTTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	3 cut(s)	271, 314, 749
EcoO109I	RGGNCCY	2 cut(s)	16, 664
EcoRI	GAATTC	2 cut(s)	352, 691
EcoRII	CCWGG	2 cut(s)	312, 398
FaeI	CATG	1 cut(s)	189
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	1 cut(s)	185
FauI	CCCGC	1 cut(s)	27
FokI	GGATG	1 cut(s)	202
GsaI	CCCAGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	665
Hin1II	CATG	1 cut(s)	189
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	5 cut(s)	4, 85, 206, 440, 724
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	3 cut(s)	90, 295, 729
Hpy188III	TCNNGA	3 cut(s)	55, 496, 688
Hpy8I	GTNNAC	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	64, 724, 737
HpyCH4III	ACNGT	2 cut(s)	413, 595
HpyCH4V	TGCA	4 cut(s)	101, 343, 521, 671
HpyF3I	CTNAG	3 cut(s)	249, 294, 469
Hsp92II	CATG	1 cut(s)	189
Kzo9I	GATC	4 cut(s)	256, 297, 448, 648
LweI	GCATC	1 cut(s)	31
MalI	GATC	4 cut(s)	258, 299, 450, 650
MboI	GATC	4 cut(s)	256, 297, 448, 648
MboII	GAAGA	8 cut(s)	25, 251, 277, 320, 354, 381, 686, 689
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	2 cut(s)	385, 568
MluCI	AATT	6 cut(s)	194, 346, 352, 371, 489, 691
MlyI	GAGTC	3 cut(s)	13, 79, 215
MnlI	CCTC	5 cut(s)	112, 129, 370, 655, 750
MseI	TTAA	4 cut(s)	308, 462, 488, 576
MspR9I	CCNGG	2 cut(s)	314, 400
Mva1269I	GAATGC	1 cut(s)	683
MvaI	CCWGG	2 cut(s)	314, 400
NdeII	GATC	4 cut(s)	256, 297, 448, 648
NlaIII	CATG	1 cut(s)	189
NlaIV	GGNNCC	1 cut(s)	18
NmeAIII	GCCGAG	1 cut(s)	574
NspV	TTCGAA	1 cut(s)	365
PasI	CCCWGGG	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PctI	GAATGC	1 cut(s)	683
PfeI	GAWTC	2 cut(s)	440, 724
PleI	GAGTC	3 cut(s)	12, 79, 214
PpsI	GAGTC	3 cut(s)	12, 79, 214
PpuMI	RGGWCCY	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	16
Psp6I	CCWGG	2 cut(s)	312, 398
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	2 cut(s)	312, 398
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	2 cut(s)	16, 664
PspPPI	RGGWCCY	1 cut(s)	16
PstNI	CAGNNNCTG	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	1 cut(s)	597
RsaNI	GTAC	1 cut(s)	596
SaqAI	TTAA	4 cut(s)	308, 462, 488, 576
Sau3AI	GATC	4 cut(s)	256, 297, 448, 648
Sau96I	GGNCC	2 cut(s)	16, 664
SchI	GAGTC	3 cut(s)	13, 79, 215
ScrFI	CCNGG	2 cut(s)	314, 400
SduI	GDGCHC	2 cut(s)	385, 568
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	1 cut(s)	412
SfuI	TTCGAA	1 cut(s)	365
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	6 cut(s)	194, 346, 352, 371, 489, 691
SsiI	CCGC	2 cut(s)	20, 501
StyD4I	CCNGG	2 cut(s)	312, 398
TaaI	ACNGT	2 cut(s)	413, 595
TaqI	TCGA	3 cut(s)	25, 270, 365
TasI	AATT	6 cut(s)	194, 346, 352, 371, 489, 691
TfiI	GAWTC	2 cut(s)	440, 724
Tru1I	TTAA	4 cut(s)	308, 462, 488, 576
Tru9I	TTAA	4 cut(s)	308, 462, 488, 576
TscAI	CASTG	2 cut(s)	108, 450
TspDTI	ATGAA	1 cut(s)	206
TspRI	CASTG	2 cut(s)	108, 450
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	2 cut(s)	352, 691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.