Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006976.1

Orthogroup ID

OG0003642

Physical Location & Seq

Genomic Coordinates Reverse (-)

72092 .. 72979

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006976.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgatgtccttagcatggatgaaattggcaatggagtcgctttgtggaactcgtaatgacgtaaaaactcttatagctgagattgatcttcccgtgagtgcttgggatgagaagtggattgatgtgtacttggagatcagtgtaaagttgctcgatatatgcattgtcttcagctctgagatcgcacgcttaaaccaggggcatttgtttcttcagtttgtgttgcataatttgaattcagcctcttcgaagcaatttattcgtgcccgttcttcagttgatgactggaagaatcatattgcttcaaagaaccccagggttgagaactgtagcaccattttggacaagcttgtggaatcactggatctaccaaaggttaagaactcagcaaaagggaaacttttaattcgcgctatgtatggagtgaaggtgttgacagtatctgtttgtagtgtctttgccgcagccttttctggttctgcaagcaagttgttagatttgaatgttgccgagacatatatgtgggcacaagcatttaatgacttacagagtaatgtaaatggggaaattagaaatgtactttctagtggtagagttacggtactgaaagagctggaagcagttgatggtattgtgaagcacttgtatcctatgatccaagatgaagtgaccctcgcagaagaagaagcattcaagaattctacttcagatttagaaaggaaggcacataatctttcccaaggacttgatcttctgactaaggaagtggatgtgtttttccaaatccttttgactggacgcgaagccttgctttctaagctgagatcaggtggagcagtctctgaccggatgctgatgggaaatgtagaagggcaggttgtgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

295

Amino Acids

32.79

Weight (kDa)

6.01

Isoelectric Point (pI)

28.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46080
fragaria_vesca	FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070
malus_domestica	MD00G1111800.v1.1 MD01G1069200.v1.1
prunus_persica	Prupe.2G175300_v2.0.a1
pyrus_communis	pycom01g09860 pycom07g12990
rosa_chinensis	RchiOBHm_Chr1g0357181 RchiOBHm_Chr2g0136331 RchiOBHm_Chr2g0151201 RchiOBHm_Chr7g0201911
rosa_laevigata	RLG00000028046
rosa_multiflora	Rmu_sc0002070.1_g000062 Rmu_sc0006976.1_g000011
rosa_roxburghii	Rroxscaffold_4G00299010
rosa_rugosa	Rorug01G0254600 Rorug01G0254700 Rorug02G0231200
rosa_samantha	Rh1AG268900 Rh1BG236600 Rh1CG247100 Rh1CG252600 Rh1DG263700 Rh2AG259500 Rh5AG212900 Rh5DG553600 Rh7AG428800 Rh7CG447700
rosa_wichuraiana	Rw1G023330 Rw1G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	865
AccII	CGCG	2 cut(s)	411, 801
AciI	CCGC	1 cut(s)	462
AclWI	GGATC	2 cut(s)	372, 649
AcsI	RAATTY	2 cut(s)	235, 697
AcuI	CTGAAG	4 cut(s)	154, 197, 258, 690
AfaI	GTAC	3 cut(s)	128, 579, 603
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgsI	TTSAA	4 cut(s)	235, 306, 502, 694
AjnI	CCWGG	2 cut(s)	195, 314
AluBI	AGCT	5 cut(s)	77, 174, 349, 613, 820
AluI	AGCT	5 cut(s)	77, 174, 349, 613, 820
Alw26I	GTCTC	2 cut(s)	506, 844
AlwI	GGATC	2 cut(s)	372, 649
AlwNI	CAGNNNCTG	2 cut(s)	443, 842
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	2 cut(s)	235, 697
AspLEI	GCGC	1 cut(s)	413
AsuII	TTCGAA	1 cut(s)	248
BaeGI	GKGCMC	2 cut(s)	268, 529
BbsI	GAAGAC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	476
BccI	CCATC	2 cut(s)	620, 850
BcgI	CGANNNNNNTGC	4 cut(s)	18, 52, 242, 276
BciT130I	CCWGG	2 cut(s)	197, 316
BciVI	GTATCC	1 cut(s)	657
BcoDI	GTCTC	2 cut(s)	506, 844
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	1 cut(s)	328
BfuAI	ACCTGC	1 cut(s)	865
BfuI	GTATCC	1 cut(s)	657
BisI	GCNGC	2 cut(s)	462, 465
BlsI	GCNGC	2 cut(s)	463, 466
Bme1390I	CCNGG	2 cut(s)	197, 316
BmrFI	CCNGG	2 cut(s)	197, 316
BmsI	GCATC	1 cut(s)	840
BpiI	GAAGAC	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	10
Bpu14I	TTCGAA	1 cut(s)	248
BsaJI	CCNNGG	4 cut(s)	196, 314, 315, 739
BsaWI	WCCGGW	1 cut(s)	846
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse1I	ACTGG	3 cut(s)	290, 366, 799
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	197, 316
BseDI	CCNNGG	4 cut(s)	196, 314, 315, 739
BseGI	GGATG	4 cut(s)	24, 112, 775, 855
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	4 cut(s)	69, 168, 399, 812
BseNI	ACTGG	3 cut(s)	290, 366, 799
BseSI	GKGCMC	2 cut(s)	268, 529
BseXI	GCAGC	1 cut(s)	476
Bsh1236I	CGCG	2 cut(s)	411, 801
BsiSI	CCGG	1 cut(s)	847
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	2 cut(s)	506, 844
BsmI	GAATGC	1 cut(s)	689
Bsp119I	TTCGAA	1 cut(s)	248
Bsp1286I	GDGCHC	2 cut(s)	268, 529
Bsp143I	GATC	7 cut(s)	85, 135, 180, 364, 654, 748, 824
BspACI	CCGC	1 cut(s)	462
BspCNI	CTCAG	4 cut(s)	70, 169, 398, 813
BspFNI	CGCG	2 cut(s)	411, 801
BspMI	ACCTGC	1 cut(s)	865
BspPI	GGATC	2 cut(s)	372, 649
BspT104I	TTCGAA	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	3 cut(s)	290, 366, 799
BssECI	CCNNGG	4 cut(s)	196, 314, 315, 739
BssMI	GATC	7 cut(s)	85, 135, 180, 364, 654, 748, 824
BssT1I	CCWWGG	1 cut(s)	739
Bst2UI	CCWGG	2 cut(s)	197, 316
Bst4CI	ACNGT	3 cut(s)	329, 439, 601
Bst6I	CTCTTC	1 cut(s)	250
BstBI	TTCGAA	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	187, 484
BstDEI	CTNAG	7 cut(s)	10, 78, 177, 385, 759, 816, 821
BstF5I	GGATG	4 cut(s)	24, 112, 775, 855
BstFNI	CGCG	2 cut(s)	411, 801
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	7 cut(s)	88, 138, 183, 367, 657, 751, 827
BstMAI	GTCTC	2 cut(s)	506, 844
BstMBI	GATC	7 cut(s)	85, 135, 180, 364, 654, 748, 824
BstMWI	GCNNNNNNNGC	1 cut(s)	817
BstNI	CCWGG	2 cut(s)	197, 316
BstSCI	CCNGG	2 cut(s)	195, 314
BstSFI	CTRYAG	1 cut(s)	328
BstSLI	GKGCMC	2 cut(s)	268, 529
BstUI	CGCG	2 cut(s)	411, 801
BstV1I	GCAGC	1 cut(s)	476
BstV2I	GAAGAC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuI	GTATCC	1 cut(s)	657
BtsCI	GGATG	4 cut(s)	24, 112, 775, 855
BtsIMutI	CAGTG	2 cut(s)	145, 359
BveI	ACCTGC	1 cut(s)	865
Cac8I	GCNNGC	2 cut(s)	187, 484
CaiI	CAGNNNCTG	2 cut(s)	443, 842
CfoI	GCGC	1 cut(s)	413
CseI	GACGC	1 cut(s)	807
Csp6I	GTAC	3 cut(s)	127, 578, 602
CviAII	CATG	1 cut(s)	15
CviJI	RGCY	8 cut(s)	77, 174, 242, 349, 467, 613, 806, 820
CviKI_1	RGCY	8 cut(s)	77, 174, 242, 349, 467, 613, 806, 820
CviQI	GTAC	3 cut(s)	127, 578, 602
DdeI	CTNAG	7 cut(s)	10, 78, 177, 385, 759, 816, 821
DpnI	GATC	7 cut(s)	87, 137, 182, 366, 656, 750, 826
DpnII	GATC	7 cut(s)	85, 135, 180, 364, 654, 748, 824
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	739
Eco57I	CTGAAG	4 cut(s)	154, 197, 258, 690
EcoRI	GAATTC	2 cut(s)	235, 697
EcoRII	CCWGG	2 cut(s)	195, 314
EcoT14I	CCWWGG	1 cut(s)	739
EcoT22I	ATGCAT	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	739
FaeI	CATG	1 cut(s)	18
FalI	AAGNNNNNCTT	4 cut(s)	384, 416, 795, 827
FatI	CATG	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	462, 465
FokI	GGATG	4 cut(s)	31, 119, 782, 862
Fsp4HI	GCNGC	2 cut(s)	462, 465
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	2 cut(s)	462, 465
HapII	CCGG	1 cut(s)	847
HgaI	GACGC	1 cut(s)	807
HhaI	GCGC	1 cut(s)	413
Hin1II	CATG	1 cut(s)	18
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	3 cut(s)	35, 292, 356
HpaII	CCGG	1 cut(s)	847
Hpy166II	GTNNAC	2 cut(s)	127, 435
Hpy188I	TCNGA	4 cut(s)	178, 709, 756, 844
Hpy188III	TCNNGA	1 cut(s)	694
Hpy8I	GTNNAC	2 cut(s)	127, 435
HpyAV	CCTTC	3 cut(s)	421, 715, 863
HpyCH4III	ACNGT	3 cut(s)	329, 439, 601
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	3 cut(s)	162, 226, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	817
HpyF3I	CTNAG	7 cut(s)	10, 78, 177, 385, 759, 816, 821
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	18
HspAI	GCGC	1 cut(s)	411
Kzo9I	GATC	7 cut(s)	85, 135, 180, 364, 654, 748, 824
LmnI	GCTCC	1 cut(s)	833
Lsp1109I	GCAGC	1 cut(s)	476
LweI	GCATC	1 cut(s)	840
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	2 cut(s)	595, 667
MalI	GATC	7 cut(s)	87, 137, 182, 366, 656, 750, 826
MboI	GATC	7 cut(s)	85, 135, 180, 364, 654, 748, 824
MboII	GAAGA	9 cut(s)	80, 160, 203, 237, 264, 301, 692, 695, 743
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	2 cut(s)	268, 529
MluCI	AATT	7 cut(s)	23, 229, 235, 254, 405, 567, 697
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	3 cut(s)	253, 683, 876
Mph1103I	ATGCAT	1 cut(s)	164
MseI	TTAA	4 cut(s)	191, 378, 404, 537
MslI	CAYNNNNRTG	1 cut(s)	520
MspI	CCGG	1 cut(s)	847
MspR9I	CCNGG	2 cut(s)	197, 316
Mva1269I	GAATGC	1 cut(s)	689
MvaI	CCWGG	2 cut(s)	197, 316
MvnI	CGCG	2 cut(s)	411, 801
MwoI	GCNNNNNNNGC	1 cut(s)	817
NdeII	GATC	7 cut(s)	85, 135, 180, 364, 654, 748, 824
NlaIII	CATG	1 cut(s)	18
NmeAIII	GCCGAG	1 cut(s)	535
NmuCI	GTSAC	1 cut(s)	667
NsiI	ATGCAT	1 cut(s)	164
NspV	TTCGAA	1 cut(s)	248
PasI	CCCWGGG	1 cut(s)	315
PctI	GAATGC	1 cut(s)	689
PfeI	GAWTC	2 cut(s)	292, 356
PkrI	GCNGC	2 cut(s)	463, 466
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp6I	CCWGG	2 cut(s)	195, 314
PspGI	CCWGG	2 cut(s)	195, 314
PstNI	CAGNNNCTG	2 cut(s)	443, 842
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	3 cut(s)	128, 579, 603
RsaNI	GTAC	3 cut(s)	127, 578, 602
RseI	CAYNNNNRTG	1 cut(s)	520
SaqAI	TTAA	4 cut(s)	191, 378, 404, 537
SatI	GCNGC	2 cut(s)	462, 465
Sau3AI	GATC	7 cut(s)	85, 135, 180, 364, 654, 748, 824
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	197, 316
SduI	GDGCHC	2 cut(s)	268, 529
SfaNI	GCATC	1 cut(s)	840
SfcI	CTRYAG	1 cut(s)	328
SfuI	TTCGAA	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	520
Sse9I	AATT	7 cut(s)	23, 229, 235, 254, 405, 567, 697
SsiI	CCGC	1 cut(s)	462
SspMI	CTAG	1 cut(s)	585
StyD4I	CCNGG	2 cut(s)	195, 314
StyI	CCWWGG	1 cut(s)	739
TaaI	ACNGT	3 cut(s)	329, 439, 601
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	153, 248
TasI	AATT	7 cut(s)	23, 229, 235, 254, 405, 567, 697
TatI	WGTACW	2 cut(s)	126, 577
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	2 cut(s)	292, 356
Tru1I	TTAA	4 cut(s)	191, 378, 404, 537
Tru9I	TTAA	4 cut(s)	191, 378, 404, 537
TscAI	CASTG	2 cut(s)	145, 366
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	1 cut(s)	464
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	2 cut(s)	35, 678
TspRI	CASTG	2 cut(s)	145, 366
XapI	RAATTY	2 cut(s)	235, 697
XspI	CTAG	1 cut(s)	585
Zsp2I	ATGCAT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.