Rh1CG247100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003642
Physical Location & Seq
Reverse (-)
50914229 .. 50917250
3022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG247100.1

Sequence Viewer

Length: 807 bp
ATGAAGAGCAAAGGATGCAACCCAAATGTATTCAATTACTCAGATATGATGAATGGATTCTGTAAGGAGGAAAGATTGGAGGAGACCAAGGAGCTTTTGGATGAAATGAAGAGCTTTGGTATCAAACCAGATACAGTTGTCTACACTACTTTAATTGATTGCTACTGTAGGACTGGGAGAGTTGACGAAGCGATAGAGTTGCTCAAAGAGATGAAAGAAAGACGGTGCAAAGCTGATACTGTGACTTTCAATGTGATACTTGGAGGATTATGTAGAGAAGGCAGAATTGAGGATGCGCTTGAGATGCTAGACAAACTTCCTTATGAGGGTATCTATCTGAATAAGGGAAGCTACAGGATTGTGTTGAATTCCTTGTGTCAGAAAGGTGAACTAAACAAAGCTAAAGAGTTGTTGAGATTGATGATGGGTAGGGGGTTTGTACCACATTATGCAACTGCAAACGAGTTGCTAGTTAGCCTTTGTGAGGCTGGAATGGCAGATGATGCAACTATGGTTAACACCAAGAGCCATGCCGTAATGATTTGCGTGACAAGCTCAAGATCAAAAAGTCTGATAGAGATATATGTCTCGGCAACATTCAAATCTAACAACTTGCTTGCAGAACCAGAAAAGGTTGCGGTCAAGACACTACAAACAGATACTGTCAACACCTTCACTCCATACATAGCTCACATTAAAAGTTTCCCTTTTGCTGAGTTCTTAACCTTTGGTAGATCCAGTGATTCCACAAGCTTGTCCAAAATGGTGCTACAGTTCTCAACCCTGGGGTTCTTTGAAGTAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

30.15

Weight (kDa)

6.04

Isoelectric Point (pI)

31.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 4 - 37 1.7e-09 PPR repeat
TPR_24 PF23276 5 - 102 6.8e-08 Fungal tetratrico peptide repeats
PPR_2 PF13041 8 - 53 6.3e-12 PPR repeat family
PPR PF01535 13 - 41 5.9e-06 PPR repeat
PPR_long PF17177 26 - 134 2.3e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 32 - 88 2.8e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 40 - 72 1.1e-15 PPR repeat
PPR_2 PF13041 43 - 92 1e-19 PPR repeat family
PPR PF01535 46 - 76 1.2e-11 PPR repeat
PPR_1 PF12854 75 - 105 3.8e-10 PPR repeat
PPR_2 PF13041 79 - 127 1.9e-11 PPR repeat family
PPR PF01535 81 - 111 6.3e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 141
AciI CCGC 1 cut(s) 638
AclWI GGATC 1 cut(s) 729
AcsI RAATTY 1 cut(s) 367
AfaI GTAC 1 cut(s) 441
AfiI CCNNNNNNNGG 2 cut(s) 326, 484
AgsI TTSAA 5 cut(s) 34, 250, 367, 601, 797
AjnI CCWGG 1 cut(s) 783
AluBI AGCT 8 cut(s) 94, 114, 233, 351, 401, 555, 689, 753
AluI AGCT 8 cut(s) 94, 114, 233, 351, 401, 555, 689, 753
Alw26I GTCTC 2 cut(s) 77, 592
AlwI GGATC 1 cut(s) 729
AlwNI CAGNNNCTG 1 cut(s) 662
ApoI RAATTY 1 cut(s) 367
Asp700I GAANNNNTTC 1 cut(s) 56
AspLEI GCGC 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 398
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BccI CCATC 1 cut(s) 418
BceAI ACGGC 1 cut(s) 518
BcgI CGANNNNNNTGC 2 cut(s) 181, 215
BciT130I CCWGG 1 cut(s) 785
BcoDI GTCTC 2 cut(s) 77, 592
BfaI CTAG 2 cut(s) 308, 470
BfmI CTRYAG 3 cut(s) 166, 352, 770
Bme1390I CCNGG 1 cut(s) 785
BmrFI CCNGG 1 cut(s) 785
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 4 cut(s) 5, 283, 294, 493
BmuI ACTGGG 1 cut(s) 183
BpuEI CTTGAG 2 cut(s) 320, 541
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 3 cut(s) 87, 783, 784
BsaXI ACNNNNNCTCC 2 cut(s) 661, 691
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 484
Bse1I ACTGG 2 cut(s) 178, 738
BseBI CCWGG 1 cut(s) 785
BseDI CCNNGG 3 cut(s) 87, 783, 784
BseGI GGATG 3 cut(s) 20, 106, 298
BseLI CCNNNNNNNGG 2 cut(s) 326, 484
BseMII CTCAG 2 cut(s) 54, 705
BseNI ACTGG 2 cut(s) 178, 738
BseRI GAGGAG 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 326, 484
BsmAI GTCTC 2 cut(s) 77, 592
Bso31I GGTCTC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 560, 734
BspACI CCGC 1 cut(s) 638
BspCNI CTCAG 2 cut(s) 53, 706
BspPI GGATC 1 cut(s) 729
BspQI GCTCTTC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 77
BsrI ACTGG 2 cut(s) 178, 738
BssECI CCNNGG 3 cut(s) 87, 783, 784
BssMI GATC 2 cut(s) 560, 734
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 785
Bst4CI ACNGT 6 cut(s) 136, 167, 225, 241, 664, 774
Bst6I CTCTTC 1 cut(s) 104
BstAPI GCANNNNNTGC 2 cut(s) 15, 503
BstC8I GCNNGC 1 cut(s) 618
BstDEI CTNAG 2 cut(s) 40, 714
BstENI CCTNNNNNAGG 1 cut(s) 482
BstF5I GGATG 3 cut(s) 20, 106, 298
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 2 cut(s) 563, 737
BstMAI GTCTC 2 cut(s) 77, 592
BstMBI GATC 2 cut(s) 560, 734
BstMWI GCNNNNNNNGC 5 cut(s) 15, 304, 494, 503, 552
BstNI CCWGG 1 cut(s) 785
BstSCI CCNGG 1 cut(s) 783
BstSFI CTRYAG 3 cut(s) 166, 352, 770
BstX2I RGATCY 1 cut(s) 734
BstYI RGATCY 1 cut(s) 734
BtsCI GGATG 3 cut(s) 20, 106, 298
BtsIMutI CAGTG 1 cut(s) 745
Cac8I GCNNGC 1 cut(s) 618
CaiI CAGNNNCTG 1 cut(s) 662
CfoI GCGC 1 cut(s) 298
Csp6I GTAC 1 cut(s) 440
CviAII CATG 1 cut(s) 530
CviQI GTAC 1 cut(s) 440
DdeI CTNAG 2 cut(s) 40, 714
DpnI GATC 2 cut(s) 562, 736
DpnII GATC 2 cut(s) 560, 734
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 77
EcoNI CCTNNNNNAGG 1 cut(s) 482
EcoRI GAATTC 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 783
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 1 cut(s) 533
FalI AAGNNNNNCTT 2 cut(s) 691, 723
FatI CATG 1 cut(s) 529
FblI GTMKAC 1 cut(s) 141
FokI GGATG 3 cut(s) 27, 113, 305
FspBI CTAG 2 cut(s) 308, 470
GlaI GCGC 1 cut(s) 297
HhaI GCGC 1 cut(s) 298
Hin1II CATG 1 cut(s) 533
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HincII GTYRAC 3 cut(s) 184, 517, 667
HindII GTYRAC 3 cut(s) 184, 517, 667
HindIII AAGCTT 1 cut(s) 751
HinfI GANTC 2 cut(s) 57, 743
HpaI GTTAAC 1 cut(s) 517
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 5 cut(s) 142, 184, 389, 517, 667
Hpy188I TCNGA 4 cut(s) 43, 339, 381, 573
Hpy188III TCNNGA 2 cut(s) 558, 643
Hpy8I GTNNAC 5 cut(s) 142, 184, 389, 517, 667
HpyAV CCTTC 2 cut(s) 272, 682
HpyCH4III ACNGT 6 cut(s) 136, 167, 225, 241, 664, 774
HpyCH4V TGCA 6 cut(s) 18, 228, 452, 458, 506, 620
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 304, 494, 503, 552
HpyF3I CTNAG 2 cut(s) 40, 714
Hsp92II CATG 1 cut(s) 533
HspAI GCGC 1 cut(s) 296
KspAI GTTAAC 1 cut(s) 517
Kzo9I GATC 2 cut(s) 560, 734
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 8 cut(s) 141, 159, 340, 474, 639, 751, 770, 797
LweI GCATC 4 cut(s) 5, 283, 294, 493
MaeI CTAG 2 cut(s) 308, 470
MaeIII GTNAC 2 cut(s) 241, 547
MalI GATC 2 cut(s) 562, 736
MboI GATC 2 cut(s) 560, 734
MboII GAAGA 2 cut(s) 16, 121
MflI RGATCY 1 cut(s) 734
MluCI AATT 4 cut(s) 34, 153, 285, 367
MnlI CCTC 6 cut(s) 61, 73, 257, 283, 319, 478
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 4 cut(s) 152, 516, 696, 722
MspR9I CCNGG 1 cut(s) 785
MvaI CCWGG 1 cut(s) 785
MwoI GCNNNNNNNGC 5 cut(s) 15, 304, 494, 503, 552
NdeII GATC 2 cut(s) 560, 734
NlaIII CATG 1 cut(s) 533
NmeAIII GCCGAG 1 cut(s) 569
NmuCI GTSAC 2 cut(s) 241, 547
PasI CCCWGGG 1 cut(s) 784
PciSI GCTCTTC 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 2 cut(s) 57, 743
Psp6I CCWGG 1 cut(s) 783
PspGI CCWGG 1 cut(s) 783
PstNI CAGNNNCTG 1 cut(s) 662
PsuI RGATCY 1 cut(s) 734
RsaI GTAC 1 cut(s) 441
RsaNI GTAC 1 cut(s) 440
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 4 cut(s) 152, 516, 696, 722
Sau3AI GATC 2 cut(s) 560, 734
ScrFI CCNGG 1 cut(s) 785
SfaNI GCATC 4 cut(s) 5, 283, 294, 493
SfcI CTRYAG 3 cut(s) 166, 352, 770
SmlI CTYRAG 2 cut(s) 299, 556
SmoI CTYRAG 2 cut(s) 299, 556
Sse9I AATT 4 cut(s) 34, 153, 285, 367
SsiI CCGC 1 cut(s) 638
SspMI CTAG 2 cut(s) 308, 470
StyD4I CCNGG 1 cut(s) 783
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 6 cut(s) 136, 167, 225, 241, 664, 774
TasI AATT 4 cut(s) 34, 153, 285, 367
TfiI GAWTC 2 cut(s) 57, 743
Tru1I TTAA 4 cut(s) 152, 516, 696, 722
Tru9I TTAA 4 cut(s) 152, 516, 696, 722
TscAI CASTG 1 cut(s) 745
TseFI GTSAC 2 cut(s) 241, 547
Tsp45I GTSAC 2 cut(s) 241, 547
TspDTI ATGAA 5 cut(s) 17, 65, 117, 122, 227
TspRI CASTG 1 cut(s) 745
XagI CCTNNNNNAGG 1 cut(s) 482
XapI RAATTY 1 cut(s) 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 2 cut(s) 308, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.