Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003642

Physical Location & Seq

Genomic Coordinates Forward (+)

18058243 .. 18059301

Gene Structure 1059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028046

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGAGTCGTCCACAGGTCCCGCACCGACCTTTCTTCCATTTTGGAAATCCTTTCCGGATGATTTCGCCAAAGGGTTCTCAAATGACTCCGAACCTTTCTGCACTGCTGAGCACTTTTGAGGAAACATTGGCTGGGAGGTTGAGAAAGCTCAACCCAAAAGATAACAATGATGTCCTTAGCTTGTCATGGATGAAATTGGCAATGGAGTCGCTTTGTGGAACACATAATGACATAAAAACTCTCATAGCTGAGATTGATCTCCCCGTGAGTGCCTGGGATGAGAAGTGGATTGATGTGTACTTGGACATCAGTGTAAAGTTGCTCGATATATGCATTGTCTTCAGCTCTGAGATCGCACGCTTGAACCAGGGGCATTTGTTTCTTCAGTTTGTGTTGCATAATTTGAATTCAGCCTCTGCAGAGCACTTTATTCGTGCGCGTTCTTCAGTTGATGACTGGAAGAATCATGTTGCTTCAAAGAACCCCAGGGTTGAGAACTGTAGCACCATTTTGGACAAGCTTGTGGAATCACTGGATCTACCAAAGGTTAAGAACTCAGCAAAAGGGAAACTTTTAATGCGTGCTATGTATGGAGTGAAGGTGTTGACAGTATCTGTTTGTAGTGTTTTTGCCGCAGCCTTTTCTGGTTCTGCAAGCAAGTTGTTAGATTTGAATGTTGCCGAGACATATATGTGGGCACAAGCATTTAATGACTTACAGAGTAATGTAAATGGGGAAATTAGAAATGTACTTTCTAGTGGTAGAGTTACAGTACTGAAAGAGCTGGAAGCAGTTGATGGTATTGTGAAGCACTTGTATCCTATGATCCAAGATGGCGTGGCCCTCGCAGAAGAAGAAGCATTCAAGAATTCTACTTCAGATTTAGAAAGGAAGGCACAGAATCTTTCCCAAGGACTTGATCTTCTGACCAAGGAAGTGGATGGGTTTTTCCAAATCCTTTTGACTGGACGCGATGCCTTGCTTTCTAAGCTGAGATCAGGTGGAGCAGTCTCTGACCGGATGCTGATGGGAAATGTAGAAGGGCAGGTTGTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

353

Amino Acids

39.08

Weight (kDa)

6.72

Isoelectric Point (pI)

28.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ROH1-like	PF05633	36 - 138	3.3e-06	Protein ROH1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46080
fragaria_vesca	FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070
malus_domestica	MD00G1111800.v1.1 MD01G1069200.v1.1
prunus_persica	Prupe.2G175300_v2.0.a1
pyrus_communis	pycom01g09860 pycom07g12990
rosa_chinensis	RchiOBHm_Chr1g0357181 RchiOBHm_Chr2g0136331 RchiOBHm_Chr2g0151201 RchiOBHm_Chr7g0201911
rosa_laevigata	RLG00000028046
rosa_multiflora	Rmu_sc0002070.1_g000062 Rmu_sc0006976.1_g000011
rosa_roxburghii	Rroxscaffold_4G00299010
rosa_rugosa	Rorug01G0254600 Rorug01G0254700 Rorug02G0231200
rosa_samantha	Rh1AG268900 Rh1BG236600 Rh1CG247100 Rh1CG252600 Rh1DG263700 Rh2AG259500 Rh5AG212900 Rh5DG553600 Rh7AG428800 Rh7CG447700
rosa_wichuraiana	Rw1G023330 Rw1G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1036
AccII	CGCG	2 cut(s)	439, 972
AccIII	TCCGGA	1 cut(s)	54
AciI	CCGC	2 cut(s)	20, 633
AclWI	GGATC	2 cut(s)	543, 820
AcsI	RAATTY	2 cut(s)	406, 868
AcuI	CTGAAG	4 cut(s)	325, 368, 429, 861
AfaI	GTAC	3 cut(s)	299, 750, 774
AgsI	TTSAA	5 cut(s)	364, 406, 477, 673, 865
AjnI	CCWGG	3 cut(s)	272, 366, 485
AluBI	AGCT	7 cut(s)	148, 180, 248, 345, 520, 784, 991
AluI	AGCT	7 cut(s)	148, 180, 248, 345, 520, 784, 991
Alw21I	GWGCWC	2 cut(s)	113, 426
Alw26I	GTCTC	2 cut(s)	677, 1015
AlwI	GGATC	2 cut(s)	543, 820
AlwNI	CAGNNNCTG	3 cut(s)	416, 614, 1013
Aor13HI	TCCGGA	1 cut(s)	54
AoxI	GGCC	1 cut(s)	840
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	2 cut(s)	406, 868
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	2 cut(s)	16, 841
AvaII	GGWCC	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	700
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	2 cut(s)	113, 426
BbvI	GCAGC	1 cut(s)	647
BccI	CCATC	4 cut(s)	791, 827, 935, 1021
BcgI	CGANNNNNNTGC	4 cut(s)	189, 223, 413, 447
BciT130I	CCWGG	3 cut(s)	274, 368, 487
BciVI	GTATCC	1 cut(s)	828
BcoDI	GTCTC	2 cut(s)	677, 1015
BfaI	CTAG	1 cut(s)	756
BfmI	CTRYAG	2 cut(s)	417, 499
BfuAI	ACCTGC	1 cut(s)	1036
BfuI	GTATCC	1 cut(s)	828
BisI	GCNGC	2 cut(s)	633, 636
BlpI	GCTNAGC	1 cut(s)	107
BlsI	GCNGC	2 cut(s)	634, 637
BmcAI	AGTACT	1 cut(s)	774
Bme1390I	CCNGG	3 cut(s)	274, 368, 487
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	16, 841
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	3 cut(s)	274, 368, 487
BmsI	GCATC	2 cut(s)	964, 1011
BpiI	GAAGAC	1 cut(s)	331
Bpu10I	CCTNAGC	1 cut(s)	176
Bpu1102I	GCTNAGC	1 cut(s)	107
BsaJI	CCNNGG	6 cut(s)	273, 367, 485, 486, 910, 930
BsaWI	WCCGGW	2 cut(s)	54, 1017
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bse1I	ACTGG	3 cut(s)	461, 537, 970
Bse3DI	GCAATG	1 cut(s)	207
BseAI	TCCGGA	1 cut(s)	54
BseBI	CCWGG	3 cut(s)	274, 368, 487
BseDI	CCNNGG	6 cut(s)	273, 367, 485, 486, 910, 930
BseGI	GGATG	5 cut(s)	63, 195, 283, 946, 1026
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	5 cut(s)	98, 240, 339, 570, 983
BseNI	ACTGG	3 cut(s)	461, 537, 970
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	1 cut(s)	647
BseYI	CCCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	84
Bsh1236I	CGCG	2 cut(s)	439, 972
BshFI	GGCC	1 cut(s)	842
BsiHKAI	GWGCWC	2 cut(s)	113, 426
BsiSI	CCGG	2 cut(s)	55, 1018
BslFI	GGGAC	1 cut(s)	2
BsmAI	GTCTC	2 cut(s)	677, 1015
BsmFI	GGGAC	1 cut(s)	2
BsmI	GAATGC	1 cut(s)	860
BsnI	GGCC	1 cut(s)	842
Bsp1286I	GDGCHC	3 cut(s)	113, 426, 700
Bsp13I	TCCGGA	1 cut(s)	54
Bsp143I	GATC	6 cut(s)	256, 351, 535, 825, 919, 995
Bsp1720I	GCTNAGC	1 cut(s)	107
BspACI	CCGC	2 cut(s)	20, 633
BspANI	GGCC	1 cut(s)	842
BspCNI	CTCAG	5 cut(s)	99, 241, 340, 569, 984
BspEI	TCCGGA	1 cut(s)	54
BspFNI	CGCG	2 cut(s)	439, 972
BspLI	GGNNCC	1 cut(s)	18
BspMAI	CTGCAG	1 cut(s)	421
BspMI	ACCTGC	1 cut(s)	1036
BspPI	GGATC	2 cut(s)	543, 820
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	3 cut(s)	461, 537, 970
BssECI	CCNNGG	6 cut(s)	273, 367, 485, 486, 910, 930
BssMI	GATC	6 cut(s)	256, 351, 535, 825, 919, 995
BssT1I	CCWWGG	2 cut(s)	910, 930
Bst2UI	CCWGG	3 cut(s)	274, 368, 487
Bst4CI	ACNGT	3 cut(s)	500, 610, 772
BstC8I	GCNNGC	3 cut(s)	358, 582, 655
BstDEI	CTNAG	7 cut(s)	107, 176, 249, 348, 556, 987, 992
BstF5I	GGATG	5 cut(s)	63, 195, 283, 946, 1026
BstFNI	CGCG	2 cut(s)	439, 972
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	6 cut(s)	259, 354, 538, 828, 922, 998
BstMAI	GTCTC	2 cut(s)	677, 1015
BstMBI	GATC	6 cut(s)	256, 351, 535, 825, 919, 995
BstMWI	GCNNNNNNNGC	1 cut(s)	988
BstNI	CCWGG	3 cut(s)	274, 368, 487
BstSCI	CCNGG	3 cut(s)	272, 366, 485
BstSFI	CTRYAG	2 cut(s)	417, 499
BstSLI	GKGCMC	1 cut(s)	700
BstUI	CGCG	2 cut(s)	439, 972
BstV1I	GCAGC	1 cut(s)	647
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	535
BstXI	CCANNNNNNTGG	1 cut(s)	937
BstYI	RGATCY	1 cut(s)	535
BsuI	GTATCC	1 cut(s)	828
BsuRI	GGCC	1 cut(s)	842
BtgZI	GCGATG	1 cut(s)	987
BtsCI	GGATG	5 cut(s)	63, 195, 283, 946, 1026
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	3 cut(s)	101, 316, 530
BveI	ACCTGC	1 cut(s)	1036
Cac8I	GCNNGC	3 cut(s)	358, 582, 655
CaiI	CAGNNNCTG	3 cut(s)	416, 614, 1013
CfoI	GCGC	1 cut(s)	439
Cfr13I	GGNCC	2 cut(s)	16, 841
CseI	GACGC	1 cut(s)	978
Csp6I	GTAC	3 cut(s)	298, 749, 773
CviAII	CATG	2 cut(s)	186, 467
CviQI	GTAC	3 cut(s)	298, 749, 773
DdeI	CTNAG	7 cut(s)	107, 176, 249, 348, 556, 987, 992
DpnI	GATC	6 cut(s)	258, 353, 537, 827, 921, 997
DpnII	GATC	6 cut(s)	256, 351, 535, 825, 919, 995
Eco130I	CCWWGG	2 cut(s)	910, 930
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	4 cut(s)	325, 368, 429, 861
EcoO109I	RGGNCCY	1 cut(s)	16
EcoRI	GAATTC	2 cut(s)	406, 868
EcoRII	CCWGG	3 cut(s)	272, 366, 485
EcoT14I	CCWWGG	2 cut(s)	910, 930
EcoT22I	ATGCAT	1 cut(s)	335
ErhI	CCWWGG	2 cut(s)	910, 930
FaeI	CATG	2 cut(s)	189, 470
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	2 cut(s)	185, 466
FauI	CCCGC	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	633, 636
FokI	GGATG	5 cut(s)	70, 202, 290, 953, 1033
Fsp4HI	GCNGC	2 cut(s)	633, 636
FspBI	CTAG	1 cut(s)	756
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	2 cut(s)	633, 636
GsaI	CCCAGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	842
HapII	CCGG	2 cut(s)	55, 1018
HgaI	GACGC	1 cut(s)	978
HhaI	GCGC	1 cut(s)	439
Hin1II	CATG	2 cut(s)	189, 470
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	6 cut(s)	4, 85, 206, 463, 527, 901
HpaII	CCGG	2 cut(s)	55, 1018
Hpy166II	GTNNAC	3 cut(s)	11, 298, 606
Hpy188I	TCNGA	5 cut(s)	90, 349, 880, 927, 1015
Hpy188III	TCNNGA	2 cut(s)	55, 865
Hpy8I	GTNNAC	3 cut(s)	11, 298, 606
HpyAV	CCTTC	3 cut(s)	592, 886, 1034
HpyCH4III	ACNGT	3 cut(s)	500, 610, 772
HpyCH4V	TGCA	5 cut(s)	101, 333, 397, 419, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	988
HpyF3I	CTNAG	7 cut(s)	107, 176, 249, 348, 556, 987, 992
Hsp92II	CATG	2 cut(s)	189, 470
HspAI	GCGC	1 cut(s)	437
Kpn2I	TCCGGA	1 cut(s)	54
Kzo9I	GATC	6 cut(s)	256, 351, 535, 825, 919, 995
LmnI	GCTCC	1 cut(s)	1004
Lsp1109I	GCAGC	1 cut(s)	647
LweI	GCATC	2 cut(s)	964, 1011
MaeI	CTAG	1 cut(s)	756
MaeIII	GTNAC	1 cut(s)	766
MalI	GATC	6 cut(s)	258, 353, 537, 827, 921, 997
MboI	GATC	6 cut(s)	256, 351, 535, 825, 919, 995
MboII	GAAGA	8 cut(s)	25, 331, 374, 435, 472, 863, 866, 914
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	3 cut(s)	113, 426, 700
MluCI	AATT	5 cut(s)	194, 400, 406, 738, 868
MlyI	GAGTC	3 cut(s)	13, 79, 215
MnlI	CCTC	5 cut(s)	112, 129, 424, 854, 1047
Mph1103I	ATGCAT	1 cut(s)	335
MroI	TCCGGA	1 cut(s)	54
MseI	TTAA	3 cut(s)	549, 575, 708
MslI	CAYNNNNRTG	1 cut(s)	691
MspI	CCGG	2 cut(s)	55, 1018
MspR9I	CCNGG	3 cut(s)	274, 368, 487
Mva1269I	GAATGC	1 cut(s)	860
MvaI	CCWGG	3 cut(s)	274, 368, 487
MvnI	CGCG	2 cut(s)	439, 972
MwoI	GCNNNNNNNGC	1 cut(s)	988
NdeII	GATC	6 cut(s)	256, 351, 535, 825, 919, 995
NlaIII	CATG	2 cut(s)	189, 470
NlaIV	GGNNCC	1 cut(s)	18
NmeAIII	GCCGAG	1 cut(s)	706
NsiI	ATGCAT	1 cut(s)	335
PasI	CCCWGGG	1 cut(s)	486
PctI	GAATGC	1 cut(s)	860
PfeI	GAWTC	3 cut(s)	463, 527, 901
PkrI	GCNGC	2 cut(s)	634, 637
PleI	GAGTC	3 cut(s)	12, 79, 214
PpsI	GAGTC	3 cut(s)	12, 79, 214
PpuMI	RGGWCCY	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	16
Psp6I	CCWGG	3 cut(s)	272, 366, 485
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	3 cut(s)	272, 366, 485
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	2 cut(s)	16, 841
PspPPI	RGGWCCY	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	421
PstNI	CAGNNNCTG	3 cut(s)	416, 614, 1013
PsuI	RGATCY	1 cut(s)	535
RsaI	GTAC	3 cut(s)	299, 750, 774
RsaNI	GTAC	3 cut(s)	298, 749, 773
RseI	CAYNNNNRTG	1 cut(s)	691
SaqAI	TTAA	3 cut(s)	549, 575, 708
SatI	GCNGC	2 cut(s)	633, 636
Sau3AI	GATC	6 cut(s)	256, 351, 535, 825, 919, 995
Sau96I	GGNCC	2 cut(s)	16, 841
ScaI	AGTACT	1 cut(s)	774
SchI	GAGTC	3 cut(s)	13, 79, 215
ScrFI	CCNGG	3 cut(s)	274, 368, 487
SduI	GDGCHC	3 cut(s)	113, 426, 700
SfaNI	GCATC	2 cut(s)	964, 1011
SfcI	CTRYAG	2 cut(s)	417, 499
SinI	GGWCC	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	691
Sse9I	AATT	5 cut(s)	194, 400, 406, 738, 868
SsiI	CCGC	2 cut(s)	20, 633
SspMI	CTAG	1 cut(s)	756
StyD4I	CCNGG	3 cut(s)	272, 366, 485
StyI	CCWWGG	2 cut(s)	910, 930
TaaI	ACNGT	3 cut(s)	500, 610, 772
TaqI	TCGA	1 cut(s)	324
TasI	AATT	5 cut(s)	194, 400, 406, 738, 868
TatI	WGTACW	3 cut(s)	297, 748, 772
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	3 cut(s)	463, 527, 901
Tru1I	TTAA	3 cut(s)	549, 575, 708
Tru9I	TTAA	3 cut(s)	549, 575, 708
TscAI	CASTG	3 cut(s)	108, 316, 537
TseI	GCWGC	1 cut(s)	635
TspDTI	ATGAA	1 cut(s)	206
TspRI	CASTG	3 cut(s)	108, 316, 537
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	2 cut(s)	406, 868
XspI	CTAG	1 cut(s)	756
ZrmI	AGTACT	1 cut(s)	774
Zsp2I	ATGCAT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.