Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003642

Physical Location & Seq

Genomic Coordinates Reverse (-)

53683379 .. 53684437

Gene Structure 1059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50713

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAGTCGTCCACAGGTCCCGCACCGACCTTTCTTCCATTTTGGAAATCCTTTCCAGATGATTTCGCCGAAGGGTTCTCAAATGACTCCGAACCTTTCTGCACTGCTGAACACTTTTGAGGAAAAATTGGCTGGGAGGTTGAGAAAGCTCAACCCAAAAGATAACAATGATATTGATCTTCCTGTGAGTGCTTGGGATGAGAAGTGGATTGATGTGTACTTGGACATCAGTGTAAAGTTGCTCGATATATGCATTGTCTTCAGCTCTGAGATCGCACGCTTAAACCAGGTGCATTTGTTTCTTCAGTTTGTGTTGCATAATTTGAATTCAGCCTCTTCGAAGCAATTTATTCGTGCCCGTTCTTCAGTTGATGACTGGAAGAATCATATTGCTTCAAAGAACCCCAGGATTGAGAACTGTAGCACCATTTTGGACAAGCTTGTGGAATCACTGGATCTACCAAAGGTTAAGAACTCACCAAAAGGGAAACTTTTAATGCGTGCTATGTATGGAGTGAAGGTGTTGACAGTATCTTTTTGTAATGTCTTTGCCGCAACCTTTTCTAGTTCTGCAAGCAAGTTGTTAGATTTGAATGTTGCCGAGACATATATGTGGGCACAAGCATTTAATGACTTACAGAGTAATGTAAATGGGGAAATTAGAAATGTACTTTCTAGTGGTAGAGCTACGGTACTGAAAGAGCTGGAAGCAGTTGATGGTATTGTGAAGCACTTGTATCCTATGATCCAAGATGACGTGGCCCTCGCAGAAGAAGAAGCATTCAAGAATTCTACTTCAGATTTAGAAAGGAAGGCACATAATCTTTCCCAAGGACTTGATCTTCTGACTAAGGAAGTGGATGGGTTTTTCCAAATCCTTTTTACTGGACGCGAAGCCTTGCTTTCTAAGCTGAGATCAGGTGGAGCAGTCTCTGACCGGATGCTGATGGGAAATGTAGAAGGGCAGGTTGTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

325

Amino Acids

36.44

Weight (kDa)

7.73

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46080
fragaria_vesca	FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070
malus_domestica	MD00G1111800.v1.1 MD01G1069200.v1.1
prunus_persica	Prupe.2G175300_v2.0.a1
pyrus_communis	pycom01g09860 pycom07g12990
rosa_chinensis	RchiOBHm_Chr1g0357181 RchiOBHm_Chr2g0136331 RchiOBHm_Chr2g0151201 RchiOBHm_Chr7g0201911
rosa_laevigata	RLG00000028046
rosa_multiflora	Rmu_sc0002070.1_g000062 Rmu_sc0006976.1_g000011
rosa_roxburghii	Rroxscaffold_4G00299010
rosa_rugosa	Rorug01G0254600 Rorug01G0254700 Rorug02G0231200
rosa_samantha	Rh1AG268900 Rh1BG236600 Rh1CG247100 Rh1CG252600 Rh1DG263700 Rh2AG259500 Rh5AG212900 Rh5DG553600 Rh7AG428800 Rh7CG447700
rosa_wichuraiana	Rw1G023330 Rw1G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	955
AccII	CGCG	1 cut(s)	891
AciI	CCGC	2 cut(s)	20, 552
AclWI	GGATC	2 cut(s)	462, 739
AcsI	RAATTY	2 cut(s)	325, 787
AcuI	CTGAAG	4 cut(s)	244, 287, 348, 780
AfaI	GTAC	3 cut(s)	218, 669, 693
AgsI	TTSAA	4 cut(s)	325, 396, 592, 784
AjiI	CACGTC	1 cut(s)	757
AjnI	CCWGG	2 cut(s)	285, 404
AluBI	AGCT	6 cut(s)	148, 264, 439, 686, 703, 910
AluI	AGCT	6 cut(s)	148, 264, 439, 686, 703, 910
Alw26I	GTCTC	2 cut(s)	596, 934
AlwI	GGATC	2 cut(s)	462, 739
AlwNI	CAGNNNCTG	1 cut(s)	932
AoxI	GGCC	1 cut(s)	759
ApoI	RAATTY	2 cut(s)	325, 787
AspS9I	GGNCC	2 cut(s)	16, 760
AsuHPI	GGTGA	1 cut(s)	468
AsuII	TTCGAA	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	16
BaeGI	GKGCMC	2 cut(s)	358, 619
BbsI	GAAGAC	1 cut(s)	250
BccI	CCATC	3 cut(s)	710, 854, 940
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BciT130I	CCWGG	2 cut(s)	287, 406
BciVI	GTATCC	1 cut(s)	747
BcoDI	GTCTC	2 cut(s)	596, 934
BfaI	CTAG	2 cut(s)	564, 675
BfmI	CTRYAG	1 cut(s)	418
BfuAI	ACCTGC	1 cut(s)	955
BfuI	GTATCC	1 cut(s)	747
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
Bme1390I	CCNGG	2 cut(s)	287, 406
Bme18I	GGWCC	1 cut(s)	16
BmgBI	CACGTC	1 cut(s)	757
BmgT120I	GGNCC	2 cut(s)	16, 760
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	2 cut(s)	287, 406
BmsI	GCATC	1 cut(s)	930
BpiI	GAAGAC	1 cut(s)	250
Bpu14I	TTCGAA	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	404, 829
BsaWI	WCCGGW	1 cut(s)	936
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bse1I	ACTGG	3 cut(s)	380, 456, 889
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	287, 406
BseDI	CCNNGG	2 cut(s)	404, 829
BseGI	GGATG	3 cut(s)	202, 865, 945
BseJI	GATNNNNATC	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	258, 902
BseNI	ACTGG	3 cut(s)	380, 456, 889
BseSI	GKGCMC	2 cut(s)	358, 619
BseYI	CCCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	891
BshFI	GGCC	1 cut(s)	761
BsiSI	CCGG	1 cut(s)	937
BslFI	GGGAC	1 cut(s)	2
BsmAI	GTCTC	2 cut(s)	596, 934
BsmFI	GGGAC	1 cut(s)	2
BsmI	GAATGC	1 cut(s)	779
BsnI	GGCC	1 cut(s)	761
Bsp119I	TTCGAA	1 cut(s)	338
Bsp1286I	GDGCHC	2 cut(s)	358, 619
Bsp143I	GATC	6 cut(s)	175, 270, 454, 744, 838, 914
BspACI	CCGC	2 cut(s)	20, 552
BspANI	GGCC	1 cut(s)	761
BspCNI	CTCAG	2 cut(s)	259, 903
BspFNI	CGCG	1 cut(s)	891
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	955
BspPI	GGATC	2 cut(s)	462, 739
BspT104I	TTCGAA	1 cut(s)	338
BsrI	ACTGG	3 cut(s)	380, 456, 889
BssECI	CCNNGG	2 cut(s)	404, 829
BssMI	GATC	6 cut(s)	175, 270, 454, 744, 838, 914
BssT1I	CCWWGG	1 cut(s)	829
Bst2UI	CCWGG	2 cut(s)	287, 406
Bst4CI	ACNGT	3 cut(s)	419, 529, 691
Bst6I	CTCTTC	1 cut(s)	340
BstBI	TTCGAA	1 cut(s)	338
BstC8I	GCNNGC	3 cut(s)	277, 501, 574
BstDEI	CTNAG	4 cut(s)	267, 849, 906, 911
BstF5I	GGATG	3 cut(s)	202, 865, 945
BstFNI	CGCG	1 cut(s)	891
BstKTI	GATC	6 cut(s)	178, 273, 457, 747, 841, 917
BstMAI	GTCTC	2 cut(s)	596, 934
BstMBI	GATC	6 cut(s)	175, 270, 454, 744, 838, 914
BstMWI	GCNNNNNNNGC	1 cut(s)	907
BstNI	CCWGG	2 cut(s)	287, 406
BstSCI	CCNGG	2 cut(s)	285, 404
BstSFI	CTRYAG	1 cut(s)	418
BstSLI	GKGCMC	2 cut(s)	358, 619
BstUI	CGCG	1 cut(s)	891
BstV2I	GAAGAC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	747
BsuRI	GGCC	1 cut(s)	761
BtrI	CACGTC	1 cut(s)	757
BtsCI	GGATG	3 cut(s)	202, 865, 945
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	3 cut(s)	101, 235, 449
BveI	ACCTGC	1 cut(s)	955
Cac8I	GCNNGC	3 cut(s)	277, 501, 574
CaiI	CAGNNNCTG	1 cut(s)	932
Cfr13I	GGNCC	2 cut(s)	16, 760
CseI	GACGC	1 cut(s)	897
CsiI	ACCWGGT	1 cut(s)	285
Csp6I	GTAC	3 cut(s)	217, 668, 692
CviQI	GTAC	3 cut(s)	217, 668, 692
DdeI	CTNAG	4 cut(s)	267, 849, 906, 911
DpnI	GATC	6 cut(s)	177, 272, 456, 746, 840, 916
DpnII	GATC	6 cut(s)	175, 270, 454, 744, 838, 914
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	829
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	4 cut(s)	244, 287, 348, 780
EcoO109I	RGGNCCY	1 cut(s)	16
EcoRI	GAATTC	2 cut(s)	325, 787
EcoRII	CCWGG	2 cut(s)	285, 404
EcoT14I	CCWWGG	1 cut(s)	829
EcoT22I	ATGCAT	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	829
FalI	AAGNNNNNCTT	4 cut(s)	474, 506, 885, 917
FaqI	GGGAC	1 cut(s)	2
FauI	CCCGC	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	3 cut(s)	209, 872, 952
Fsp4HI	GCNGC	1 cut(s)	552
FspBI	CTAG	2 cut(s)	564, 675
GluI	GCNGC	1 cut(s)	552
GsaI	CCCAGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	761
HapII	CCGG	1 cut(s)	937
HgaI	GACGC	1 cut(s)	897
HincII	GTYRAC	1 cut(s)	525
HindII	GTYRAC	1 cut(s)	525
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	4 cut(s)	4, 85, 382, 446
HpaII	CCGG	1 cut(s)	937
HphI	GGTGA	1 cut(s)	468
Hpy166II	GTNNAC	3 cut(s)	11, 217, 525
Hpy188I	TCNGA	5 cut(s)	90, 268, 799, 846, 934
Hpy188III	TCNNGA	2 cut(s)	55, 784
Hpy8I	GTNNAC	3 cut(s)	11, 217, 525
HpyAV	CCTTC	4 cut(s)	64, 511, 805, 953
HpyCH4III	ACNGT	3 cut(s)	419, 529, 691
HpyCH4IV	ACGT	1 cut(s)	756
HpyCH4V	TGCA	5 cut(s)	101, 252, 292, 316, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	907
HpyF3I	CTNAG	4 cut(s)	267, 849, 906, 911
HpySE526I	ACGT	1 cut(s)	756
Kzo9I	GATC	6 cut(s)	175, 270, 454, 744, 838, 914
LmnI	GCTCC	1 cut(s)	923
LweI	GCATC	1 cut(s)	930
MabI	ACCWGGT	1 cut(s)	285
MaeI	CTAG	2 cut(s)	564, 675
MaeII	ACGT	1 cut(s)	756
MalI	GATC	6 cut(s)	177, 272, 456, 746, 840, 916
MboI	GATC	6 cut(s)	175, 270, 454, 744, 838, 914
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	2 cut(s)	358, 619
MluCI	AATT	6 cut(s)	125, 319, 325, 344, 657, 787
MlyI	GAGTC	2 cut(s)	13, 79
MnlI	CCTC	5 cut(s)	112, 129, 343, 773, 966
Mph1103I	ATGCAT	1 cut(s)	254
MseI	TTAA	4 cut(s)	281, 468, 494, 627
MslI	CAYNNNNRTG	1 cut(s)	610
MspI	CCGG	1 cut(s)	937
MspR9I	CCNGG	2 cut(s)	287, 406
Mva1269I	GAATGC	1 cut(s)	779
MvaI	CCWGG	2 cut(s)	287, 406
MvnI	CGCG	1 cut(s)	891
MwoI	GCNNNNNNNGC	1 cut(s)	907
NdeII	GATC	6 cut(s)	175, 270, 454, 744, 838, 914
NlaIV	GGNNCC	1 cut(s)	18
NmeAIII	GCCGAG	1 cut(s)	625
NsiI	ATGCAT	1 cut(s)	254
NspV	TTCGAA	1 cut(s)	338
PctI	GAATGC	1 cut(s)	779
PfeI	GAWTC	2 cut(s)	382, 446
PkrI	GCNGC	1 cut(s)	553
PleI	GAGTC	2 cut(s)	12, 79
PpsI	GAGTC	2 cut(s)	12, 79
PpuMI	RGGWCCY	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	16
Psp6I	CCWGG	2 cut(s)	285, 404
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	2 cut(s)	285, 404
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	2 cut(s)	16, 760
PspPPI	RGGWCCY	1 cut(s)	16
PstNI	CAGNNNCTG	1 cut(s)	932
PsuI	RGATCY	1 cut(s)	454
RsaI	GTAC	3 cut(s)	218, 669, 693
RsaNI	GTAC	3 cut(s)	217, 668, 692
RseI	CAYNNNNRTG	1 cut(s)	610
SaqAI	TTAA	4 cut(s)	281, 468, 494, 627
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	6 cut(s)	175, 270, 454, 744, 838, 914
Sau96I	GGNCC	2 cut(s)	16, 760
SchI	GAGTC	2 cut(s)	13, 79
ScrFI	CCNGG	2 cut(s)	287, 406
SduI	GDGCHC	2 cut(s)	358, 619
SexAI	ACCWGGT	1 cut(s)	285
SfaNI	GCATC	1 cut(s)	930
SfcI	CTRYAG	1 cut(s)	418
SfuI	TTCGAA	1 cut(s)	338
SinI	GGWCC	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	610
Sse9I	AATT	6 cut(s)	125, 319, 325, 344, 657, 787
SsiI	CCGC	2 cut(s)	20, 552
SspMI	CTAG	2 cut(s)	564, 675
StyD4I	CCNGG	2 cut(s)	285, 404
StyI	CCWWGG	1 cut(s)	829
TaaI	ACNGT	3 cut(s)	419, 529, 691
TaiI	ACGT	1 cut(s)	759
TaqI	TCGA	2 cut(s)	243, 338
TasI	AATT	6 cut(s)	125, 319, 325, 344, 657, 787
TatI	WGTACW	2 cut(s)	216, 667
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	2 cut(s)	382, 446
Tru1I	TTAA	4 cut(s)	281, 468, 494, 627
Tru9I	TTAA	4 cut(s)	281, 468, 494, 627
TscAI	CASTG	3 cut(s)	108, 235, 456
TspRI	CASTG	3 cut(s)	108, 235, 456
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	2 cut(s)	325, 787
XspI	CTAG	2 cut(s)	564, 675
Zsp2I	ATGCAT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.