Rh7AG428800

Protein BPS1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003642
Physical Location & Seq
Reverse (-)
57619945 .. 57621336
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG428800.1

Sequence Viewer

Length: 1059 bp
ATGAGTCGTCCACAGGTCCCGCACCGACCTTTCTTCCATTTTGGAAATCCTTTCCAGATGATTTCGCCGAAGGGTTCTCAAATGACTCCGAACCTTTCTGCACTGCTGAACACTTTTGAGGAAACATTGGCTGGGAGGTTGAGAAAGCTCAACCCAAAAGATAACAATGATGTCCTTAGCTTGTCATGGATGAAATTGGCAATGGAGTCGCTTTGTGGAACTCGTAATGACATAAAAACTCTCATAGCTGAGATTGATCTTCCCGTGAGTGCTTGGGATGAGAAGTGGATTGATGTGTACTTGGACATCAGTGTAAAGTTGCTCGATATATGCATTGTCTTCAGCTCTGAGATCGCACGCTTAAACCAGGGGCATTTGTTTCTTCAGTTTGTGTTGCATAATTTGAATTCAGCCTCTTCGAAGCAATTTATTTGTGCCCGTTCTTCAGTTGATGACTGGAAGAATCATATTGCTTCAAAGAAGCCCAGGGTTGAGAACTGTAGCACCATTTTGGACAAGCTTGTGGAATCACTGGATCTACCAAAGGTTAAGAACTCAGCAAAAGGGAAACTTTTAATGCGTGCTATGTATGGAGTGAAGGTGTTGACAGTATCTGTTTGTAGTGTCTTTGCCGCAGCCTTTTCTGTTTCTGCAAGCAAGTTGTTAGATTTGAATGTTGCCGAGACATATATGTGGGCACAAGCATTTAATGACTTACAGAGTAATGTAAATGGGGAAATTAGAAATGTACTTTCTAGTGGTAGAGTTACGGTACTGAAAGAGCTGGAAGCAGTTGATGGTATTGTGAAGCACTTGTATCCTATGATCCAAGATGACGTGGCCCTCGCAGAAGAAGAAGCATTCAAGAATTCTACTTCAGATTTAGACAGGAAGGCACAGAATCTTTCCCAAGGACTTGATCTTCTGACCAAGGAAGTGGATGGGTTTTTCCAAATCCTTTTGACTGGACGCGATGCCTTGCTTTCTAAGCTGAGATCAGGTGGAGCAATCTCTGACCGGATGCTGATGGGAAATGTAGAAGGGCAGGTTGTGAGGTGA

Protein Analysis

352

Amino Acids

39.18

Weight (kDa)

7.01

Isoelectric Point (pI)

29.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 35 - 137 2.9e-06 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1036
AccII CGCG 1 cut(s) 972
AciI CCGC 2 cut(s) 20, 633
AclWI GGATC 2 cut(s) 543, 820
AcsI RAATTY 2 cut(s) 406, 868
AcuI CTGAAG 4 cut(s) 325, 368, 429, 861
AfaI GTAC 3 cut(s) 299, 750, 774
AgsI TTSAA 4 cut(s) 406, 477, 673, 865
AjiI CACGTC 1 cut(s) 838
AjnI CCWGG 2 cut(s) 366, 485
AluBI AGCT 7 cut(s) 148, 180, 248, 345, 520, 784, 991
AluI AGCT 7 cut(s) 148, 180, 248, 345, 520, 784, 991
Alw26I GTCTC 1 cut(s) 677
AlwI GGATC 2 cut(s) 543, 820
AlwNI CAGNNNCTG 1 cut(s) 614
AoxI GGCC 1 cut(s) 840
ApeKI GCWGC 1 cut(s) 635
ApoI RAATTY 2 cut(s) 406, 868
AspS9I GGNCC 2 cut(s) 16, 841
AsuII TTCGAA 1 cut(s) 419
AvaII GGWCC 1 cut(s) 16
BaeGI GKGCMC 2 cut(s) 439, 700
BbsI GAAGAC 1 cut(s) 331
BbvI GCAGC 1 cut(s) 647
BccI CCATC 3 cut(s) 791, 935, 1021
BcgI CGANNNNNNTGC 2 cut(s) 189, 223
BciT130I CCWGG 2 cut(s) 368, 487
BciVI GTATCC 1 cut(s) 828
BcoDI GTCTC 1 cut(s) 677
BfaI CTAG 1 cut(s) 756
BfmI CTRYAG 1 cut(s) 499
BfuAI ACCTGC 1 cut(s) 1036
BfuI GTATCC 1 cut(s) 828
BisI GCNGC 2 cut(s) 633, 636
BlsI GCNGC 2 cut(s) 634, 637
Bme1390I CCNGG 2 cut(s) 368, 487
Bme18I GGWCC 1 cut(s) 16
BmgBI CACGTC 1 cut(s) 838
BmgT120I GGNCC 2 cut(s) 16, 841
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 2 cut(s) 368, 487
BmsI GCATC 2 cut(s) 964, 1011
BpiI GAAGAC 1 cut(s) 331
Bpu10I CCTNAGC 1 cut(s) 176
Bpu14I TTCGAA 1 cut(s) 419
BsaJI CCNNGG 5 cut(s) 367, 485, 486, 910, 930
BsaWI WCCGGW 1 cut(s) 1017
BsaXI ACNNNNNCTCC 2 cut(s) 585, 615
Bse1I ACTGG 3 cut(s) 461, 537, 970
Bse3DI GCAATG 1 cut(s) 207
BseBI CCWGG 2 cut(s) 368, 487
BseDI CCNNGG 5 cut(s) 367, 485, 486, 910, 930
BseGI GGATG 4 cut(s) 195, 283, 946, 1026
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 4 cut(s) 240, 339, 570, 983
BseNI ACTGG 3 cut(s) 461, 537, 970
BseSI GKGCMC 2 cut(s) 439, 700
BseXI GCAGC 1 cut(s) 647
BseYI CCCAGC 1 cut(s) 131
BsgI GTGCAG 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 972
BshFI GGCC 1 cut(s) 842
BsiSI CCGG 1 cut(s) 1018
BslFI GGGAC 1 cut(s) 2
BsmAI GTCTC 1 cut(s) 677
BsmFI GGGAC 1 cut(s) 2
BsmI GAATGC 1 cut(s) 860
BsnI GGCC 1 cut(s) 842
Bsp119I TTCGAA 1 cut(s) 419
Bsp1286I GDGCHC 2 cut(s) 439, 700
Bsp143I GATC 6 cut(s) 256, 351, 535, 825, 919, 995
BspACI CCGC 2 cut(s) 20, 633
BspANI GGCC 1 cut(s) 842
BspCNI CTCAG 4 cut(s) 241, 340, 569, 984
BspFNI CGCG 1 cut(s) 972
BspLI GGNNCC 1 cut(s) 18
BspMI ACCTGC 1 cut(s) 1036
BspPI GGATC 2 cut(s) 543, 820
BspT104I TTCGAA 1 cut(s) 419
BsrDI GCAATG 1 cut(s) 207
BsrI ACTGG 3 cut(s) 461, 537, 970
BssECI CCNNGG 5 cut(s) 367, 485, 486, 910, 930
BssMI GATC 6 cut(s) 256, 351, 535, 825, 919, 995
BssT1I CCWWGG 2 cut(s) 910, 930
Bst2UI CCWGG 2 cut(s) 368, 487
Bst4CI ACNGT 3 cut(s) 500, 610, 772
Bst6I CTCTTC 1 cut(s) 421
BstBI TTCGAA 1 cut(s) 419
BstC8I GCNNGC 3 cut(s) 358, 582, 655
BstDEI CTNAG 6 cut(s) 176, 249, 348, 556, 987, 992
BstF5I GGATG 4 cut(s) 195, 283, 946, 1026
BstFNI CGCG 1 cut(s) 972
BstKTI GATC 6 cut(s) 259, 354, 538, 828, 922, 998
BstMAI GTCTC 1 cut(s) 677
BstMBI GATC 6 cut(s) 256, 351, 535, 825, 919, 995
BstMWI GCNNNNNNNGC 1 cut(s) 988
BstNI CCWGG 2 cut(s) 368, 487
BstSCI CCNGG 2 cut(s) 366, 485
BstSFI CTRYAG 1 cut(s) 499
BstSLI GKGCMC 2 cut(s) 439, 700
BstUI CGCG 1 cut(s) 972
BstV1I GCAGC 1 cut(s) 647
BstV2I GAAGAC 1 cut(s) 331
BstX2I RGATCY 1 cut(s) 535
BstXI CCANNNNNNTGG 1 cut(s) 937
BstYI RGATCY 1 cut(s) 535
BsuI GTATCC 1 cut(s) 828
BsuRI GGCC 1 cut(s) 842
BtgZI GCGATG 1 cut(s) 987
BtrI CACGTC 1 cut(s) 838
BtsCI GGATG 4 cut(s) 195, 283, 946, 1026
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 3 cut(s) 101, 316, 530
BveI ACCTGC 1 cut(s) 1036
Cac8I GCNNGC 3 cut(s) 358, 582, 655
CaiI CAGNNNCTG 1 cut(s) 614
Cfr13I GGNCC 2 cut(s) 16, 841
CseI GACGC 1 cut(s) 978
Csp6I GTAC 3 cut(s) 298, 749, 773
CviAII CATG 1 cut(s) 186
CviQI GTAC 3 cut(s) 298, 749, 773
DdeI CTNAG 6 cut(s) 176, 249, 348, 556, 987, 992
DpnI GATC 6 cut(s) 258, 353, 537, 827, 921, 997
DpnII GATC 6 cut(s) 256, 351, 535, 825, 919, 995
Eam1104I CTCTTC 1 cut(s) 421
EarI CTCTTC 1 cut(s) 421
Eco130I CCWWGG 2 cut(s) 910, 930
Eco47I GGWCC 1 cut(s) 16
Eco57I CTGAAG 4 cut(s) 325, 368, 429, 861
EcoO109I RGGNCCY 1 cut(s) 16
EcoRI GAATTC 2 cut(s) 406, 868
EcoRII CCWGG 2 cut(s) 366, 485
EcoT14I CCWWGG 2 cut(s) 910, 930
EcoT22I ATGCAT 1 cut(s) 335
ErhI CCWWGG 2 cut(s) 910, 930
FaeI CATG 1 cut(s) 189
FalI AAGNNNNNCTT 2 cut(s) 555, 587
FaqI GGGAC 1 cut(s) 2
FatI CATG 1 cut(s) 185
FauI CCCGC 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 633, 636
FokI GGATG 4 cut(s) 202, 290, 953, 1033
Fsp4HI GCNGC 2 cut(s) 633, 636
FspBI CTAG 1 cut(s) 756
GluI GCNGC 2 cut(s) 633, 636
GsaI CCCAGC 1 cut(s) 135
HaeIII GGCC 1 cut(s) 842
HapII CCGG 1 cut(s) 1018
HgaI GACGC 1 cut(s) 978
Hin1II CATG 1 cut(s) 189
HincII GTYRAC 1 cut(s) 606
HindII GTYRAC 1 cut(s) 606
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 6 cut(s) 4, 85, 206, 463, 527, 901
HpaII CCGG 1 cut(s) 1018
Hpy166II GTNNAC 3 cut(s) 11, 298, 606
Hpy188I TCNGA 5 cut(s) 90, 349, 880, 927, 1015
Hpy188III TCNNGA 2 cut(s) 55, 865
Hpy8I GTNNAC 3 cut(s) 11, 298, 606
HpyAV CCTTC 4 cut(s) 64, 592, 886, 1034
HpyCH4III ACNGT 3 cut(s) 500, 610, 772
HpyCH4IV ACGT 1 cut(s) 837
HpyCH4V TGCA 4 cut(s) 101, 333, 397, 653
HpyF10VI GCNNNNNNNGC 1 cut(s) 988
HpyF3I CTNAG 6 cut(s) 176, 249, 348, 556, 987, 992
HpySE526I ACGT 1 cut(s) 837
Hsp92II CATG 1 cut(s) 189
Kzo9I GATC 6 cut(s) 256, 351, 535, 825, 919, 995
LmnI GCTCC 1 cut(s) 1004
Lsp1109I GCAGC 1 cut(s) 647
LweI GCATC 2 cut(s) 964, 1011
MaeI CTAG 1 cut(s) 756
MaeII ACGT 1 cut(s) 837
MaeIII GTNAC 1 cut(s) 766
MalI GATC 6 cut(s) 258, 353, 537, 827, 921, 997
MboI GATC 6 cut(s) 256, 351, 535, 825, 919, 995
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 2 cut(s) 439, 700
MluCI AATT 6 cut(s) 194, 400, 406, 425, 738, 868
MlyI GAGTC 3 cut(s) 13, 79, 215
MnlI CCTC 5 cut(s) 112, 129, 424, 854, 1047
Mph1103I ATGCAT 1 cut(s) 335
MseI TTAA 4 cut(s) 362, 549, 575, 708
MslI CAYNNNNRTG 1 cut(s) 691
MspI CCGG 1 cut(s) 1018
MspR9I CCNGG 2 cut(s) 368, 487
Mva1269I GAATGC 1 cut(s) 860
MvaI CCWGG 2 cut(s) 368, 487
MvnI CGCG 1 cut(s) 972
MwoI GCNNNNNNNGC 1 cut(s) 988
NdeII GATC 6 cut(s) 256, 351, 535, 825, 919, 995
NlaIII CATG 1 cut(s) 189
NlaIV GGNNCC 1 cut(s) 18
NmeAIII GCCGAG 1 cut(s) 706
NsiI ATGCAT 1 cut(s) 335
NspV TTCGAA 1 cut(s) 419
PasI CCCWGGG 1 cut(s) 486
PctI GAATGC 1 cut(s) 860
PfeI GAWTC 3 cut(s) 463, 527, 901
PkrI GCNGC 2 cut(s) 634, 637
PleI GAGTC 3 cut(s) 12, 79, 214
PpsI GAGTC 3 cut(s) 12, 79, 214
PpuMI RGGWCCY 1 cut(s) 16
Psp5II RGGWCCY 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 366, 485
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 2 cut(s) 366, 485
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 2 cut(s) 16, 841
PspPPI RGGWCCY 1 cut(s) 16
PstNI CAGNNNCTG 1 cut(s) 614
PsuI RGATCY 1 cut(s) 535
RsaI GTAC 3 cut(s) 299, 750, 774
RsaNI GTAC 3 cut(s) 298, 749, 773
RseI CAYNNNNRTG 1 cut(s) 691
SaqAI TTAA 4 cut(s) 362, 549, 575, 708
SatI GCNGC 2 cut(s) 633, 636
Sau3AI GATC 6 cut(s) 256, 351, 535, 825, 919, 995
Sau96I GGNCC 2 cut(s) 16, 841
SchI GAGTC 3 cut(s) 13, 79, 215
ScrFI CCNGG 2 cut(s) 368, 487
SduI GDGCHC 2 cut(s) 439, 700
SfaNI GCATC 2 cut(s) 964, 1011
SfcI CTRYAG 1 cut(s) 499
SfuI TTCGAA 1 cut(s) 419
SinI GGWCC 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 691
Sse9I AATT 6 cut(s) 194, 400, 406, 425, 738, 868
SsiI CCGC 2 cut(s) 20, 633
SspMI CTAG 1 cut(s) 756
StyD4I CCNGG 2 cut(s) 366, 485
StyI CCWWGG 2 cut(s) 910, 930
TaaI ACNGT 3 cut(s) 500, 610, 772
TaiI ACGT 1 cut(s) 840
TaqI TCGA 2 cut(s) 324, 419
TasI AATT 6 cut(s) 194, 400, 406, 425, 738, 868
TatI WGTACW 2 cut(s) 297, 748
TauI GCSGC 1 cut(s) 635
TfiI GAWTC 3 cut(s) 463, 527, 901
Tru1I TTAA 4 cut(s) 362, 549, 575, 708
Tru9I TTAA 4 cut(s) 362, 549, 575, 708
TscAI CASTG 3 cut(s) 108, 316, 537
TseI GCWGC 1 cut(s) 635
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 3 cut(s) 108, 316, 537
VpaK11BI GGWCC 1 cut(s) 16
XapI RAATTY 2 cut(s) 406, 868
XspI CTAG 1 cut(s) 756
Zsp2I ATGCAT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.