Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003642

Physical Location & Seq

Genomic Coordinates Reverse (-)

22108443 .. 22111304

Gene Structure 2862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G175300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGAGTCGTCCACAGGAACCACACCGACCTTTCTTCCATTTTGGAAATCCTTTCCGGATGATTTCACCAAAGGGTTCTCATCTGTCTCCAAAGCTTGTTGCACTGTTAAACACTTTTGAGGAGACATTGGCTGGGAGGTTGAGAAAGCTTAACCCGAAAGACAAGGATGATGTCCTCAGCTTGTCATGGATGAAATTGGCGATGGAGTCTCTTTGTGGAACTCATAATGACATAAAAACCCTCATATCTGAGATTGACCTCCCTGTGAGTGACTGGGATGAGAAATGGATTGACGTGTACTTGGACATCAGTGTAAAGTTGCTTGATGTATGCATTGCTTTTAGCTCTGAGATCTCACGTTTAAACCAGGGCCATCTATTTCTTCAGTGCGTCTTGCATAATTTGGATTCAACCTCTTCTAACCAATTTATTCGGGCCCGCTCTTCACTTGATGGCTGGAGGCACCATATTGGTTCAAAGAACCCCAGAGTTGAGAACTGTAGCACCATTTTAGACAAGCTTGTGGAATCCCTTGATCTGCCAAAGGTAAAGAACTCAGCAAAAGGGAAACTTCTAATGCGTGCTATGTATGGAGTGAAGGTGTTGACAGTATCCGTTTGTAGTGTCTTTGCTGCAGCCTTTTCTGGTTCTGCAAAGAAGTTGTTAGATTTGAATGTTGCTGAGACATATCTGTGGGCTCAAGCATTTAATGACTTTCAGGGTAATGTAAATGGGGAAATTAGAAATGTATTTTCTAGCGGAAGATTCATGGTACTTAAAGAGCTGGAAGCAGTTGATGGTATTGTAAAGGAGTTGTATCCCAAGATCCAAGATGGTGTGGGCCTTGCTGAAGGGAAAGAGTTCCGCAGTTCTATTTCTGATTTAGAAAGTAAGGCACAAAAGCTTTCTCAGGGACTTGATCTTCTTACAAAGGAAGTGGATGGATTTTTCCAAATCCTTTTAACCGGACGTGACGCTTTGCTTTCGAAACTAAGATCTGGGGGAGCAGTCTCAGACCAGATGCTGGCGGGAAATGTAGGAGCGCAGGTTGTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

353

Amino Acids

39.08

Weight (kDa)

8.18

Isoelectric Point (pI)

30.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46080
fragaria_vesca	FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070
malus_domestica	MD00G1111800.v1.1 MD01G1069200.v1.1
prunus_persica	Prupe.2G175300_v2.0.a1
pyrus_communis	pycom01g09860 pycom07g12990
rosa_chinensis	RchiOBHm_Chr1g0357181 RchiOBHm_Chr2g0136331 RchiOBHm_Chr2g0151201 RchiOBHm_Chr7g0201911
rosa_laevigata	RLG00000028046
rosa_multiflora	Rmu_sc0002070.1_g000062 Rmu_sc0006976.1_g000011
rosa_roxburghii	Rroxscaffold_4G00299010
rosa_rugosa	Rorug01G0254600 Rorug01G0254700 Rorug02G0231200
rosa_samantha	Rh1AG268900 Rh1BG236600 Rh1CG247100 Rh1CG252600 Rh1DG263700 Rh2AG259500 Rh5AG212900 Rh5DG553600 Rh7AG428800 Rh7CG447700
rosa_wichuraiana	Rw1G023330 Rw1G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1036
AccB1I	GGYRCC	1 cut(s)	462
AccB7I	CCANNNNNTGG	1 cut(s)	1024
AccBSI	CCGCTC	1 cut(s)	441
AccIII	TCCGGA	1 cut(s)	54
AciI	CCGC	4 cut(s)	439, 759, 865, 1028
AclWI	GGATC	1 cut(s)	820
AcuI	CTGAAG	2 cut(s)	368, 870
AfaI	GTAC	2 cut(s)	299, 774
AfiI	CCNNNNNNNGG	1 cut(s)	1024
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	3 cut(s)	411, 477, 673
AjiI	CACGTC	2 cut(s)	295, 971
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	7 cut(s)	94, 148, 180, 345, 520, 784, 904
AluI	AGCT	7 cut(s)	94, 148, 180, 345, 520, 784, 904
Alw26I	GTCTC	5 cut(s)	90, 116, 213, 677, 1015
AlwI	GGATC	1 cut(s)	820
AlwNI	CAGNNNCTG	1 cut(s)	1024
Aor13HI	TCCGGA	1 cut(s)	54
AoxI	GGCC	3 cut(s)	370, 435, 841
ApaI	GGGCCC	1 cut(s)	439
ApeKI	GCWGC	2 cut(s)	632, 635
Asp700I	GAANNNNTTC	1 cut(s)	860
AspLEI	GCGC	1 cut(s)	1045
AspS9I	GGNCC	4 cut(s)	370, 435, 436, 841
AsuHPI	GGTGA	1 cut(s)	57
AsuII	TTCGAA	1 cut(s)	986
BaeGI	GKGCMC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	462
BanII	GRGCYC	2 cut(s)	439, 700
BbvCI	CCTCAGC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	619, 647
BccI	CCATC	6 cut(s)	196, 381, 446, 791, 827, 935
BciT130I	CCWGG	1 cut(s)	368
BciVI	GTATCC	2 cut(s)	622, 828
BcoDI	GTCTC	5 cut(s)	90, 116, 213, 677, 1015
BfaI	CTAG	1 cut(s)	756
BfmI	CTRYAG	2 cut(s)	499, 633
BfuAI	ACCTGC	1 cut(s)	1036
BfuI	GTATCC	2 cut(s)	622, 828
BglII	AGATCT	2 cut(s)	351, 995
BisI	GCNGC	2 cut(s)	633, 636
BlsI	GCNGC	2 cut(s)	634, 637
Bme1390I	CCNGG	1 cut(s)	368
BmgBI	CACGTC	2 cut(s)	295, 971
BmgT120I	GGNCC	4 cut(s)	370, 435, 436, 841
BmiI	GGNNCC	3 cut(s)	18, 437, 464
BmrFI	CCNGG	1 cut(s)	368
BmrI	ACTGGG	1 cut(s)	283
BmsI	GCATC	1 cut(s)	1011
BmuI	ACTGGG	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	478
Bpu10I	CCTNAGC	1 cut(s)	176
Bpu14I	TTCGAA	1 cut(s)	986
BpuEI	CTTGAG	1 cut(s)	684
BsaJI	CCNNGG	1 cut(s)	367
BsaWI	WCCGGW	2 cut(s)	54, 965
BsaXI	ACNNNNNCTCC	3 cut(s)	585, 615, 1032
Bsc4I	CCNNNNNNNGG	1 cut(s)	1024
Bse1I	ACTGG	1 cut(s)	278
Bse3DI	GCAATG	1 cut(s)	333
BseAI	TCCGGA	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	5 cut(s)	63, 172, 195, 283, 946
BseLI	CCNNNNNNNGG	1 cut(s)	1024
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	7 cut(s)	190, 240, 339, 570, 672, 923, 1026
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	2 cut(s)	619, 647
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	3 cut(s)	372, 437, 843
BshNI	GGYRCC	1 cut(s)	462
BsiSI	CCGG	2 cut(s)	55, 966
BslFI	GGGAC	1 cut(s)	927
BslI	CCNNNNNNNGG	1 cut(s)	1024
BsmAI	GTCTC	5 cut(s)	90, 116, 213, 677, 1015
BsmFI	GGGAC	1 cut(s)	927
BsnI	GGCC	3 cut(s)	372, 437, 843
Bsp119I	TTCGAA	1 cut(s)	986
Bsp120I	GGGCCC	1 cut(s)	435
Bsp1286I	GDGCHC	2 cut(s)	439, 700
Bsp13I	TCCGGA	1 cut(s)	54
Bsp143I	GATC	5 cut(s)	351, 535, 825, 919, 995
BspACI	CCGC	4 cut(s)	439, 759, 865, 1028
BspANI	GGCC	3 cut(s)	372, 437, 843
BspCNI	CTCAG	7 cut(s)	189, 241, 340, 569, 673, 922, 1025
BspEI	TCCGGA	1 cut(s)	54
BspLI	GGNNCC	3 cut(s)	18, 437, 464
BspMAI	CTGCAG	1 cut(s)	637
BspMI	ACCTGC	1 cut(s)	1036
BspPI	GGATC	1 cut(s)	820
BspQI	GCTCTTC	1 cut(s)	448
BspT104I	TTCGAA	1 cut(s)	986
BspT107I	GGYRCC	1 cut(s)	462
BsrBI	CCGCTC	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	5 cut(s)	351, 535, 825, 919, 995
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	3 cut(s)	105, 500, 610
Bst6I	CTCTTC	2 cut(s)	421, 448
BstBI	TTCGAA	1 cut(s)	986
BstC8I	GCNNGC	3 cut(s)	439, 582, 1026
BstDEI	CTNAG	8 cut(s)	176, 249, 348, 556, 681, 909, 992, 1012
BstF5I	GGATG	5 cut(s)	63, 172, 195, 283, 946
BstHHI	GCGC	1 cut(s)	1045
BstKTI	GATC	5 cut(s)	354, 538, 828, 922, 998
BstMAI	GTCTC	5 cut(s)	90, 116, 213, 677, 1015
BstMBI	GATC	5 cut(s)	351, 535, 825, 919, 995
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	2 cut(s)	499, 633
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	2 cut(s)	619, 647
BstX2I	RGATCY	3 cut(s)	351, 825, 995
BstYI	RGATCY	3 cut(s)	351, 825, 995
BsuI	GTATCC	2 cut(s)	622, 828
BsuRI	GGCC	3 cut(s)	372, 437, 843
BtgZI	GCGATG	1 cut(s)	215
BtrI	CACGTC	2 cut(s)	295, 971
BtsCI	GGATG	5 cut(s)	63, 172, 195, 283, 946
BtsIMutI	CAGTG	3 cut(s)	101, 316, 392
BveI	ACCTGC	1 cut(s)	1036
Cac8I	GCNNGC	3 cut(s)	439, 582, 1026
CaiI	CAGNNNCTG	1 cut(s)	1024
CfoI	GCGC	1 cut(s)	1045
Cfr13I	GGNCC	4 cut(s)	370, 435, 436, 841
CseI	GACGC	2 cut(s)	379, 983
Csp6I	GTAC	2 cut(s)	298, 773
CspCI	CAANNNNNGTGG	2 cut(s)	918, 953
CviAII	CATG	2 cut(s)	186, 769
CviQI	GTAC	2 cut(s)	298, 773
DdeI	CTNAG	8 cut(s)	176, 249, 348, 556, 681, 909, 992, 1012
DpnI	GATC	5 cut(s)	353, 537, 827, 921, 997
DpnII	GATC	5 cut(s)	351, 535, 825, 919, 995
DraI	TTTAAA	1 cut(s)	363
Eam1104I	CTCTTC	2 cut(s)	421, 448
EarI	CTCTTC	2 cut(s)	421, 448
Eco24I	GRGCYC	2 cut(s)	439, 700
Eco57I	CTGAAG	2 cut(s)	368, 870
EcoRII	CCWGG	1 cut(s)	366
EcoT22I	ATGCAT	1 cut(s)	335
EcoT38I	GRGCYC	2 cut(s)	439, 700
FaeI	CATG	2 cut(s)	189, 772
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FaqI	GGGAC	1 cut(s)	927
FatI	CATG	2 cut(s)	185, 768
FauI	CCCGC	2 cut(s)	446, 1021
Fnu4HI	GCNGC	2 cut(s)	633, 636
FokI	GGATG	5 cut(s)	70, 179, 202, 290, 953
FriOI	GRGCYC	2 cut(s)	439, 700
Fsp4HI	GCNGC	2 cut(s)	633, 636
FspBI	CTAG	1 cut(s)	756
GlaI	GCGC	1 cut(s)	1044
GluI	GCNGC	2 cut(s)	633, 636
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	478
HaeIII	GGCC	3 cut(s)	372, 437, 843
HapII	CCGG	2 cut(s)	55, 966
HgaI	GACGC	2 cut(s)	379, 983
HhaI	GCGC	1 cut(s)	1045
Hin1II	CATG	2 cut(s)	189, 772
Hin6I	GCGC	1 cut(s)	1043
HinP1I	GCGC	1 cut(s)	1043
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HindIII	AAGCTT	4 cut(s)	92, 146, 518, 902
HinfI	GANTC	5 cut(s)	4, 206, 407, 527, 765
HpaII	CCGG	2 cut(s)	55, 966
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	3 cut(s)	11, 298, 606
Hpy188I	TCNGA	4 cut(s)	250, 349, 880, 1015
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	3 cut(s)	11, 298, 606
HpyAV	CCTTC	2 cut(s)	592, 845
HpyCH4III	ACNGT	3 cut(s)	105, 500, 610
HpyCH4IV	ACGT	3 cut(s)	294, 358, 970
HpyCH4V	TGCA	5 cut(s)	101, 333, 397, 635, 653
HpyF3I	CTNAG	8 cut(s)	176, 249, 348, 556, 681, 909, 992, 1012
HpySE526I	ACGT	3 cut(s)	294, 358, 970
Hsp92II	CATG	2 cut(s)	189, 772
HspAI	GCGC	1 cut(s)	1043
Kpn2I	TCCGGA	1 cut(s)	54
Kzo9I	GATC	5 cut(s)	351, 535, 825, 919, 995
LguI	GCTCTTC	1 cut(s)	448
LmnI	GCTCC	2 cut(s)	1004, 1040
Lsp1109I	GCAGC	2 cut(s)	619, 647
LweI	GCATC	1 cut(s)	1011
MaeI	CTAG	1 cut(s)	756
MaeII	ACGT	3 cut(s)	294, 358, 970
MaeIII	GTNAC	2 cut(s)	269, 971
MalI	GATC	5 cut(s)	353, 537, 827, 921, 997
MbiI	CCGCTC	1 cut(s)	441
MboI	GATC	5 cut(s)	351, 535, 825, 919, 995
MboII	GAAGA	6 cut(s)	25, 374, 408, 435, 774, 914
MflI	RGATCY	3 cut(s)	351, 825, 995
MhlI	GDGCHC	2 cut(s)	439, 700
MluCI	AATT	4 cut(s)	194, 400, 425, 738
MlyI	GAGTC	2 cut(s)	13, 215
MnlI	CCTC	7 cut(s)	112, 129, 185, 251, 269, 424, 453
Mph1103I	ATGCAT	1 cut(s)	335
MroI	TCCGGA	1 cut(s)	54
MroXI	GAANNNNTTC	1 cut(s)	860
MseI	TTAA	6 cut(s)	107, 150, 362, 708, 777, 962
MslI	CAYNNNNRTG	1 cut(s)	691
MspI	CCGG	2 cut(s)	55, 966
MspR9I	CCNGG	1 cut(s)	368
MssI	GTTTAAAC	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	368
NdeII	GATC	5 cut(s)	351, 535, 825, 919, 995
NlaIII	CATG	2 cut(s)	189, 772
NlaIV	GGNNCC	3 cut(s)	18, 437, 464
NmuCI	GTSAC	2 cut(s)	269, 971
NsiI	ATGCAT	1 cut(s)	335
NspV	TTCGAA	1 cut(s)	986
PciSI	GCTCTTC	1 cut(s)	448
PdmI	GAANNNNTTC	1 cut(s)	860
PfeI	GAWTC	3 cut(s)	407, 527, 765
PflMI	CCANNNNNTGG	1 cut(s)	1024
PkrI	GCNGC	2 cut(s)	634, 637
PleI	GAGTC	2 cut(s)	12, 214
PmeI	GTTTAAAC	1 cut(s)	363
PpsI	GAGTC	2 cut(s)	12, 214
Psp6I	CCWGG	1 cut(s)	366
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	3 cut(s)	18, 437, 464
PspOMI	GGGCCC	1 cut(s)	435
PspPI	GGNCC	4 cut(s)	370, 435, 436, 841
PstI	CTGCAG	1 cut(s)	637
PstNI	CAGNNNCTG	1 cut(s)	1024
PsuI	RGATCY	3 cut(s)	351, 825, 995
RsaI	GTAC	2 cut(s)	299, 774
RsaNI	GTAC	2 cut(s)	298, 773
RseI	CAYNNNNRTG	1 cut(s)	691
SapI	GCTCTTC	1 cut(s)	448
SaqAI	TTAA	6 cut(s)	107, 150, 362, 708, 777, 962
SatI	GCNGC	2 cut(s)	633, 636
Sau3AI	GATC	5 cut(s)	351, 535, 825, 919, 995
Sau96I	GGNCC	4 cut(s)	370, 435, 436, 841
SchI	GAGTC	2 cut(s)	13, 215
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	2 cut(s)	439, 700
SfaNI	GCATC	1 cut(s)	1011
SfcI	CTRYAG	2 cut(s)	499, 633
SfuI	TTCGAA	1 cut(s)	986
SmiMI	CAYNNNNRTG	1 cut(s)	691
SmlI	CTYRAG	1 cut(s)	699
SmoI	CTYRAG	1 cut(s)	699
Sse9I	AATT	4 cut(s)	194, 400, 425, 738
SsiI	CCGC	4 cut(s)	439, 759, 865, 1028
SspMI	CTAG	1 cut(s)	756
StyD4I	CCNGG	1 cut(s)	366
TaaI	ACNGT	3 cut(s)	105, 500, 610
TaiI	ACGT	3 cut(s)	297, 361, 973
TaqI	TCGA	1 cut(s)	986
TasI	AATT	4 cut(s)	194, 400, 425, 738
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	3 cut(s)	407, 527, 765
Tru1I	TTAA	6 cut(s)	107, 150, 362, 708, 777, 962
Tru9I	TTAA	6 cut(s)	107, 150, 362, 708, 777, 962
TscAI	CASTG	3 cut(s)	108, 316, 392
TseFI	GTSAC	2 cut(s)	269, 971
TseI	GCWGC	2 cut(s)	632, 635
Tsp45I	GTSAC	2 cut(s)	269, 971
TspDTI	ATGAA	2 cut(s)	206, 757
TspGWI	ACGGA	1 cut(s)	604
TspRI	CASTG	3 cut(s)	108, 316, 392
Van91I	CCANNNNNTGG	1 cut(s)	1024
XmnI	GAANNNNTTC	1 cut(s)	860
XspI	CTAG	1 cut(s)	756
Zsp2I	ATGCAT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.