Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003642

Physical Location & Seq

Genomic Coordinates Reverse (-)

10653937 .. 10655619

Gene Structure 1683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g09860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGATTGCACCAAAGGGTTCCCAACTGTCTCCAAGGCTTGTTGGACTGTTGAACACGTTTGAGGAAACATTGGCTGGGAGGCTAAGAAAGCTTAACCCAAAAGACAAGGATGATGTCCTCAGCTTGTCATGGATGAAATTAGCTATGGAGTCTCTTTGTGGAACTCATAATGACATAAAATCCCTCATAGCTGAAATTGATCTCCCTGTTAGTAACTGGGACGAGAAATGGATTGATGTGTACTTGGACATCAGTGTGAAGTTGCTTGATGTATGCATTGCTTTTAGCTCTGAGATCTCACGTTTAAACCAGGGACATCTTTATCTTCAGTGCGGCTTGCATAATTTGGATTCAACTACTTCAGACCAATTTATTCGGGCCCGTTCCTCACTTGATGGCTGGAGGCATCATATTAGTTCAAAAAACCCTAGAGTTGAGAACTGTAGCACCATTTTAGATAAGCTTGTGGAATCCCTTGATCTGCCAAAAGTTAAGAACTCAGCCAAAGGGAAACTTTTGATGCGTGCTATGTATGGAGTGAAGGTGTTGACAATATCTGTTTGCAGTGTCTTTGCTGCCGCCTTTTCTGGTTCTGCAAAGAAGTTGTTAGATTTGAATGTCGCTGATACATATTTGTGGGCTCAAGCGTTTAACGATTTACAGGGTATTGTAAATGGGGAAATTAGAAATGTTTTTTCTAGTGGAAGAGTCATGGTACTGAAAGAGCTGGAAGCAGTTGATGATACAGTCAAGGAAATGTATCCCAAGATCCAAGATGGCGTTGACCTTGCTGAAGGGAATGCATTCAAGAATTCTATTTCAGACTTAGACAGGAAGGCACAGAAACTCTCCCAAGGGCTCGATCTTCTTACAAAGGAAGTTGATGGATTTTTCCAAATCCTTTTAGCCGGGCGTGACACATTGCTTTCCAAACTAAGATCAGGTGGAGCAGTCTCAGACCGGATGCTGATGGGAAATGTGGAAGCTTGCGCCGCGGATGATTACCAGCAGGAAGTTTCTCTCTCGGTGTGGCAAACAGAATTTCCAGAGGGCATTGCAAGTTTAGGGTGCCCTTCAATGACTGAAGATGGTTTGTATATACGATTCGTCGAAGAATTTTCCTCCCCACAGTCAATGACTGAAGATAGTTTTTATATACGATTCGTCGAAGAATTTTCCTCACTGAAGATAGTTTTTATATACGATTCGTCGAAGAATTTTCCTCCCCACAGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

413

Amino Acids

45.89

Weight (kDa)

5.12

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46080
fragaria_vesca	FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070
malus_domestica	MD00G1111800.v1.1 MD01G1069200.v1.1
prunus_persica	Prupe.2G175300_v2.0.a1
pyrus_communis	pycom01g09860 pycom07g12990
rosa_chinensis	RchiOBHm_Chr1g0357181 RchiOBHm_Chr2g0136331 RchiOBHm_Chr2g0151201 RchiOBHm_Chr7g0201911
rosa_laevigata	RLG00000028046
rosa_multiflora	Rmu_sc0002070.1_g000062 Rmu_sc0006976.1_g000011
rosa_roxburghii	Rroxscaffold_4G00299010
rosa_rugosa	Rorug01G0254600 Rorug01G0254700 Rorug02G0231200
rosa_samantha	Rh1AG268900 Rh1BG236600 Rh1CG247100 Rh1CG252600 Rh1DG263700 Rh2AG259500 Rh5AG212900 Rh5DG553600 Rh7AG428800 Rh7CG447700
rosa_wichuraiana	Rw1G023330 Rw1G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1068
AccII	CGCG	1 cut(s)	995
AciI	CCGC	4 cut(s)	333, 579, 993, 995
AclWI	GGATC	1 cut(s)	763
AcsI	RAATTY	5 cut(s)	811, 1040, 1115, 1172, 1216
AcuI	CTGAAG	6 cut(s)	311, 345, 813, 1104, 1161, 1205
AfaI	GTAC	2 cut(s)	242, 717
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	6 cut(s)	52, 354, 420, 616, 808, 1077
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	8 cut(s)	91, 123, 143, 191, 288, 463, 727, 986
AluI	AGCT	8 cut(s)	91, 123, 143, 191, 288, 463, 727, 986
Alw26I	GTCTC	3 cut(s)	33, 156, 958
AlwI	GGATC	1 cut(s)	763
AoxI	GGCC	1 cut(s)	378
ApaI	GGGCCC	1 cut(s)	382
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	5 cut(s)	811, 1040, 1115, 1172, 1216
Asp700I	GAANNNNTTC	1 cut(s)	803
AspLEI	GCGC	1 cut(s)	992
AspS9I	GGNCC	2 cut(s)	378, 379
AsuC2I	CCSGG	1 cut(s)	910
BaeGI	GKGCMC	2 cut(s)	382, 1073
BanI	GGYRCC	1 cut(s)	1068
BanII	GRGCYC	3 cut(s)	382, 643, 861
BbvCI	CCTCAGC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	562
BccI	CCATC	5 cut(s)	389, 770, 878, 964, 1082
BciT130I	CCWGG	1 cut(s)	311
BciVI	GTATCC	1 cut(s)	771
BcnI	CCSGG	1 cut(s)	910
BcoDI	GTCTC	3 cut(s)	33, 156, 958
BfaI	CTAG	2 cut(s)	429, 699
BfmI	CTRYAG	1 cut(s)	442
BfuI	GTATCC	1 cut(s)	771
BglII	AGATCT	1 cut(s)	294
BisI	GCNGC	4 cut(s)	334, 576, 579, 993
BlsI	GCNGC	4 cut(s)	335, 577, 580, 994
Bme1390I	CCNGG	2 cut(s)	311, 910
BmgT120I	GGNCC	2 cut(s)	378, 379
BmiI	GGNNCC	3 cut(s)	19, 380, 1070
BmrFI	CCNGG	2 cut(s)	311, 910
BmrI	ACTGGG	1 cut(s)	226
BmsI	GCATC	3 cut(s)	415, 510, 954
BmuI	ACTGGG	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	421
Bpu10I	CCTNAGC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	627
BpuMI	CCSGG	1 cut(s)	910
BsaJI	CCNNGG	4 cut(s)	32, 310, 853, 993
BsaWI	WCCGGW	1 cut(s)	960
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bse1I	ACTGG	1 cut(s)	221
Bse3DI	GCAATG	3 cut(s)	276, 920, 1053
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	4 cut(s)	32, 310, 853, 993
BseGI	GGATG	4 cut(s)	115, 138, 969, 1003
BseMI	GCAATG	3 cut(s)	276, 920, 1053
BseMII	CTCAG	4 cut(s)	133, 282, 513, 969
BseNI	ACTGG	1 cut(s)	221
BseSI	GKGCMC	2 cut(s)	382, 1073
BseXI	GCAGC	1 cut(s)	562
BseYI	CCCAGC	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	995
BshFI	GGCC	1 cut(s)	380
BshNI	GGYRCC	1 cut(s)	1068
BsiSI	CCGG	2 cut(s)	909, 961
BslFI	GGGAC	2 cut(s)	233, 327
BsmAI	GTCTC	3 cut(s)	33, 156, 958
BsmFI	GGGAC	2 cut(s)	233, 327
BsmI	GAATGC	2 cut(s)	803, 805
BsnI	GGCC	1 cut(s)	380
Bsp120I	GGGCCC	1 cut(s)	378
Bsp1286I	GDGCHC	4 cut(s)	382, 643, 861, 1073
Bsp143I	GATC	6 cut(s)	199, 294, 478, 768, 862, 938
BspACI	CCGC	4 cut(s)	333, 579, 993, 995
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	4 cut(s)	132, 283, 512, 968
BspFNI	CGCG	1 cut(s)	995
BspLI	GGNNCC	3 cut(s)	19, 380, 1070
BspPI	GGATC	1 cut(s)	763
BspT107I	GGYRCC	1 cut(s)	1068
BsrDI	GCAATG	3 cut(s)	276, 920, 1053
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	4 cut(s)	32, 310, 853, 993
BssMI	GATC	6 cut(s)	199, 294, 478, 768, 862, 938
BssT1I	CCWWGG	2 cut(s)	32, 853
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	6 cut(s)	27, 48, 443, 748, 1131, 1232
Bst6I	CTCTTC	1 cut(s)	700
BstC8I	GCNNGC	3 cut(s)	338, 525, 988
BstDEI	CTNAG	7 cut(s)	83, 119, 291, 499, 826, 935, 955
BstDSI	CCRYGG	1 cut(s)	993
BstF5I	GGATG	4 cut(s)	115, 138, 969, 1003
BstFNI	CGCG	1 cut(s)	995
BstHHI	GCGC	1 cut(s)	992
BstKTI	GATC	6 cut(s)	202, 297, 481, 771, 865, 941
BstMAI	GTCTC	3 cut(s)	33, 156, 958
BstMBI	GATC	6 cut(s)	199, 294, 478, 768, 862, 938
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 992
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	309, 908
BstSFI	CTRYAG	1 cut(s)	442
BstSLI	GKGCMC	2 cut(s)	382, 1073
BstUI	CGCG	1 cut(s)	995
BstV1I	GCAGC	1 cut(s)	562
BstX2I	RGATCY	2 cut(s)	294, 768
BstYI	RGATCY	2 cut(s)	294, 768
BsuI	GTATCC	1 cut(s)	771
BsuRI	GGCC	1 cut(s)	380
BtgI	CCRYGG	1 cut(s)	993
BtsCI	GGATG	4 cut(s)	115, 138, 969, 1003
BtsI	GCAGTG	1 cut(s)	571
BtsIMutI	CAGTG	4 cut(s)	259, 335, 571, 1181
Cac8I	GCNNGC	3 cut(s)	338, 525, 988
CfoI	GCGC	1 cut(s)	992
Cfr13I	GGNCC	2 cut(s)	378, 379
Cfr42I	CCGCGG	1 cut(s)	996
Csp6I	GTAC	2 cut(s)	241, 716
CviAII	CATG	2 cut(s)	129, 712
CviQI	GTAC	2 cut(s)	241, 716
DdeI	CTNAG	7 cut(s)	83, 119, 291, 499, 826, 935, 955
DpnI	GATC	6 cut(s)	201, 296, 480, 770, 864, 940
DpnII	GATC	6 cut(s)	199, 294, 478, 768, 862, 938
DraI	TTTAAA	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	700
EarI	CTCTTC	1 cut(s)	700
Eco130I	CCWWGG	2 cut(s)	32, 853
Eco24I	GRGCYC	3 cut(s)	382, 643, 861
Eco57I	CTGAAG	6 cut(s)	311, 345, 813, 1104, 1161, 1205
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	2 cut(s)	32, 853
EcoT22I	ATGCAT	2 cut(s)	278, 805
EcoT38I	GRGCYC	3 cut(s)	382, 643, 861
ErhI	CCWWGG	2 cut(s)	32, 853
FaeI	CATG	2 cut(s)	132, 715
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FaqI	GGGAC	2 cut(s)	233, 327
FatI	CATG	2 cut(s)	128, 711
Fnu4HI	GCNGC	4 cut(s)	334, 576, 579, 993
FokI	GGATG	4 cut(s)	122, 145, 976, 1010
FriOI	GRGCYC	3 cut(s)	382, 643, 861
Fsp4HI	GCNGC	4 cut(s)	334, 576, 579, 993
FspBI	CTAG	2 cut(s)	429, 699
GlaI	GCGC	1 cut(s)	991
GluI	GCNGC	4 cut(s)	334, 576, 579, 993
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	421
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	2 cut(s)	909, 961
HhaI	GCGC	1 cut(s)	992
Hin1II	CATG	2 cut(s)	132, 715
Hin6I	GCGC	1 cut(s)	990
HinP1I	GCGC	1 cut(s)	990
HincII	GTYRAC	2 cut(s)	549, 784
HindII	GTYRAC	2 cut(s)	549, 784
HindIII	AAGCTT	3 cut(s)	89, 461, 984
HinfI	GANTC	7 cut(s)	149, 350, 470, 708, 1104, 1161, 1205
HpaII	CCGG	2 cut(s)	909, 961
Hpy166II	GTNNAC	3 cut(s)	241, 549, 784
Hpy188I	TCNGA	4 cut(s)	292, 364, 823, 958
Hpy188III	TCNNGA	2 cut(s)	808, 1046
Hpy8I	GTNNAC	3 cut(s)	241, 549, 784
Hpy99I	CGWCG	3 cut(s)	1112, 1169, 1213
HpyAV	CCTTC	4 cut(s)	535, 788, 829, 1083
HpyCH4III	ACNGT	6 cut(s)	27, 48, 443, 748, 1131, 1232
HpyCH4IV	ACGT	2 cut(s)	56, 301
HpyCH4V	TGCA	7 cut(s)	8, 276, 340, 564, 596, 803, 1058
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 992
HpyF3I	CTNAG	7 cut(s)	83, 119, 291, 499, 826, 935, 955
HpySE526I	ACGT	2 cut(s)	56, 301
Hsp92II	CATG	2 cut(s)	132, 715
HspAI	GCGC	1 cut(s)	990
KspI	CCGCGG	1 cut(s)	996
Kzo9I	GATC	6 cut(s)	199, 294, 478, 768, 862, 938
LmnI	GCTCC	1 cut(s)	947
Lsp1109I	GCAGC	1 cut(s)	562
LweI	GCATC	3 cut(s)	415, 510, 954
MaeI	CTAG	2 cut(s)	429, 699
MaeII	ACGT	2 cut(s)	56, 301
MaeIII	GTNAC	2 cut(s)	212, 914
MalI	GATC	6 cut(s)	201, 296, 480, 770, 864, 940
MboI	GATC	6 cut(s)	199, 294, 478, 768, 862, 938
MboII	GAAGA	9 cut(s)	317, 717, 857, 1097, 1124, 1154, 1181, 1198, 1225
MflI	RGATCY	2 cut(s)	294, 768
MhlI	GDGCHC	4 cut(s)	382, 643, 861, 1073
MlyI	GAGTC	2 cut(s)	158, 717
MmeI	TCCRAC	1 cut(s)	22
Mph1103I	ATGCAT	2 cut(s)	278, 805
MroXI	GAANNNNTTC	1 cut(s)	803
MseI	TTAA	4 cut(s)	93, 305, 492, 651
MslI	CAYNNNNRTG	2 cut(s)	254, 634
MspA1I	CMGCKG	1 cut(s)	995
MspI	CCGG	2 cut(s)	909, 961
MspR9I	CCNGG	2 cut(s)	311, 910
MssI	GTTTAAAC	1 cut(s)	306
Mva1269I	GAATGC	2 cut(s)	803, 805
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	1 cut(s)	995
MwoI	GCNNNNNNNGC	2 cut(s)	88, 992
NciI	CCSGG	1 cut(s)	910
NdeII	GATC	6 cut(s)	199, 294, 478, 768, 862, 938
NlaIII	CATG	2 cut(s)	132, 715
NlaIV	GGNNCC	3 cut(s)	19, 380, 1070
NmuCI	GTSAC	1 cut(s)	914
NsiI	ATGCAT	2 cut(s)	278, 805
PctI	GAATGC	2 cut(s)	803, 805
PdmI	GAANNNNTTC	1 cut(s)	803
PfeI	GAWTC	5 cut(s)	350, 470, 1104, 1161, 1205
PkrI	GCNGC	4 cut(s)	335, 577, 580, 994
PleI	GAGTC	2 cut(s)	157, 716
PmeI	GTTTAAAC	1 cut(s)	306
PpsI	GAGTC	2 cut(s)	157, 716
Psp6I	CCWGG	1 cut(s)	309
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	3 cut(s)	19, 380, 1070
PspOMI	GGGCCC	1 cut(s)	378
PspPI	GGNCC	2 cut(s)	378, 379
PsuI	RGATCY	2 cut(s)	294, 768
RsaI	GTAC	2 cut(s)	242, 717
RsaNI	GTAC	2 cut(s)	241, 716
RseI	CAYNNNNRTG	2 cut(s)	254, 634
SacII	CCGCGG	1 cut(s)	996
SaqAI	TTAA	4 cut(s)	93, 305, 492, 651
SatI	GCNGC	4 cut(s)	334, 576, 579, 993
Sau3AI	GATC	6 cut(s)	199, 294, 478, 768, 862, 938
Sau96I	GGNCC	2 cut(s)	378, 379
SchI	GAGTC	2 cut(s)	158, 717
ScrFI	CCNGG	2 cut(s)	311, 910
SduI	GDGCHC	4 cut(s)	382, 643, 861, 1073
SfaNI	GCATC	3 cut(s)	415, 510, 954
SfcI	CTRYAG	1 cut(s)	442
Sfr303I	CCGCGG	1 cut(s)	996
SgrBI	CCGCGG	1 cut(s)	996
SmiMI	CAYNNNNRTG	2 cut(s)	254, 634
SmlI	CTYRAG	1 cut(s)	642
SmoI	CTYRAG	1 cut(s)	642
SsiI	CCGC	4 cut(s)	333, 579, 993, 995
SspMI	CTAG	2 cut(s)	429, 699
StyD4I	CCNGG	2 cut(s)	309, 908
StyI	CCWWGG	2 cut(s)	32, 853
TaaI	ACNGT	6 cut(s)	27, 48, 443, 748, 1131, 1232
TaiI	ACGT	2 cut(s)	59, 304
TaqI	TCGA	4 cut(s)	861, 1110, 1167, 1211
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	3 cut(s)	336, 581, 995
TfiI	GAWTC	5 cut(s)	350, 470, 1104, 1161, 1205
Tru1I	TTAA	4 cut(s)	93, 305, 492, 651
Tru9I	TTAA	4 cut(s)	93, 305, 492, 651
TscAI	CASTG	4 cut(s)	259, 335, 571, 1188
TseFI	GTSAC	1 cut(s)	914
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	1 cut(s)	914
TspDTI	ATGAA	1 cut(s)	149
TspRI	CASTG	4 cut(s)	259, 335, 571, 1188
XapI	RAATTY	5 cut(s)	811, 1040, 1115, 1172, 1216
XmnI	GAANNNNTTC	1 cut(s)	803
XspI	CTAG	2 cut(s)	429, 699
Zsp2I	ATGCAT	2 cut(s)	278, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.