Rh7CG447700

Protein BPS1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003642
Physical Location & Seq
Reverse (-)
58893523 .. 58894705
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG447700.1

Sequence Viewer

Length: 1002 bp
ATGATTTCGCCGAAGGGTTCTCAAATGACTCCGAACCTTTCTGCACTGCTGAACACTTTTGAGGAAACATTGGCTGGGAGGTTGAGAAAGCTCAACCCAAAAGATAACAATGATGTCCTTAGCTTGTCATGGATGAAATTGGCAATGGAGTCGCTTTGTGGAACTCGTAATGACATAAAAACTCTCATAGCTGAGATTGATCTTCCCGTGAGTACTTGGGATGAGAAGTGGATTGATGTGTACTTGGACATCAGTGTAAAGTTGCTCGATATATGCATTGTCTTCAGCTCTGAGATCGCACGCTTAAACCAGGGGCATTTGTTTCTTCAGTTTGTGTTGCATAATTTGAATTCAGCCTCTTCGAAGCAATTTATTCGTGCCCGTTCTTCAGTTGATGACTGGAAGAATCATATTGCTTCAAAGAACCCCAGGGTTGAGAACTGTAGCACCATTTTGGACAAGCTTGTGGAATCACTGGATCTACCAAAGGTTAAGAACTCAGCAAAAGGGAAACTTTTAATGCGTGCTATGTATGGAGTGAAGGTGTTGACAGTATCTGTTTGTAGTGTCTTTGCCGCAGCCTTTTCTGTTTCTGCAAGCAAGTTGTTAGATTTGAATGTTGCCGAGACATATATGTGGGCACAAGCATTTAATGACTTACAGAGTAATGTAAATGGGGAAATTAGAAATGTACTTTCTAGTGGTAGAGTTACGGTACTGAAAGAGCTGGAAGCAGTTGATGGTATTGTGAAGCACTTGTATCCTATGATCCAAGATGACGTGGCCCTCGCAGAAGAAGAAGCATTCAAGAATTCTACTTCAGATTTAGAAAGGAAGGCACAGAATCTTTCCCAAGGACTTGATCTTCTGACCAAGGAAGTGGATGGGTTTTTCCAAATCCTTTTGACTGGACGCGATGCCTTGCTTTCTAAGCTGAGATCAGGTGGAGCAGTCTCTGACCGGATGCTGATGGGAAATGTAGAAGGGCAGGTTGTGAGGTGA

Protein Analysis

333

Amino Acids

36.94

Weight (kDa)

6.15

Isoelectric Point (pI)

26.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 17 - 119 1.7e-06 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 979
AccII CGCG 1 cut(s) 915
AciI CCGC 1 cut(s) 576
AclWI GGATC 2 cut(s) 486, 763
AcsI RAATTY 2 cut(s) 349, 811
AcuI CTGAAG 4 cut(s) 268, 311, 372, 804
AfaI GTAC 4 cut(s) 214, 242, 693, 717
AgsI TTSAA 4 cut(s) 349, 420, 616, 808
AjiI CACGTC 1 cut(s) 781
AjnI CCWGG 2 cut(s) 309, 428
AluBI AGCT 7 cut(s) 91, 123, 191, 288, 463, 727, 934
AluI AGCT 7 cut(s) 91, 123, 191, 288, 463, 727, 934
Alw26I GTCTC 2 cut(s) 620, 958
AlwI GGATC 2 cut(s) 486, 763
AlwNI CAGNNNCTG 2 cut(s) 557, 956
AoxI GGCC 1 cut(s) 783
ApeKI GCWGC 1 cut(s) 578
ApoI RAATTY 2 cut(s) 349, 811
AspS9I GGNCC 1 cut(s) 784
AsuII TTCGAA 1 cut(s) 362
BaeGI GKGCMC 2 cut(s) 382, 643
BbsI GAAGAC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 590
BccI CCATC 3 cut(s) 734, 878, 964
BcgI CGANNNNNNTGC 4 cut(s) 132, 166, 356, 390
BciT130I CCWGG 2 cut(s) 311, 430
BciVI GTATCC 1 cut(s) 771
BcoDI GTCTC 2 cut(s) 620, 958
BfaI CTAG 1 cut(s) 699
BfmI CTRYAG 1 cut(s) 442
BfuAI ACCTGC 1 cut(s) 979
BfuI GTATCC 1 cut(s) 771
BisI GCNGC 2 cut(s) 576, 579
BlsI GCNGC 2 cut(s) 577, 580
BmcAI AGTACT 1 cut(s) 214
Bme1390I CCNGG 2 cut(s) 311, 430
BmgBI CACGTC 1 cut(s) 781
BmgT120I GGNCC 1 cut(s) 784
BmrFI CCNGG 2 cut(s) 311, 430
BmsI GCATC 2 cut(s) 907, 954
BpiI GAAGAC 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 119
Bpu14I TTCGAA 1 cut(s) 362
BsaJI CCNNGG 5 cut(s) 310, 428, 429, 853, 873
BsaWI WCCGGW 1 cut(s) 960
BsaXI ACNNNNNCTCC 2 cut(s) 528, 558
Bse1I ACTGG 3 cut(s) 404, 480, 913
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 2 cut(s) 311, 430
BseDI CCNNGG 5 cut(s) 310, 428, 429, 853, 873
BseGI GGATG 4 cut(s) 138, 226, 889, 969
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 4 cut(s) 183, 282, 513, 926
BseNI ACTGG 3 cut(s) 404, 480, 913
BseSI GKGCMC 2 cut(s) 382, 643
BseXI GCAGC 1 cut(s) 590
BseYI CCCAGC 1 cut(s) 74
BsgI GTGCAG 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 915
BshFI GGCC 1 cut(s) 785
BsiSI CCGG 1 cut(s) 961
BsmAI GTCTC 2 cut(s) 620, 958
BsmI GAATGC 1 cut(s) 803
BsnI GGCC 1 cut(s) 785
Bsp119I TTCGAA 1 cut(s) 362
Bsp1286I GDGCHC 2 cut(s) 382, 643
Bsp143I GATC 6 cut(s) 199, 294, 478, 768, 862, 938
BspACI CCGC 1 cut(s) 576
BspANI GGCC 1 cut(s) 785
BspCNI CTCAG 4 cut(s) 184, 283, 512, 927
BspFNI CGCG 1 cut(s) 915
BspMI ACCTGC 1 cut(s) 979
BspPI GGATC 2 cut(s) 486, 763
BspT104I TTCGAA 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 3 cut(s) 404, 480, 913
BssECI CCNNGG 5 cut(s) 310, 428, 429, 853, 873
BssMI GATC 6 cut(s) 199, 294, 478, 768, 862, 938
BssT1I CCWWGG 2 cut(s) 853, 873
Bst2UI CCWGG 2 cut(s) 311, 430
Bst4CI ACNGT 3 cut(s) 443, 553, 715
Bst6I CTCTTC 1 cut(s) 364
BstBI TTCGAA 1 cut(s) 362
BstC8I GCNNGC 3 cut(s) 301, 525, 598
BstDEI CTNAG 6 cut(s) 119, 192, 291, 499, 930, 935
BstF5I GGATG 4 cut(s) 138, 226, 889, 969
BstFNI CGCG 1 cut(s) 915
BstKTI GATC 6 cut(s) 202, 297, 481, 771, 865, 941
BstMAI GTCTC 2 cut(s) 620, 958
BstMBI GATC 6 cut(s) 199, 294, 478, 768, 862, 938
BstMWI GCNNNNNNNGC 1 cut(s) 931
BstNI CCWGG 2 cut(s) 311, 430
BstSCI CCNGG 2 cut(s) 309, 428
BstSFI CTRYAG 1 cut(s) 442
BstSLI GKGCMC 2 cut(s) 382, 643
BstUI CGCG 1 cut(s) 915
BstV1I GCAGC 1 cut(s) 590
BstV2I GAAGAC 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 478
BstXI CCANNNNNNTGG 1 cut(s) 880
BstYI RGATCY 1 cut(s) 478
BsuI GTATCC 1 cut(s) 771
BsuRI GGCC 1 cut(s) 785
BtgZI GCGATG 1 cut(s) 930
BtrI CACGTC 1 cut(s) 781
BtsCI GGATG 4 cut(s) 138, 226, 889, 969
BtsI GCAGTG 1 cut(s) 44
BtsIMutI CAGTG 3 cut(s) 44, 259, 473
BveI ACCTGC 1 cut(s) 979
Cac8I GCNNGC 3 cut(s) 301, 525, 598
CaiI CAGNNNCTG 2 cut(s) 557, 956
Cfr13I GGNCC 1 cut(s) 784
CseI GACGC 1 cut(s) 921
Csp6I GTAC 4 cut(s) 213, 241, 692, 716
CviAII CATG 1 cut(s) 129
CviQI GTAC 4 cut(s) 213, 241, 692, 716
DdeI CTNAG 6 cut(s) 119, 192, 291, 499, 930, 935
DpnI GATC 6 cut(s) 201, 296, 480, 770, 864, 940
DpnII GATC 6 cut(s) 199, 294, 478, 768, 862, 938
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
Eco130I CCWWGG 2 cut(s) 853, 873
Eco57I CTGAAG 4 cut(s) 268, 311, 372, 804
EcoRI GAATTC 2 cut(s) 349, 811
EcoRII CCWGG 2 cut(s) 309, 428
EcoT14I CCWWGG 2 cut(s) 853, 873
EcoT22I ATGCAT 1 cut(s) 278
ErhI CCWWGG 2 cut(s) 853, 873
FaeI CATG 1 cut(s) 132
FalI AAGNNNNNCTT 2 cut(s) 498, 530
FatI CATG 1 cut(s) 128
Fnu4HI GCNGC 2 cut(s) 576, 579
FokI GGATG 4 cut(s) 145, 233, 896, 976
Fsp4HI GCNGC 2 cut(s) 576, 579
FspBI CTAG 1 cut(s) 699
GluI GCNGC 2 cut(s) 576, 579
GsaI CCCAGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 785
HapII CCGG 1 cut(s) 961
HgaI GACGC 1 cut(s) 921
Hin1II CATG 1 cut(s) 132
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 5 cut(s) 28, 149, 406, 470, 844
HpaII CCGG 1 cut(s) 961
Hpy166II GTNNAC 2 cut(s) 241, 549
Hpy188I TCNGA 5 cut(s) 33, 292, 823, 870, 958
Hpy188III TCNNGA 1 cut(s) 808
Hpy8I GTNNAC 2 cut(s) 241, 549
HpyAV CCTTC 4 cut(s) 7, 535, 829, 977
HpyCH4III ACNGT 3 cut(s) 443, 553, 715
HpyCH4IV ACGT 1 cut(s) 780
HpyCH4V TGCA 4 cut(s) 44, 276, 340, 596
HpyF10VI GCNNNNNNNGC 1 cut(s) 931
HpyF3I CTNAG 6 cut(s) 119, 192, 291, 499, 930, 935
HpySE526I ACGT 1 cut(s) 780
Hsp92II CATG 1 cut(s) 132
Kzo9I GATC 6 cut(s) 199, 294, 478, 768, 862, 938
LmnI GCTCC 1 cut(s) 947
Lsp1109I GCAGC 1 cut(s) 590
LweI GCATC 2 cut(s) 907, 954
MaeI CTAG 1 cut(s) 699
MaeII ACGT 1 cut(s) 780
MaeIII GTNAC 1 cut(s) 709
MalI GATC 6 cut(s) 201, 296, 480, 770, 864, 940
MboI GATC 6 cut(s) 199, 294, 478, 768, 862, 938
MboII GAAGA 9 cut(s) 194, 274, 317, 351, 378, 415, 806, 809, 857
MflI RGATCY 1 cut(s) 478
MhlI GDGCHC 2 cut(s) 382, 643
MluCI AATT 6 cut(s) 137, 343, 349, 368, 681, 811
MlyI GAGTC 2 cut(s) 22, 158
MnlI CCTC 5 cut(s) 55, 72, 367, 797, 990
Mph1103I ATGCAT 1 cut(s) 278
MseI TTAA 4 cut(s) 305, 492, 518, 651
MslI CAYNNNNRTG 1 cut(s) 634
MspI CCGG 1 cut(s) 961
MspR9I CCNGG 2 cut(s) 311, 430
Mva1269I GAATGC 1 cut(s) 803
MvaI CCWGG 2 cut(s) 311, 430
MvnI CGCG 1 cut(s) 915
MwoI GCNNNNNNNGC 1 cut(s) 931
NdeII GATC 6 cut(s) 199, 294, 478, 768, 862, 938
NlaIII CATG 1 cut(s) 132
NmeAIII GCCGAG 1 cut(s) 649
NsiI ATGCAT 1 cut(s) 278
NspV TTCGAA 1 cut(s) 362
PasI CCCWGGG 1 cut(s) 429
PctI GAATGC 1 cut(s) 803
PfeI GAWTC 3 cut(s) 406, 470, 844
PkrI GCNGC 2 cut(s) 577, 580
PleI GAGTC 2 cut(s) 22, 157
PpsI GAGTC 2 cut(s) 22, 157
Psp6I CCWGG 2 cut(s) 309, 428
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 2 cut(s) 309, 428
PspPI GGNCC 1 cut(s) 784
PstNI CAGNNNCTG 2 cut(s) 557, 956
PsuI RGATCY 1 cut(s) 478
RsaI GTAC 4 cut(s) 214, 242, 693, 717
RsaNI GTAC 4 cut(s) 213, 241, 692, 716
RseI CAYNNNNRTG 1 cut(s) 634
SaqAI TTAA 4 cut(s) 305, 492, 518, 651
SatI GCNGC 2 cut(s) 576, 579
Sau3AI GATC 6 cut(s) 199, 294, 478, 768, 862, 938
Sau96I GGNCC 1 cut(s) 784
ScaI AGTACT 1 cut(s) 214
SchI GAGTC 2 cut(s) 22, 158
ScrFI CCNGG 2 cut(s) 311, 430
SduI GDGCHC 2 cut(s) 382, 643
SfaNI GCATC 2 cut(s) 907, 954
SfcI CTRYAG 1 cut(s) 442
SfuI TTCGAA 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 634
Sse9I AATT 6 cut(s) 137, 343, 349, 368, 681, 811
SsiI CCGC 1 cut(s) 576
SspMI CTAG 1 cut(s) 699
StyD4I CCNGG 2 cut(s) 309, 428
StyI CCWWGG 2 cut(s) 853, 873
TaaI ACNGT 3 cut(s) 443, 553, 715
TaiI ACGT 1 cut(s) 783
TaqI TCGA 2 cut(s) 267, 362
TasI AATT 6 cut(s) 137, 343, 349, 368, 681, 811
TatI WGTACW 3 cut(s) 212, 240, 691
TauI GCSGC 1 cut(s) 578
TfiI GAWTC 3 cut(s) 406, 470, 844
Tru1I TTAA 4 cut(s) 305, 492, 518, 651
Tru9I TTAA 4 cut(s) 305, 492, 518, 651
TscAI CASTG 3 cut(s) 51, 259, 480
TseI GCWGC 1 cut(s) 578
TspDTI ATGAA 1 cut(s) 149
TspRI CASTG 3 cut(s) 51, 259, 480
XapI RAATTY 2 cut(s) 349, 811
XspI CTAG 1 cut(s) 699
ZrmI AGTACT 1 cut(s) 214
Zsp2I ATGCAT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.