Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002070.1

Orthogroup ID

OG0003642

Physical Location & Seq

Genomic Coordinates Reverse (-)

266263 .. 268126

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002070.1_g000062.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atggcatctgcaggtgctctgactgcccagattcaccagaccaaggctccattgcttgaagaggttcccaagatgcagagattggctgtaaagaagtcgctttgtggaactcgtaatgacataaaaactctcatagctgagattgatcttcccgtgagtgcttgggatgagaagtggattgatgtgtacttggacatcagtgtaaagttgctcgatatatgcattgtcttcagctctgagatcgtacgcttaaaccaggggcatttgtttcttcagtttgtgttgcataatttgaattcagcctattcgaagcaatttattcgtgcccgttcttcagttgatgactggaagaatcatattgcttcaaagaaccccagggttgagaactgtagcaccattttggacaagcttgtggaatcactggatctaccaaaggttaagaactcagcaaaagggaaacttttaatgtgtcctatgtatggagtgaaggtgttgacagtatctttttgtaatgtctttgccgcagccttttctagttctgcaagcaagttgttagatttgaatgttgccgagacatatatgtgggcacaagcatttaatgacttacagagtaatgtaaatggggaaattagaaatgtactttctagtggtagagttacggtactgaaagagctggaagcagttgatggtattgtgaagcacttgtatcctatgatccaagatgacgtggccctcgcagaagaagaagcattcaagaattctacttcagatttagaaaggaaggcacataatctttcccaaggacttgatcttctgactaaggaagtggatgtgtttttccaaatccttttgactggacgcgaagccttgctttctaagctgagatcaggtggagcagtctctgaccagatgatgatgggaaatgtagaagggcaggttgtgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

315

Amino Acids

34.96

Weight (kDa)

6.33

Isoelectric Point (pI)

28.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46080
fragaria_vesca	FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070 FvH4_7g15070
malus_domestica	MD00G1111800.v1.1 MD01G1069200.v1.1
prunus_persica	Prupe.2G175300_v2.0.a1
pyrus_communis	pycom01g09860 pycom07g12990
rosa_chinensis	RchiOBHm_Chr1g0357181 RchiOBHm_Chr2g0136331 RchiOBHm_Chr2g0151201 RchiOBHm_Chr7g0201911
rosa_laevigata	RLG00000028046
rosa_multiflora	Rmu_sc0002070.1_g000062 Rmu_sc0006976.1_g000011
rosa_roxburghii	Rroxscaffold_4G00299010
rosa_rugosa	Rorug01G0254600 Rorug01G0254700 Rorug02G0231200
rosa_samantha	Rh1AG268900 Rh1BG236600 Rh1CG247100 Rh1CG252600 Rh1DG263700 Rh2AG259500 Rh5AG212900 Rh5DG553600 Rh7AG428800 Rh7CG447700
rosa_wichuraiana	Rw1G023330 Rw1G023730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2
Acc36I	ACCTGC	2 cut(s)	2, 925
AccII	CGCG	1 cut(s)	861
AciI	CCGC	1 cut(s)	522
AclWI	GGATC	2 cut(s)	432, 709
AcsI	RAATTY	2 cut(s)	295, 757
AcuI	CTGAAG	4 cut(s)	214, 257, 318, 750
AfaI	GTAC	4 cut(s)	188, 246, 639, 663
AfiI	CCNNNNNNNGG	2 cut(s)	43, 479
AgsI	TTSAA	5 cut(s)	59, 295, 366, 562, 754
AjiI	CACGTC	1 cut(s)	727
AjnI	CCWGG	2 cut(s)	255, 374
AluBI	AGCT	5 cut(s)	137, 234, 409, 673, 880
AluI	AGCT	5 cut(s)	137, 234, 409, 673, 880
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	566, 904
AlwI	GGATC	2 cut(s)	432, 709
AlwNI	CAGNNNCTG	1 cut(s)	902
AoxI	GGCC	1 cut(s)	729
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	2 cut(s)	295, 757
Asp700I	GAANNNNTTC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	730
AsuHPI	GGTGA	1 cut(s)	26
AsuII	TTCGAA	1 cut(s)	308
BaeGI	GKGCMC	2 cut(s)	328, 589
BbsI	GAAGAC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	536
BccI	CCATC	2 cut(s)	680, 910
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BciT130I	CCWGG	2 cut(s)	257, 376
BciVI	GTATCC	1 cut(s)	717
BcoDI	GTCTC	2 cut(s)	566, 904
BfaI	CTAG	2 cut(s)	534, 645
BfmI	CTRYAG	2 cut(s)	9, 388
BfuAI	ACCTGC	2 cut(s)	2, 925
BfuI	GTATCC	1 cut(s)	717
BisI	GCNGC	2 cut(s)	522, 525
BlsI	GCNGC	2 cut(s)	523, 526
Bme1390I	CCNGG	2 cut(s)	257, 376
BmgBI	CACGTC	1 cut(s)	727
BmgT120I	GGNCC	1 cut(s)	730
BmiI	GGNNCC	2 cut(s)	48, 66
BmrFI	CCNGG	2 cut(s)	257, 376
BmsI	GCATC	2 cut(s)	14, 63
BpiI	GAAGAC	1 cut(s)	220
Bpu14I	TTCGAA	1 cut(s)	308
BsaJI	CCNNGG	5 cut(s)	42, 256, 374, 375, 799
BsaXI	ACNNNNNCTCC	4 cut(s)	31, 61, 474, 504
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 479
Bse1I	ACTGG	3 cut(s)	350, 426, 859
Bse3DI	GCAATG	1 cut(s)	50
BseBI	CCWGG	2 cut(s)	257, 376
BseDI	CCNNGG	5 cut(s)	42, 256, 374, 375, 799
BseGI	GGATG	2 cut(s)	172, 835
BseLI	CCNNNNNNNGG	2 cut(s)	43, 479
BseMI	GCAATG	1 cut(s)	50
BseMII	CTCAG	4 cut(s)	129, 228, 459, 872
BseNI	ACTGG	3 cut(s)	350, 426, 859
BseSI	GKGCMC	2 cut(s)	328, 589
BseXI	GCAGC	1 cut(s)	536
Bsh1236I	CGCG	1 cut(s)	861
BshFI	GGCC	1 cut(s)	731
BsiHKAI	GWGCWC	1 cut(s)	19
BsiWI	CGTACG	1 cut(s)	244
BslI	CCNNNNNNNGG	2 cut(s)	43, 479
BsmAI	GTCTC	2 cut(s)	566, 904
BsmI	GAATGC	1 cut(s)	749
BsnI	GGCC	1 cut(s)	731
Bsp119I	TTCGAA	1 cut(s)	308
Bsp1286I	GDGCHC	3 cut(s)	19, 328, 589
Bsp143I	GATC	6 cut(s)	145, 240, 424, 714, 808, 884
BspACI	CCGC	1 cut(s)	522
BspANI	GGCC	1 cut(s)	731
BspCNI	CTCAG	4 cut(s)	130, 229, 458, 873
BspFNI	CGCG	1 cut(s)	861
BspLI	GGNNCC	2 cut(s)	48, 66
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	2 cut(s)	2, 925
BspPI	GGATC	2 cut(s)	432, 709
BspT104I	TTCGAA	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	50
BsrI	ACTGG	3 cut(s)	350, 426, 859
BssECI	CCNNGG	5 cut(s)	42, 256, 374, 375, 799
BssMI	GATC	6 cut(s)	145, 240, 424, 714, 808, 884
BssT1I	CCWWGG	2 cut(s)	42, 799
Bst2UI	CCWGG	2 cut(s)	257, 376
Bst4CI	ACNGT	3 cut(s)	389, 499, 661
Bst6I	CTCTTC	1 cut(s)	54
BstBI	TTCGAA	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	544
BstDEI	CTNAG	6 cut(s)	138, 237, 445, 819, 876, 881
BstF5I	GGATG	2 cut(s)	172, 835
BstFNI	CGCG	1 cut(s)	861
BstKTI	GATC	6 cut(s)	148, 243, 427, 717, 811, 887
BstMAI	GTCTC	2 cut(s)	566, 904
BstMBI	GATC	6 cut(s)	145, 240, 424, 714, 808, 884
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 877
BstNI	CCWGG	2 cut(s)	257, 376
BstSCI	CCNGG	2 cut(s)	255, 374
BstSFI	CTRYAG	2 cut(s)	9, 388
BstSLI	GKGCMC	2 cut(s)	328, 589
BstUI	CGCG	1 cut(s)	861
BstV1I	GCAGC	1 cut(s)	536
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BsuI	GTATCC	1 cut(s)	717
BsuRI	GGCC	1 cut(s)	731
BtrI	CACGTC	1 cut(s)	727
BtsCI	GGATG	2 cut(s)	172, 835
BtsIMutI	CAGTG	2 cut(s)	205, 419
BveI	ACCTGC	2 cut(s)	2, 925
Cac8I	GCNNGC	1 cut(s)	544
CaiI	CAGNNNCTG	1 cut(s)	902
Cfr13I	GGNCC	1 cut(s)	730
CseI	GACGC	1 cut(s)	867
Csp6I	GTAC	4 cut(s)	187, 245, 638, 662
CviQI	GTAC	4 cut(s)	187, 245, 638, 662
DdeI	CTNAG	6 cut(s)	138, 237, 445, 819, 876, 881
DpnI	GATC	6 cut(s)	147, 242, 426, 716, 810, 886
DpnII	GATC	6 cut(s)	145, 240, 424, 714, 808, 884
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	2 cut(s)	42, 799
Eco57I	CTGAAG	4 cut(s)	214, 257, 318, 750
EcoRI	GAATTC	2 cut(s)	295, 757
EcoRII	CCWGG	2 cut(s)	255, 374
EcoT14I	CCWWGG	2 cut(s)	42, 799
EcoT22I	ATGCAT	1 cut(s)	224
ErhI	CCWWGG	2 cut(s)	42, 799
FalI	AAGNNNNNCTT	4 cut(s)	444, 476, 855, 887
Fnu4HI	GCNGC	2 cut(s)	522, 525
FokI	GGATG	2 cut(s)	179, 842
Fsp4HI	GCNGC	2 cut(s)	522, 525
FspBI	CTAG	2 cut(s)	534, 645
GluI	GCNGC	2 cut(s)	522, 525
HaeIII	GGCC	1 cut(s)	731
HgaI	GACGC	1 cut(s)	867
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	3 cut(s)	31, 352, 416
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	2 cut(s)	187, 495
Hpy188I	TCNGA	5 cut(s)	21, 238, 769, 816, 904
Hpy188III	TCNNGA	1 cut(s)	754
Hpy8I	GTNNAC	2 cut(s)	187, 495
HpyAV	CCTTC	3 cut(s)	481, 775, 923
HpyCH4III	ACNGT	3 cut(s)	389, 499, 661
HpyCH4IV	ACGT	1 cut(s)	726
HpyCH4V	TGCA	5 cut(s)	11, 76, 222, 286, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 877
HpyF3I	CTNAG	6 cut(s)	138, 237, 445, 819, 876, 881
HpySE526I	ACGT	1 cut(s)	726
Kzo9I	GATC	6 cut(s)	145, 240, 424, 714, 808, 884
LmnI	GCTCC	2 cut(s)	52, 893
Lsp1109I	GCAGC	1 cut(s)	536
LweI	GCATC	2 cut(s)	14, 63
MaeI	CTAG	2 cut(s)	534, 645
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	6 cut(s)	147, 242, 426, 716, 810, 886
MboI	GATC	6 cut(s)	145, 240, 424, 714, 808, 884
MboII	GAAGA	9 cut(s)	71, 140, 220, 263, 324, 361, 752, 755, 803
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	3 cut(s)	19, 328, 589
MluCI	AATT	5 cut(s)	289, 295, 314, 627, 757
MnlI	CCTC	3 cut(s)	55, 743, 936
Mph1103I	ATGCAT	1 cut(s)	224
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	4 cut(s)	251, 438, 464, 597
MslI	CAYNNNNRTG	1 cut(s)	580
MspR9I	CCNGG	2 cut(s)	257, 376
Mva1269I	GAATGC	1 cut(s)	749
MvaI	CCWGG	2 cut(s)	257, 376
MvnI	CGCG	1 cut(s)	861
MwoI	GCNNNNNNNGC	2 cut(s)	23, 877
NdeII	GATC	6 cut(s)	145, 240, 424, 714, 808, 884
NlaIV	GGNNCC	2 cut(s)	48, 66
NmeAIII	GCCGAG	1 cut(s)	595
NsiI	ATGCAT	1 cut(s)	224
NspV	TTCGAA	1 cut(s)	308
PaqCI	CACCTGC	1 cut(s)	2
PasI	CCCWGGG	1 cut(s)	375
PctI	GAATGC	1 cut(s)	749
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	3 cut(s)	31, 352, 416
Pfl23II	CGTACG	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	523, 526
Psp6I	CCWGG	2 cut(s)	255, 374
PspGI	CCWGG	2 cut(s)	255, 374
PspLI	CGTACG	1 cut(s)	244
PspN4I	GGNNCC	2 cut(s)	48, 66
PspPI	GGNCC	1 cut(s)	730
PstI	CTGCAG	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	902
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	4 cut(s)	188, 246, 639, 663
RsaNI	GTAC	4 cut(s)	187, 245, 638, 662
RseI	CAYNNNNRTG	1 cut(s)	580
SaqAI	TTAA	4 cut(s)	251, 438, 464, 597
SatI	GCNGC	2 cut(s)	522, 525
Sau3AI	GATC	6 cut(s)	145, 240, 424, 714, 808, 884
Sau96I	GGNCC	1 cut(s)	730
ScrFI	CCNGG	2 cut(s)	257, 376
SduI	GDGCHC	3 cut(s)	19, 328, 589
SfaNI	GCATC	2 cut(s)	14, 63
SfcI	CTRYAG	2 cut(s)	9, 388
SfuI	TTCGAA	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	580
Sse9I	AATT	5 cut(s)	289, 295, 314, 627, 757
SsiI	CCGC	1 cut(s)	522
SspMI	CTAG	2 cut(s)	534, 645
StyD4I	CCNGG	2 cut(s)	255, 374
StyI	CCWWGG	2 cut(s)	42, 799
TaaI	ACNGT	3 cut(s)	389, 499, 661
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	2 cut(s)	213, 308
TasI	AATT	5 cut(s)	289, 295, 314, 627, 757
TatI	WGTACW	2 cut(s)	186, 637
TauI	GCSGC	1 cut(s)	524
TfiI	GAWTC	3 cut(s)	31, 352, 416
Tru1I	TTAA	4 cut(s)	251, 438, 464, 597
Tru9I	TTAA	4 cut(s)	251, 438, 464, 597
TscAI	CASTG	2 cut(s)	205, 426
TseI	GCWGC	1 cut(s)	524
TspRI	CASTG	2 cut(s)	205, 426
XapI	RAATTY	2 cut(s)	295, 757
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	2 cut(s)	534, 645
Zsp2I	ATGCAT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.