AT2G46770
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005503
Physical Location & Seq
Reverse (-)
19220725 .. 19222916
2192 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46770.1

Sequence Viewer

Length: 1098 bp
ATGATGTCAAAATCTATGAGCATATCAGTGAACGGACAATCTCAAGTGCCTCCTGGGTTTAGGTTTCATCCGACCGAGGAAGAGCTGTTGCAGTATTATCTCCGGAAGAAAGTTAATAGCATCGAGATCGATCTTGATGTCATTCGCGACGTTGATCTCAACAAGCTCGAGCCTTGGGACATTCAAGAGATGTGTAAAATAGGAACAACGCCACAAAACGACTGGTATTTCTTTAGCCACAAGGACAAAAAATATCCGACGGGAACGAGAACTAACAGAGCCACTGCGGCTGGATTTTGGAAAGCAACTGGCCGCGACAAGATCATATATAGCAATGGCCGTAGAATTGGGATGAGAAAGACTCTTGTTTTCTACAAAGGCCGAGCTCCTCACGGCCAAAAATCTGATTGGATCATGCATGAATATAGACTCGATGACAACATTATTTCCCCCGAGGATGTCACCGTTCATGAGGTCGTGAGTATTATAGGGGAAGCATCACAAGACGAAGGATGGGTGGTGTGTCGTATTTTCAAGAAGAAGAATCTTCACAAAACCCTAAACAGTCCCGTCGGAGGAGCTTCCCTGAGCGGCGGCGGAGATACGCCGAAGACGACATCATCTCAGATCTTCAACGAGGATACTCTCGACCAATTTCTTGAACTTATGGGGAGATCTTGTAAAGAAGAGCTAAATCTTGACCCTTTCATGAAACTCCCAAACCTCGAAAGCCCTAACAGTCAGGCAATCAACAACTGCCACGTAAGCTCTCCCGACACTAATCATAATATCCACGTCAGCAACGTGGTCGACACTAGCTTTGTTACTAGCTGGGCGGCTTTAGACCGCCTCGTGGCCTCGCAGCTTAACGGACCCACATCATATTCAATTACAGCCGTCAATGAGAGCCACGTGGGCCATGATCATCTCGCTTTGCCTTCCGTCCGATCTCCGTACCCCAGCCTAAACCGGTCCGCTTCGTACCACGCCGGTTTAACACAGGAATATACACCGGAGATGGAGCTATGGAATACGACGACGTCGTCTCTATCGTCATCGCCTGGCCCATTTTGTCACGTGTCGAATGGTAGTGGATAA

Protein Analysis

365

Amino Acids

40.78

Weight (kDa)

6.27

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 17 - 144 3.1e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1042
AatII GACGTC 1 cut(s) 1043
AccBSI CCGCTC 1 cut(s) 591
AccI GTMKAC 1 cut(s) 810
AccII CGCG 2 cut(s) 147, 315
AccIII TCCGGA 1 cut(s) 102
AciI CCGC 8 cut(s) 287, 313, 591, 594, 597, 836, 847, 975
AclWI GGATC 1 cut(s) 419
AcoI YGGCCR 3 cut(s) 310, 337, 394
AcvI CACGTG 2 cut(s) 913, 1078
AcyI GRCGYC 1 cut(s) 1040
AfaI GTAC 2 cut(s) 956, 983
AfiI CCNNNNNNNGG 2 cut(s) 575, 853
AflIII ACRYGT 1 cut(s) 1077
AgeI ACCGGT 1 cut(s) 969
AgsI TTSAA 5 cut(s) 185, 535, 634, 662, 888
AjiI CACGTC 1 cut(s) 796
AjnI CCWGG 2 cut(s) 52, 1060
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 1 cut(s) 1050
AlwI GGATC 1 cut(s) 419
Ama87I CYCGRG 2 cut(s) 167, 452
Aor13HI TCCGGA 1 cut(s) 102
AoxI GGCC 7 cut(s) 310, 337, 379, 394, 855, 916, 1063
ApeKI GCWGC 1 cut(s) 862
ArsI GACNNNNNNTTYG 2 cut(s) 803, 835
AsiGI ACCGGT 1 cut(s) 969
AspS9I GGNCC 4 cut(s) 872, 916, 972, 1064
AsuHPI GGTGA 1 cut(s) 454
AvaI CYCGRG 2 cut(s) 167, 452
AvaII GGWCC 2 cut(s) 872, 972
BanII GRGCYC 1 cut(s) 388
BauI CACGAG 1 cut(s) 851
BbrPI CACGTG 2 cut(s) 913, 1078
BbsI GAAGAC 1 cut(s) 617
Bbv12I GWGCWC 1 cut(s) 388
BbvI GCAGC 1 cut(s) 874
BccI CCATC 2 cut(s) 507, 1012
BceAI ACGGC 3 cut(s) 324, 409, 881
BcgI CGANNNNNNTGC 4 cut(s) 109, 143, 790, 824
BciT130I CCWGG 2 cut(s) 54, 1062
BciVI GTATCC 1 cut(s) 634
BclI TGATCA 1 cut(s) 922
BcoDI GTCTC 1 cut(s) 1050
BfaI CTAG 2 cut(s) 816, 828
BfuI GTATCC 1 cut(s) 634
BglI GCCNNNNNGGC 2 cut(s) 287, 915
BglII AGATCT 2 cut(s) 627, 674
BisI GCNGC 6 cut(s) 288, 313, 592, 595, 837, 863
BlsI GCNGC 6 cut(s) 289, 314, 593, 596, 838, 864
Bme1390I CCNGG 2 cut(s) 54, 1062
Bme18I GGWCC 2 cut(s) 872, 972
BmeT110I CYCGRG 2 cut(s) 167, 452
BmgBI CACGTC 1 cut(s) 796
BmgT120I GGNCC 4 cut(s) 872, 916, 972, 1064
BmiI GGNNCC 1 cut(s) 874
BmrFI CCNGG 2 cut(s) 54, 1062
BmsI GCATC 2 cut(s) 129, 506
BpiI GAAGAC 1 cut(s) 617
BplI GAGNNNNNCTC 2 cut(s) 346, 378
Bpu10I CCTNAGC 1 cut(s) 587
BpuEI CTTGAG 1 cut(s) 27
Bsa29I ATCGAT 1 cut(s) 129
BsaAI YACGTR 3 cut(s) 763, 913, 1078
BsaHI GRCGYC 1 cut(s) 1040
BsaJI CCNNGG 4 cut(s) 53, 75, 173, 453
BsaWI WCCGGW 3 cut(s) 102, 969, 1012
BsaXI ACNNNNNCTCC 2 cut(s) 664, 694
Bsc4I CCNNNNNNNGG 2 cut(s) 575, 853
Bse118I RCCGGY 2 cut(s) 969, 989
Bse1I ACTGG 2 cut(s) 227, 313
Bse3DI GCAATG 1 cut(s) 340
BseAI TCCGGA 1 cut(s) 102
BseBI CCWGG 2 cut(s) 54, 1062
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 4 cut(s) 53, 75, 173, 453
BseGI GGATG 4 cut(s) 67, 357, 463, 518
BseLI CCNNNNNNNGG 2 cut(s) 575, 853
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 2 cut(s) 578, 638
BseNI ACTGG 2 cut(s) 227, 313
BseRI GAGGAG 2 cut(s) 378, 591
BseXI GCAGC 1 cut(s) 874
BseYI CCCAGC 2 cut(s) 831, 959
Bsh1236I CGCG 2 cut(s) 147, 315
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 7 cut(s) 312, 339, 381, 396, 857, 918, 1065
BshTI ACCGGT 1 cut(s) 969
BshVI ATCGAT 1 cut(s) 129
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 388
BsiHKCI CYCGRG 2 cut(s) 167, 452
BsiSI CCGG 4 cut(s) 103, 970, 990, 1013
BslFI GGGAC 2 cut(s) 191, 552
BslI CCNNNNNNNGG 2 cut(s) 575, 853
BsmAI GTCTC 1 cut(s) 1050
BsmBI CGTCTC 1 cut(s) 1050
BsmFI GGGAC 2 cut(s) 191, 552
BsnI GGCC 7 cut(s) 312, 339, 381, 396, 857, 918, 1065
BsoBI CYCGRG 2 cut(s) 167, 452
Bsp1286I GDGCHC 1 cut(s) 388
Bsp13I TCCGGA 1 cut(s) 102
Bsp143I GATC 9 cut(s) 126, 130, 154, 321, 411, 627, 674, 922, 947
Bsp68I TCGCGA 1 cut(s) 147
BspACI CCGC 8 cut(s) 287, 313, 591, 594, 597, 836, 847, 975
BspANI GGCC 7 cut(s) 312, 339, 381, 396, 857, 918, 1065
BspCNI CTCAG 2 cut(s) 579, 637
BspDI ATCGAT 1 cut(s) 129
BspEI TCCGGA 1 cut(s) 102
BspFNI CGCG 2 cut(s) 147, 315
BspHI TCATGA 2 cut(s) 469, 708
BspLI GGNNCC 1 cut(s) 874
BspPI GGATC 1 cut(s) 419
BspQI GCTCTTC 2 cut(s) 75, 681
BsrBI CCGCTC 1 cut(s) 591
BsrDI GCAATG 1 cut(s) 340
BsrFI RCCGGY 2 cut(s) 969, 989
BsrI ACTGG 2 cut(s) 227, 313
BssAI RCCGGY 2 cut(s) 969, 989
BssECI CCNNGG 4 cut(s) 53, 75, 173, 453
BssMI GATC 9 cut(s) 126, 130, 154, 321, 411, 627, 674, 922, 947
BssNI GRCGYC 1 cut(s) 1040
BssSI CACGAG 1 cut(s) 851
BssT1I CCWWGG 1 cut(s) 173
Bst2BI CACGAG 1 cut(s) 851
Bst2UI CCWGG 2 cut(s) 54, 1062
Bst4CI ACNGT 3 cut(s) 466, 566, 740
Bst6I CTCTTC 2 cut(s) 75, 681
BstACI GRCGYC 1 cut(s) 1040
BstBAI YACGTR 3 cut(s) 763, 913, 1078
BstDEI CTNAG 2 cut(s) 587, 624
BstF5I GGATG 4 cut(s) 67, 357, 463, 518
BstFNI CGCG 2 cut(s) 147, 315
BstKTI GATC 9 cut(s) 129, 133, 157, 324, 414, 630, 677, 925, 950
BstMAI GTCTC 1 cut(s) 1050
BstMBI GATC 9 cut(s) 126, 130, 154, 321, 411, 627, 674, 922, 947
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 3 cut(s) 287, 765, 915
BstNI CCWGG 2 cut(s) 54, 1062
BstSCI CCNGG 2 cut(s) 52, 1060
BstUI CGCG 2 cut(s) 147, 315
BstV1I GCAGC 1 cut(s) 874
BstV2I GAAGAC 1 cut(s) 617
BstX2I RGATCY 2 cut(s) 627, 674
BstYI RGATCY 2 cut(s) 627, 674
Bsu15I ATCGAT 1 cut(s) 129
BsuI GTATCC 1 cut(s) 634
BsuRI GGCC 7 cut(s) 312, 339, 381, 396, 857, 918, 1065
BsuTUI ATCGAT 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 1041
BtrI CACGTC 1 cut(s) 796
BtsCI GGATG 4 cut(s) 67, 357, 463, 518
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 33, 282
BtuMI TCGCGA 1 cut(s) 147
CciI TCATGA 2 cut(s) 469, 708
Cfr10I RCCGGY 2 cut(s) 969, 989
Cfr13I GGNCC 4 cut(s) 872, 916, 972, 1064
ClaI ATCGAT 1 cut(s) 129
CpoI CGGWCCG 1 cut(s) 972
Csp6I GTAC 2 cut(s) 955, 982
CspAI ACCGGT 1 cut(s) 969
CspI CGGWCCG 1 cut(s) 972
CviAII CATG 5 cut(s) 415, 419, 470, 709, 920
CviQI GTAC 2 cut(s) 955, 982
DdeI CTNAG 2 cut(s) 587, 624
DpnI GATC 9 cut(s) 128, 132, 156, 323, 413, 629, 676, 924, 949
DpnII GATC 9 cut(s) 126, 130, 154, 321, 411, 627, 674, 922, 947
DrdI GACNNNNNNGTC 1 cut(s) 1042
DseDI GACNNNNNNGTC 1 cut(s) 1042
EaeI YGGCCR 3 cut(s) 310, 337, 394
Eam1104I CTCTTC 2 cut(s) 75, 681
EarI CTCTTC 2 cut(s) 75, 681
EciI GGCGGA 1 cut(s) 612
Ecl136II GAGCTC 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 388
Eco47I GGWCC 2 cut(s) 872, 972
Eco53kI GAGCTC 1 cut(s) 386
Eco72I CACGTG 2 cut(s) 913, 1078
Eco88I CYCGRG 2 cut(s) 167, 452
EcoICRI GAGCTC 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 52, 1060
EcoT14I CCWWGG 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 420
EcoT38I GRGCYC 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 173
Esp3I CGTCTC 1 cut(s) 1050
FaeI CATG 5 cut(s) 418, 422, 473, 712, 923
FaqI GGGAC 2 cut(s) 191, 552
FatI CATG 5 cut(s) 414, 418, 469, 708, 919
FbaI TGATCA 1 cut(s) 922
FblI GTMKAC 1 cut(s) 810
Fnu4HI GCNGC 6 cut(s) 288, 313, 592, 595, 837, 863
FokI GGATG 4 cut(s) 54, 364, 470, 525
FriOI GRGCYC 1 cut(s) 388
Fsp4HI GCNGC 6 cut(s) 288, 313, 592, 595, 837, 863
FspBI CTAG 2 cut(s) 816, 828
GluI GCNGC 6 cut(s) 288, 313, 592, 595, 837, 863
GsaI CCCAGC 2 cut(s) 835, 963
HaeIII GGCC 7 cut(s) 312, 339, 381, 396, 857, 918, 1065
HapII CCGG 4 cut(s) 103, 970, 990, 1013
Hin1I GRCGYC 1 cut(s) 1040
Hin1II CATG 5 cut(s) 418, 422, 473, 712, 923
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HinfI GANTC 3 cut(s) 361, 429, 544
HpaII CCGG 4 cut(s) 103, 970, 990, 1013
HphI GGTGA 1 cut(s) 454
Hpy166II GTNNAC 2 cut(s) 31, 811
Hpy188I TCNGA 6 cut(s) 72, 258, 406, 575, 627, 947
Hpy8I GTNNAC 2 cut(s) 31, 811
Hpy99I CGWCG 6 cut(s) 152, 262, 575, 1039, 1042, 1045
HpyAV CCTTC 2 cut(s) 503, 948
HpyCH4III ACNGT 3 cut(s) 466, 566, 740
HpyCH4IV ACGT 7 cut(s) 150, 762, 795, 804, 912, 1040, 1077
HpyCH4V TGCA 2 cut(s) 91, 418
HpyF10VI GCNNNNNNNGC 3 cut(s) 287, 765, 915
HpyF3I CTNAG 2 cut(s) 587, 624
HpySE526I ACGT 7 cut(s) 150, 762, 795, 804, 912, 1040, 1077
Hsp92I GRCGYC 1 cut(s) 1040
Hsp92II CATG 5 cut(s) 418, 422, 473, 712, 923
Kpn2I TCCGGA 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 922
Kzo9I GATC 9 cut(s) 126, 130, 154, 321, 411, 627, 674, 922, 947
LguI GCTCTTC 2 cut(s) 75, 681
LmnI GCTCC 3 cut(s) 391, 578, 1021
Lsp1109I GCAGC 1 cut(s) 874
LweI GCATC 2 cut(s) 129, 506
MaeI CTAG 2 cut(s) 816, 828
MaeII ACGT 7 cut(s) 150, 762, 795, 804, 912, 1040, 1077
MaeIII GTNAC 3 cut(s) 460, 823, 1073
MalI GATC 9 cut(s) 128, 132, 156, 323, 413, 629, 676, 924, 949
MbiI CCGCTC 1 cut(s) 591
MboI GATC 9 cut(s) 126, 130, 154, 321, 411, 627, 674, 922, 947
MboII GAAGA 8 cut(s) 92, 118, 539, 550, 553, 622, 622, 698
MflI RGATCY 2 cut(s) 627, 674
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 3 cut(s) 345, 653, 888
MlyI GAGTC 2 cut(s) 355, 423
MmeI TCCRAC 3 cut(s) 95, 281, 553
Mph1103I ATGCAT 1 cut(s) 420
MroI TCCGGA 1 cut(s) 102
MseI TTAA 3 cut(s) 114, 867, 995
MslI CAYNNNNRTG 1 cut(s) 26
MspI CCGG 4 cut(s) 103, 970, 990, 1013
MspR9I CCNGG 2 cut(s) 54, 1062
MvaI CCWGG 2 cut(s) 54, 1062
MvnI CGCG 2 cut(s) 147, 315
MwoI GCNNNNNNNGC 3 cut(s) 287, 765, 915
NdeII GATC 9 cut(s) 126, 130, 154, 321, 411, 627, 674, 922, 947
NlaIII CATG 5 cut(s) 418, 422, 473, 712, 923
NlaIV GGNNCC 1 cut(s) 874
NmeAIII GCCGAG 1 cut(s) 407
NmuCI GTSAC 2 cut(s) 460, 1073
NruI TCGCGA 1 cut(s) 147
NsiI ATGCAT 1 cut(s) 420
PaeR7I CTCGAG 1 cut(s) 167
PagI TCATGA 2 cut(s) 469, 708
PciSI GCTCTTC 2 cut(s) 75, 681
PcsI WCGNNNNNNNCGW 4 cut(s) 611, 801, 1040, 1049
PfeI GAWTC 1 cut(s) 544
PflFI GACNNNGTC 2 cut(s) 1039, 1042
PinAI ACCGGT 1 cut(s) 969
PkrI GCNGC 6 cut(s) 289, 314, 593, 596, 838, 864
PleI GAGTC 2 cut(s) 355, 423
PmaCI CACGTG 2 cut(s) 913, 1078
PmlI CACGTG 2 cut(s) 913, 1078
PpsI GAGTC 2 cut(s) 355, 423
Ppu21I YACGTR 3 cut(s) 763, 913, 1078
Psp124BI GAGCTC 1 cut(s) 388
Psp6I CCWGG 2 cut(s) 52, 1060
PspCI CACGTG 2 cut(s) 913, 1078
PspFI CCCAGC 2 cut(s) 831, 959
PspGI CCWGG 2 cut(s) 52, 1060
PspN4I GGNNCC 1 cut(s) 874
PspPI GGNCC 4 cut(s) 872, 916, 972, 1064
PspXI VCTCGAGB 1 cut(s) 167
PsuI RGATCY 2 cut(s) 627, 674
PsyI GACNNNGTC 2 cut(s) 1039, 1042
RruI TCGCGA 1 cut(s) 147
RsaI GTAC 2 cut(s) 956, 983
RsaNI GTAC 2 cut(s) 955, 982
RseI CAYNNNNRTG 1 cut(s) 26
Rsr2I CGGWCCG 1 cut(s) 972
RsrII CGGWCCG 1 cut(s) 972
SacI GAGCTC 1 cut(s) 388
SalI GTCGAC 1 cut(s) 809
SapI GCTCTTC 2 cut(s) 75, 681
SaqAI TTAA 3 cut(s) 114, 867, 995
SatI GCNGC 6 cut(s) 288, 313, 592, 595, 837, 863
Sau3AI GATC 9 cut(s) 126, 130, 154, 321, 411, 627, 674, 922, 947
Sau96I GGNCC 4 cut(s) 872, 916, 972, 1064
SchI GAGTC 2 cut(s) 355, 423
ScrFI CCNGG 2 cut(s) 54, 1062
SduI GDGCHC 1 cut(s) 388
SfaNI GCATC 2 cut(s) 129, 506
Sfr274I CTCGAG 1 cut(s) 167
SinI GGWCC 2 cut(s) 872, 972
SlaI CTCGAG 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 2 cut(s) 42, 167
SmoI CTYRAG 2 cut(s) 42, 167
Sse9I AATT 3 cut(s) 345, 653, 888
SsiI CCGC 8 cut(s) 287, 313, 591, 594, 597, 836, 847, 975
SspMI CTAG 2 cut(s) 816, 828
SstI GAGCTC 1 cut(s) 388
StyD4I CCNGG 2 cut(s) 52, 1060
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 3 cut(s) 466, 566, 740
TaiI ACGT 7 cut(s) 153, 765, 798, 807, 915, 1043, 1080
TaqI TCGA 8 cut(s) 123, 129, 168, 432, 648, 726, 810, 1082
TaqII GACCGA 1 cut(s) 89
TasI AATT 3 cut(s) 345, 653, 888
TauI GCSGC 5 cut(s) 290, 315, 594, 597, 839
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 3 cut(s) 114, 867, 995
Tru9I TTAA 3 cut(s) 114, 867, 995
TscAI CASTG 2 cut(s) 33, 289
TseFI GTSAC 2 cut(s) 460, 1073
TseI GCWGC 1 cut(s) 862
Tsp45I GTSAC 2 cut(s) 460, 1073
TspDTI ATGAA 5 cut(s) 56, 435, 458, 697, 725
TspGWI ACGGA 4 cut(s) 48, 885, 931, 942
TspRI CASTG 2 cut(s) 33, 289
Tth111I GACNNNGTC 2 cut(s) 1039, 1042
VpaK11BI GGWCC 2 cut(s) 872, 972
XcmI CCANNNNNNNNNTGG 1 cut(s) 219
XhoI CTCGAG 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 810
XspI CTAG 2 cut(s) 816, 828
ZraI GACGTC 1 cut(s) 1041
Zsp2I ATGCAT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.