FvH4_7g17550
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
14880899 .. 14882247
1349 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17550.t1

Sequence Viewer

Length: 990 bp
ATGACTGAAAATATGAGCATATCTGTGAACGGCCAATCTCAAGTCCCTCCTGGTTTCAGATTTCATCCAACTGAAGAGGAGCTCTTGCAGTACTACTTGAGGAAGAAGGTCTCCGGTCAGAGGATTGATCTGGATGTCATCCGCGAGGTTGATCTCAATAAACTTGAACCATGGGACGTCCAAGAAAAGTGCAATATAGGAACCACACCACAAAATGATTGGTATTTCTTCAGCCACAAGGACAAGAAGTATCCAACCGGAACGCGCACGAATCGTGCAACAGCTGCCGGGTTCTGGAAGGCCACCGGCCGTGATAAGGTGATACGCAGCAACTGCTTGCGGATTGGCATGAGAAAAACTCTTGTGTTCTACAAAGGCAGAGCTCCCCGCGGCCAAAAATCCGATTGGATCATGCACGAGTATAGACTCGATGACAACACTAGCAGAATCACTAATGTCTCCGTTGTCGTTGGGGAGGCAGATCAGGAGGGGGGATGGGTGGTTTGCAGAATCTTCAAGAAGAAAAATCTCCACAGACCAATGCTGAGTGCTACTACTTCATCCATCACAACAGATACTACAAGAAGTACCCACCAACTCTTATATAATTCTTGTGATGCTGACGAGGGAGCTTTGGAGCATGAACTTAAGGTCATGGAATCAAGGACCTGTAACGGCTGCAAGGAAGAGACTAATGAAGCAAACAACTCGTTGTTCATGAACCACATTCATGGGTTTCATGACGATGTTGATAGATTCTTTAATCTTCCTAGCCTACAGAGCCCAGACTCATCTGCAGAGAATGATGACCAGGTGAGTCATCAACGAGTGGACTGGGTTGGCCTCACCAACTGGGCAGCGCTTGATCGTTTCGTGGCTTCAGAACTCGATGGCCGTGAAATGATGACGTACCCGGAATCAGGGAACTACTTCATTACTGATCATCATGATTTTCATGATCATGAGCTCCAATTACCAACTACTCTGTGA

Protein Analysis

330

Amino Acids

37.9

Weight (kDa)

5.87

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 143 3.1e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
AccII CGCG 3 cut(s) 144, 265, 390
AciI CCGC 4 cut(s) 142, 340, 388, 390
AclWI GGATC 1 cut(s) 416
AcoI YGGCCR 4 cut(s) 31, 307, 391, 892
AcuI CTGAAG 3 cut(s) 93, 214, 864
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 3 cut(s) 92, 589, 911
AfeI AGCGCT 1 cut(s) 861
AfiI CCNNNNNNNGG 4 cut(s) 120, 294, 316, 920
AflII CTTAAG 1 cut(s) 647
AgsI TTSAA 2 cut(s) 167, 517
AjnI CCWGG 2 cut(s) 49, 810
AluBI AGCT 5 cut(s) 82, 284, 383, 632, 967
AluI AGCT 5 cut(s) 82, 284, 383, 632, 967
Alw21I GWGCWC 3 cut(s) 84, 385, 969
Alw26I GTCTC 3 cut(s) 115, 463, 683
AlwI GGATC 1 cut(s) 416
AlwNI CAGNNNCTG 1 cut(s) 333
Aor51HI AGCGCT 1 cut(s) 861
AoxI GGCC 6 cut(s) 31, 300, 307, 391, 841, 892
ApeKI GCWGC 4 cut(s) 284, 327, 678, 857
Asp700I GAANNNNTTC 1 cut(s) 929
AspLEI GCGC 2 cut(s) 267, 862
AspS9I GGNCC 1 cut(s) 666
AsuC2I CCSGG 2 cut(s) 289, 914
AsuHPI GGTGA 3 cut(s) 331, 826, 838
AvaII GGWCC 1 cut(s) 666
BanII GRGCYC 4 cut(s) 84, 385, 785, 969
BauI CACGAG 1 cut(s) 416
Bbv12I GWGCWC 3 cut(s) 84, 385, 969
BbvI GCAGC 4 cut(s) 271, 339, 665, 869
BccI CCATC 3 cut(s) 489, 572, 884
BceAI ACGGC 4 cut(s) 46, 294, 691, 879
BcgI CGANNNNNNTGC 2 cut(s) 690, 724
BciT130I CCWGG 2 cut(s) 51, 812
BciVI GTATCC 1 cut(s) 261
BclI TGATCA 2 cut(s) 940, 958
BcnI CCSGG 2 cut(s) 289, 914
BcoDI GTCTC 3 cut(s) 115, 463, 683
BfaI CTAG 2 cut(s) 441, 771
BfmI CTRYAG 2 cut(s) 776, 795
BfoI RGCGCY 1 cut(s) 863
BfrI CTTAAG 1 cut(s) 647
BfuI GTATCC 1 cut(s) 261
BisI GCNGC 5 cut(s) 285, 328, 391, 679, 858
BlsI GCNGC 5 cut(s) 286, 329, 392, 680, 859
BmcAI AGTACT 1 cut(s) 92
Bme1390I CCNGG 4 cut(s) 51, 289, 812, 914
Bme18I GGWCC 1 cut(s) 666
BmgT120I GGNCC 1 cut(s) 666
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 4 cut(s) 51, 289, 812, 914
BmrI ACTGGG 2 cut(s) 844, 862
BmsI GCATC 1 cut(s) 607
BmuI ACTGGG 2 cut(s) 844, 862
BplI GAGNNNNNCTC 2 cut(s) 343, 375
BpuEI CTTGAG 2 cut(s) 24, 118
BpuMI CCSGG 2 cut(s) 289, 914
BsaHI GRCGYC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 170, 388
BsaWI WCCGGW 2 cut(s) 113, 257
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 294, 316, 920
Bse118I RCCGGY 1 cut(s) 305
Bse1I ACTGG 2 cut(s) 839, 857
BseBI CCWGG 2 cut(s) 51, 812
BseDI CCNNGG 2 cut(s) 170, 388
BseGI GGATG 5 cut(s) 64, 138, 139, 500, 560
BseLI CCNNNNNNNGG 4 cut(s) 120, 294, 316, 920
BseMII CTCAG 1 cut(s) 536
BseNI ACTGG 2 cut(s) 839, 857
BseRI GAGGAG 1 cut(s) 92
BseX3I CGGCCG 1 cut(s) 307
BseXI GCAGC 4 cut(s) 271, 339, 665, 869
Bsh1236I CGCG 3 cut(s) 144, 265, 390
Bsh1285I CGRYCG 1 cut(s) 310
BshFI GGCC 6 cut(s) 33, 302, 309, 393, 843, 894
BsiEI CGRYCG 1 cut(s) 310
BsiHKAI GWGCWC 3 cut(s) 84, 385, 969
BsiSI CCGG 5 cut(s) 114, 258, 288, 306, 914
BslFI GGGAC 2 cut(s) 29, 188
BslI CCNNNNNNNGG 4 cut(s) 120, 294, 316, 920
BsmAI GTCTC 3 cut(s) 115, 463, 683
BsmFI GGGAC 2 cut(s) 29, 188
BsnI GGCC 6 cut(s) 33, 302, 309, 393, 843, 894
Bso31I GGTCTC 1 cut(s) 115
Bsp1286I GDGCHC 4 cut(s) 84, 385, 785, 969
Bsp143I GATC 7 cut(s) 127, 151, 408, 481, 865, 940, 958
Bsp19I CCATGG 1 cut(s) 170
BspACI CCGC 4 cut(s) 142, 340, 388, 390
BspANI GGCC 6 cut(s) 33, 302, 309, 393, 843, 894
BspCNI CTCAG 1 cut(s) 537
BspFNI CGCG 3 cut(s) 144, 265, 390
BspHI TCATGA 5 cut(s) 717, 739, 946, 955, 961
BspLI GGNNCC 1 cut(s) 202
BspMAI CTGCAG 1 cut(s) 799
BspPI GGATC 1 cut(s) 416
BspTI CTTAAG 1 cut(s) 647
BspTNI GGTCTC 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 305
BsrI ACTGG 2 cut(s) 839, 857
BssAI RCCGGY 1 cut(s) 305
BssECI CCNNGG 2 cut(s) 170, 388
BssMI GATC 7 cut(s) 127, 151, 408, 481, 865, 940, 958
BssNI GRCGYC 1 cut(s) 177
BssSI CACGAG 1 cut(s) 416
BssT1I CCWWGG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 416
Bst2UI CCWGG 2 cut(s) 51, 812
Bst6I CTCTTC 2 cut(s) 69, 681
BstACI GRCGYC 1 cut(s) 177
BstAFI CTTAAG 1 cut(s) 647
BstAPI GCANNNNNTGC 2 cut(s) 284, 333
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 1 cut(s) 545
BstDSI CCRYGG 2 cut(s) 170, 388
BstF5I GGATG 5 cut(s) 64, 138, 139, 500, 560
BstFNI CGCG 3 cut(s) 144, 265, 390
BstH2I RGCGCY 1 cut(s) 863
BstHHI GCGC 2 cut(s) 267, 862
BstKTI GATC 7 cut(s) 130, 154, 411, 484, 868, 943, 961
BstMAI GTCTC 3 cut(s) 115, 463, 683
BstMBI GATC 7 cut(s) 127, 151, 408, 481, 865, 940, 958
BstMCI CGRYCG 1 cut(s) 310
BstMWI GCNNNNNNNGC 3 cut(s) 284, 333, 780
BstNI CCWGG 2 cut(s) 51, 812
BstSCI CCNGG 4 cut(s) 49, 287, 810, 912
BstSFI CTRYAG 2 cut(s) 776, 795
BstUI CGCG 3 cut(s) 144, 265, 390
BstV1I GCAGC 4 cut(s) 271, 339, 665, 869
BstXI CCANNNNNNTGG 1 cut(s) 731
BstZI CGGCCG 1 cut(s) 307
BsuI GTATCC 1 cut(s) 261
BsuRI GGCC 6 cut(s) 33, 302, 309, 393, 843, 894
BtgI CCRYGG 2 cut(s) 170, 388
BtsCI GGATG 5 cut(s) 64, 138, 139, 500, 560
Cac8I GCNNGC 1 cut(s) 338
CaiI CAGNNNCTG 1 cut(s) 333
CciI TCATGA 5 cut(s) 717, 739, 946, 955, 961
CfoI GCGC 2 cut(s) 267, 862
Cfr10I RCCGGY 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 666
Cfr42I CCGCGG 1 cut(s) 391
CsiI ACCWGGT 1 cut(s) 810
Csp6I GTAC 3 cut(s) 91, 588, 910
CviQI GTAC 3 cut(s) 91, 588, 910
DdeI CTNAG 1 cut(s) 545
DpnI GATC 7 cut(s) 129, 153, 410, 483, 867, 942, 960
DpnII GATC 7 cut(s) 127, 151, 408, 481, 865, 940, 958
EaeI YGGCCR 4 cut(s) 31, 307, 391, 892
EagI CGGCCG 1 cut(s) 307
Eam1104I CTCTTC 2 cut(s) 69, 681
EarI CTCTTC 2 cut(s) 69, 681
Ecl136II GAGCTC 3 cut(s) 82, 383, 967
EclXI CGGCCG 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 170
Eco24I GRGCYC 4 cut(s) 84, 385, 785, 969
Eco31I GGTCTC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 666
Eco47III AGCGCT 1 cut(s) 861
Eco52I CGGCCG 1 cut(s) 307
Eco53kI GAGCTC 3 cut(s) 82, 383, 967
Eco57I CTGAAG 3 cut(s) 93, 214, 864
EcoICRI GAGCTC 3 cut(s) 82, 383, 967
EcoO109I RGGNCCY 1 cut(s) 666
EcoRII CCWGG 2 cut(s) 49, 810
EcoT14I CCWWGG 1 cut(s) 170
EcoT38I GRGCYC 4 cut(s) 84, 385, 785, 969
ErhI CCWWGG 1 cut(s) 170
FaqI GGGAC 2 cut(s) 29, 188
FauI CCCGC 1 cut(s) 395
FbaI TGATCA 2 cut(s) 940, 958
Fnu4HI GCNGC 5 cut(s) 285, 328, 391, 679, 858
FokI GGATG 5 cut(s) 51, 125, 146, 507, 547
FriOI GRGCYC 4 cut(s) 84, 385, 785, 969
Fsp4HI GCNGC 5 cut(s) 285, 328, 391, 679, 858
FspBI CTAG 2 cut(s) 441, 771
GlaI GCGC 2 cut(s) 266, 861
GluI GCNGC 5 cut(s) 285, 328, 391, 679, 858
HaeII RGCGCY 1 cut(s) 863
HaeIII GGCC 6 cut(s) 33, 302, 309, 393, 843, 894
HapII CCGG 5 cut(s) 114, 258, 288, 306, 914
HhaI GCGC 2 cut(s) 267, 862
Hin1I GRCGYC 1 cut(s) 177
Hin6I GCGC 2 cut(s) 265, 860
HinP1I GCGC 2 cut(s) 265, 860
HinfI GANTC 9 cut(s) 271, 426, 447, 510, 659, 756, 788, 817, 917
HpaII CCGG 5 cut(s) 114, 258, 288, 306, 914
HphI GGTGA 3 cut(s) 331, 826, 838
Hpy166II GTNNAC 2 cut(s) 28, 832
Hpy188I TCNGA 4 cut(s) 59, 120, 403, 883
Hpy188III TCNNGA 9 cut(s) 131, 295, 485, 517, 718, 740, 947, 956, 962
Hpy8I GTNNAC 2 cut(s) 28, 832
HpyAV CCTTC 2 cut(s) 100, 292
HpyCH4IV ACGT 2 cut(s) 177, 908
HpyCH4V TGCA 7 cut(s) 88, 192, 278, 415, 507, 681, 797
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 333, 780
HpyF3I CTNAG 1 cut(s) 545
HpySE526I ACGT 2 cut(s) 177, 908
Hsp92I GRCGYC 1 cut(s) 177
HspAI GCGC 2 cut(s) 265, 860
Ksp22I TGATCA 2 cut(s) 940, 958
KspI CCGCGG 1 cut(s) 391
Kzo9I GATC 7 cut(s) 127, 151, 408, 481, 865, 940, 958
LmnI GCTCC 5 cut(s) 79, 388, 629, 637, 972
Lsp1109I GCAGC 4 cut(s) 271, 339, 665, 869
LweI GCATC 1 cut(s) 607
MabI ACCWGGT 1 cut(s) 810
MaeI CTAG 2 cut(s) 441, 771
MaeII ACGT 2 cut(s) 177, 908
MaeIII GTNAC 1 cut(s) 671
MalI GATC 7 cut(s) 129, 153, 410, 483, 867, 942, 960
MboI GATC 7 cut(s) 127, 151, 408, 481, 865, 940, 958
MboII GAAGA 7 cut(s) 86, 115, 220, 505, 532, 698, 758
MhlI GDGCHC 4 cut(s) 84, 385, 785, 969
MluCI AATT 2 cut(s) 607, 971
MlyI GAGTC 3 cut(s) 420, 782, 826
MmeI TCCRAC 2 cut(s) 92, 278
MnlI CCTC 9 cut(s) 57, 70, 93, 114, 139, 469, 481, 619, 854
MroXI GAANNNNTTC 1 cut(s) 929
MseI TTAA 2 cut(s) 648, 762
MslI CAYNNNNRTG 4 cut(s) 23, 729, 744, 960
MspA1I CMGCKG 2 cut(s) 284, 390
MspCI CTTAAG 1 cut(s) 647
MspI CCGG 5 cut(s) 114, 258, 288, 306, 914
MspR9I CCNGG 4 cut(s) 51, 289, 812, 914
MvaI CCWGG 2 cut(s) 51, 812
MvnI CGCG 3 cut(s) 144, 265, 390
MwoI GCNNNNNNNGC 3 cut(s) 284, 333, 780
NciI CCSGG 2 cut(s) 289, 914
NcoI CCATGG 1 cut(s) 170
NdeII GATC 7 cut(s) 127, 151, 408, 481, 865, 940, 958
NlaIV GGNNCC 1 cut(s) 202
PagI TCATGA 5 cut(s) 717, 739, 946, 955, 961
PdmI GAANNNNTTC 1 cut(s) 929
PfeI GAWTC 6 cut(s) 271, 447, 510, 659, 756, 917
PkrI GCNGC 5 cut(s) 286, 329, 392, 680, 859
PleI GAGTC 3 cut(s) 420, 782, 825
PpsI GAGTC 3 cut(s) 420, 782, 825
PpuMI RGGWCCY 1 cut(s) 666
Psp124BI GAGCTC 3 cut(s) 84, 385, 969
Psp5II RGGWCCY 1 cut(s) 666
Psp6I CCWGG 2 cut(s) 49, 810
PspGI CCWGG 2 cut(s) 49, 810
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 1 cut(s) 666
PspPPI RGGWCCY 1 cut(s) 666
PstI CTGCAG 1 cut(s) 799
PstNI CAGNNNCTG 1 cut(s) 333
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 3 cut(s) 92, 589, 911
RsaNI GTAC 3 cut(s) 91, 588, 910
RseI CAYNNNNRTG 4 cut(s) 23, 729, 744, 960
SacI GAGCTC 3 cut(s) 84, 385, 969
SacII CCGCGG 1 cut(s) 391
SaqAI TTAA 2 cut(s) 648, 762
SatI GCNGC 5 cut(s) 285, 328, 391, 679, 858
Sau3AI GATC 7 cut(s) 127, 151, 408, 481, 865, 940, 958
Sau96I GGNCC 1 cut(s) 666
ScaI AGTACT 1 cut(s) 92
SchI GAGTC 3 cut(s) 420, 782, 826
ScrFI CCNGG 4 cut(s) 51, 289, 812, 914
SduI GDGCHC 4 cut(s) 84, 385, 785, 969
SexAI ACCWGGT 1 cut(s) 810
SfaNI GCATC 1 cut(s) 607
SfcI CTRYAG 2 cut(s) 776, 795
Sfr303I CCGCGG 1 cut(s) 391
SgrBI CCGCGG 1 cut(s) 391
SinI GGWCC 1 cut(s) 666
SmiMI CAYNNNNRTG 4 cut(s) 23, 729, 744, 960
SmlI CTYRAG 3 cut(s) 39, 97, 647
SmoI CTYRAG 3 cut(s) 39, 97, 647
Sse9I AATT 2 cut(s) 607, 971
SsiI CCGC 4 cut(s) 142, 340, 388, 390
SspMI CTAG 2 cut(s) 441, 771
SstI GAGCTC 3 cut(s) 84, 385, 969
StyD4I CCNGG 4 cut(s) 49, 287, 810, 912
StyI CCWWGG 1 cut(s) 170
TaiI ACGT 2 cut(s) 180, 911
TaqI TCGA 2 cut(s) 429, 888
TasI AATT 2 cut(s) 607, 971
TatI WGTACW 1 cut(s) 90
TauI GCSGC 1 cut(s) 393
TfiI GAWTC 6 cut(s) 271, 447, 510, 659, 756, 917
Tru1I TTAA 2 cut(s) 648, 762
Tru9I TTAA 2 cut(s) 648, 762
TseI GCWGC 4 cut(s) 284, 327, 678, 857
TspGWI ACGGA 1 cut(s) 451
Vha464I CTTAAG 1 cut(s) 647
VpaK11BI GGWCC 1 cut(s) 666
XcmI CCANNNNNNNNNTGG 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 929
XspI CTAG 2 cut(s) 441, 771
ZraI GACGTC 1 cut(s) 178
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.