Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005503

Physical Location & Seq

Genomic Coordinates Reverse (-)

51396592 .. 51397713

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG290400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCATCCGCGAGGTCGATCTCAATAAACTTGAACCATGGGACGTCCAAGGTCTCCGTTGTCGTTGGGGAGGCATCTCAAGAGGAGGGATGGGTGGTTTGCAGAATCTTCAAGAAGAAAAATCTTCACAAAACAATAGACAGCCCAATTTTGATTGCACCAACTTCATCTATCACAACAGATAATATTACAAGTATCTTTGTTAGTTCATGTGATTATAATGATGAGGAAACTTTGAAGCATATACTTGACTGCATGGGATCAAGGACCTGCAAGGAAGAAACTAATGAAGCAAACAACTCATTAATCATGAACCACATTCATGGGTTTCATGACGATGATGATAGGTTCTTGAATCTTCCTAGCCTAGAGAGCCCAAACTCGTCTGCAGAGAATGATGACCCGGTGGGTCATCAAAGCGTGGACTCGGTTGGCCTCACCAACTGGGCAGCGCTTGATCGTTTCGTGGCTGCACAACTCGATGGCAGTGAAACGATGACCTACCCGGAATCAGGGAACTGCTTCAGTACTGATCACCATGATTATCATGATCATGAGCTCCAATTACCAACTACTCTGAGATCATCGAATTCATGCAGCAACGAGATCGAGCTGTGGCCTACTTTTGCTCCACATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009900 GO:0009987 GO:0010047 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032504 GO:0042546 GO:0044085 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

213

Amino Acids

23.58

Weight (kDa)

4.77

Isoelectric Point (pI)

59.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46770
fragaria_vesca	FvH4_7g17540 FvH4_7g17550
malus_domestica	MD01G1088100.v1.1 MD01G1088300.v1.1 MD07G1158300.v1.1 MD08G1232800.v1.1
prunus_persica	Prupe.2G196600_v2.0.a1
pyrus_communis	pycom01g11190 pycom07g15480
rosa_chinensis	RchiOBHm_Chr1g0360971 RchiOBHm_Chr1g0361001
rosa_laevigata	RLG00000027761 RLG00000027763
rosa_multiflora	Rmu_co8429119.1_g000001 Rmu_sc0000677.1_g000011 Rmu_sc0000677.1_g000019
rosa_roxburghii	Rroxscaffold_4G00295590 Rroxscaffold_4G00295630
rosa_rugosa	Rorug01G0284100
rosa_samantha	Rh1AG295300 Rh1BG260200 Rh1BG260400 Rh1CG277500 Rh1CG277600 Rh1DG290200 Rh1DG290400
rosa_wichuraiana	Rw1G026130 Rw1G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	219
AatII	GACGTC	1 cut(s)	47
Acc36I	ACCTGC	1 cut(s)	278
AccII	CGCG	1 cut(s)	11
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	268
AcsI	RAATTY	1 cut(s)	589
AcuI	CTGAAG	1 cut(s)	508
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	1 cut(s)	529
AfeI	AGCGCT	1 cut(s)	453
AfiI	CCNNNNNNNGG	1 cut(s)	512
AgsI	TTSAA	4 cut(s)	34, 112, 238, 355
AluBI	AGCT	2 cut(s)	559, 613
AluI	AGCT	2 cut(s)	559, 613
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	268
Aor51HI	AGCGCT	1 cut(s)	453
AoxI	GGCC	2 cut(s)	433, 617
ApeKI	GCWGC	3 cut(s)	449, 470, 597
ApoI	RAATTY	1 cut(s)	589
AseI	ATTAAT	1 cut(s)	305
Asp700I	GAANNNNTTC	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	1 cut(s)	267
AsuC2I	CCSGG	2 cut(s)	404, 506
AsuHPI	GGTGA	2 cut(s)	430, 527
AvaII	GGWCC	1 cut(s)	267
BanII	GRGCYC	2 cut(s)	377, 561
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	3 cut(s)	457, 461, 609
BccI	CCATC	2 cut(s)	84, 476
BcgI	CGANNNNNNTGC	2 cut(s)	589, 623
BclI	TGATCA	2 cut(s)	532, 550
BcnI	CCSGG	2 cut(s)	404, 506
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	2 cut(s)	363, 368
BfmI	CTRYAG	1 cut(s)	387
BfoI	RGCGCY	1 cut(s)	455
BfuAI	ACCTGC	1 cut(s)	278
BisI	GCNGC	3 cut(s)	450, 471, 598
BlsI	GCNGC	3 cut(s)	451, 472, 599
BmcAI	AGTACT	1 cut(s)	529
Bme1390I	CCNGG	2 cut(s)	404, 506
Bme18I	GGWCC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	267
BmrFI	CCNGG	2 cut(s)	404, 506
BmrI	ACTGGG	1 cut(s)	454
BmsI	GCATC	1 cut(s)	83
BmuI	ACTGGG	1 cut(s)	454
BpuEI	CTTGAG	1 cut(s)	63
BpuMI	CCSGG	2 cut(s)	404, 506
BsaHI	GRCGYC	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	37, 48
BsaXI	ACNNNNNCTCC	1 cut(s)	613
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
Bse1I	ACTGG	1 cut(s)	449
BseDI	CCNNGG	2 cut(s)	37, 48
BseGI	GGATG	2 cut(s)	5, 95
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseMII	CTCAG	1 cut(s)	569
BseNI	ACTGG	1 cut(s)	449
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	3 cut(s)	457, 461, 609
BsgI	GTGCAG	1 cut(s)	456
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	435, 619
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	2 cut(s)	404, 506
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	2 cut(s)	435, 619
Bso31I	GGTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	377, 561
Bsp143I	GATC	7 cut(s)	18, 260, 457, 532, 550, 581, 606
Bsp19I	CCATGG	1 cut(s)	37
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	2 cut(s)	435, 619
BspCNI	CTCAG	1 cut(s)	570
BspFNI	CGCG	1 cut(s)	11
BspHI	TCATGA	4 cut(s)	309, 331, 547, 553
BspMAI	CTGCAG	1 cut(s)	391
BspMI	ACCTGC	1 cut(s)	278
BspPI	GGATC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	2 cut(s)	37, 48
BssMI	GATC	7 cut(s)	18, 260, 457, 532, 550, 581, 606
BssNI	GRCGYC	1 cut(s)	44
BssT1I	CCWWGG	2 cut(s)	37, 48
BstACI	GRCGYC	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	578
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	5, 95
BstFNI	CGCG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	7 cut(s)	21, 263, 460, 535, 553, 584, 609
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	7 cut(s)	18, 260, 457, 532, 550, 581, 606
BstMWI	GCNNNNNNNGC	1 cut(s)	372
BstSCI	CCNGG	2 cut(s)	402, 504
BstSFI	CTRYAG	1 cut(s)	387
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	3 cut(s)	457, 461, 609
BstXI	CCANNNNNNTGG	1 cut(s)	323
BsuRI	GGCC	2 cut(s)	435, 619
BtgI	CCRYGG	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	5, 95
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	1 cut(s)	493
BveI	ACCTGC	1 cut(s)	278
CciI	TCATGA	4 cut(s)	309, 331, 547, 553
CfoI	GCGC	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	528
CviJI	RGCY	8 cut(s)	144, 366, 375, 435, 470, 559, 613, 619
CviKI_1	RGCY	8 cut(s)	144, 366, 375, 435, 470, 559, 613, 619
CviQI	GTAC	1 cut(s)	528
DdeI	CTNAG	1 cut(s)	578
DpnI	GATC	7 cut(s)	20, 262, 459, 534, 552, 583, 608
DpnII	GATC	7 cut(s)	18, 260, 457, 532, 550, 581, 606
Ecl136II	GAGCTC	1 cut(s)	559
Eco130I	CCWWGG	2 cut(s)	37, 48
Eco24I	GRGCYC	2 cut(s)	377, 561
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	267
Eco47III	AGCGCT	1 cut(s)	453
Eco53kI	GAGCTC	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	508
EcoICRI	GAGCTC	1 cut(s)	559
EcoO109I	RGGNCCY	1 cut(s)	267
EcoRI	GAATTC	1 cut(s)	589
EcoT14I	CCWWGG	2 cut(s)	37, 48
EcoT38I	GRGCYC	2 cut(s)	377, 561
ErhI	CCWWGG	2 cut(s)	37, 48
FaqI	GGGAC	1 cut(s)	55
FbaI	TGATCA	2 cut(s)	532, 550
Fnu4HI	GCNGC	3 cut(s)	450, 471, 598
FokI	GGATG	1 cut(s)	102
FriOI	GRGCYC	2 cut(s)	377, 561
Fsp4HI	GCNGC	3 cut(s)	450, 471, 598
FspBI	CTAG	2 cut(s)	363, 368
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	3 cut(s)	450, 471, 598
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	2 cut(s)	435, 619
HapII	CCGG	2 cut(s)	404, 506
HhaI	GCGC	1 cut(s)	454
Hin1I	GRCGYC	1 cut(s)	44
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HinfI	GANTC	4 cut(s)	105, 355, 425, 509
HpaII	CCGG	2 cut(s)	404, 506
HphI	GGTGA	2 cut(s)	430, 527
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	1 cut(s)	579
Hpy188III	TCNNGA	7 cut(s)	80, 112, 310, 332, 352, 548, 554
Hpy8I	GTNNAC	1 cut(s)	424
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	7 cut(s)	102, 158, 255, 273, 389, 473, 597
HpyF10VI	GCNNNNNNNGC	1 cut(s)	372
HpyF3I	CTNAG	1 cut(s)	578
HpySE526I	ACGT	1 cut(s)	44
Hsp92I	GRCGYC	1 cut(s)	44
HspAI	GCGC	1 cut(s)	452
Ksp22I	TGATCA	2 cut(s)	532, 550
Kzo9I	GATC	7 cut(s)	18, 260, 457, 532, 550, 581, 606
LmnI	GCTCC	2 cut(s)	564, 634
LpnPI	CCDG	5 cut(s)	283, 417, 430, 498, 519
Lsp1109I	GCAGC	3 cut(s)	457, 461, 609
LweI	GCATC	1 cut(s)	83
MaeI	CTAG	2 cut(s)	363, 368
MaeII	ACGT	1 cut(s)	44
MalI	GATC	7 cut(s)	20, 262, 459, 534, 552, 583, 608
MboI	GATC	7 cut(s)	18, 260, 457, 532, 550, 581, 606
MboII	GAAGA	5 cut(s)	100, 116, 127, 290, 350
MhlI	GDGCHC	2 cut(s)	377, 561
MluCI	AATT	3 cut(s)	147, 563, 589
MlyI	GAGTC	1 cut(s)	419
MnlI	CCTC	6 cut(s)	6, 64, 76, 79, 220, 446
MroXI	GAANNNNTTC	1 cut(s)	521
MseI	TTAA	1 cut(s)	305
MslI	CAYNNNNRTG	4 cut(s)	321, 336, 552, 637
MspI	CCGG	2 cut(s)	404, 506
MspR9I	CCNGG	2 cut(s)	404, 506
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	372
NciI	CCSGG	2 cut(s)	404, 506
NcoI	CCATGG	1 cut(s)	37
NdeII	GATC	7 cut(s)	18, 260, 457, 532, 550, 581, 606
PagI	TCATGA	4 cut(s)	309, 331, 547, 553
PdmI	GAANNNNTTC	1 cut(s)	521
PfeI	GAWTC	3 cut(s)	105, 355, 509
PkrI	GCNGC	3 cut(s)	451, 472, 599
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PpuMI	RGGWCCY	1 cut(s)	267
PshBI	ATTAAT	1 cut(s)	305
PsiI	TTATAA	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	561
Psp5II	RGGWCCY	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	267
PspPPI	RGGWCCY	1 cut(s)	267
PstI	CTGCAG	1 cut(s)	391
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
RseI	CAYNNNNRTG	4 cut(s)	321, 336, 552, 637
SacI	GAGCTC	1 cut(s)	561
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	3 cut(s)	450, 471, 598
Sau3AI	GATC	7 cut(s)	18, 260, 457, 532, 550, 581, 606
Sau96I	GGNCC	1 cut(s)	267
ScaI	AGTACT	1 cut(s)	529
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	2 cut(s)	404, 506
SduI	GDGCHC	2 cut(s)	377, 561
SetI	ASST	8 cut(s)	17, 47, 54, 272, 350, 503, 561, 615
SfaNI	GCATC	1 cut(s)	83
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	267
SmiMI	CAYNNNNRTG	4 cut(s)	321, 336, 552, 637
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	3 cut(s)	147, 563, 589
SsiI	CCGC	1 cut(s)	9
SspI	AATATT	1 cut(s)	187
SspMI	CTAG	2 cut(s)	363, 368
SstI	GAGCTC	1 cut(s)	561
StyD4I	CCNGG	2 cut(s)	402, 504
StyI	CCWWGG	2 cut(s)	37, 48
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	4 cut(s)	17, 480, 587, 609
TasI	AATT	3 cut(s)	147, 563, 589
TatI	WGTACW	1 cut(s)	527
TfiI	GAWTC	3 cut(s)	105, 355, 509
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	1 cut(s)	493
TseI	GCWGC	3 cut(s)	449, 470, 597
TspDTI	ATGAA	7 cut(s)	156, 198, 303, 311, 320, 326, 582
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	1 cut(s)	493
VpaK11BI	GGWCC	1 cut(s)	267
VspI	ATTAAT	1 cut(s)	305
XapI	RAATTY	1 cut(s)	589
XmnI	GAANNNNTTC	1 cut(s)	521
XspI	CTAG	2 cut(s)	363, 368
ZraI	GACGTC	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.