Rroxscaffold_4G00295630
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0005503
Physical Location & Seq
Forward (+)
15670078 .. 15671914
1837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00295630.1

Sequence Viewer

Length: 1266 bp
ATGACTGAAAACGTGAGTATATCTGTGAATGGCCAATCTCAAGTCCCTCCTGGTTTCAGATTTCATCCAACTGAAGAGGAGCTCTTGCAGTACTACTTGAGGAAGAAGGTCTCCAATCAGACGATTGACCTCGATGTTATCCGCGATGTCGATCTCAATAAGCTTGAGCCGTGGGATATACAAGAGAAGTGTAAGATAGGAACGACACCGCAAAATGATTGGTATTTTTTCAGCCACAAGGACAAGAAATACCCTACTGGAACTCGCACAAACCGTGCAACGGCTGCCGGATTCTGGAAGGCCACCGGCCGTGATAAGGTGATAAGCAGCAACTGCAGGCGGATCGGTATGAGGAAGACTCTTGTGTTCTACAAAGGCCGAGCTCCCCACGGCCAAAAGTCCGATTGGATCATGCACGAGTATAGACTCGACGACAACACCAGCAGCATAACTAGTGTCTCGATCACTGTCGTGGGAGAGGCAGCAGAGGAGGGATGGGTGGTTTGCAGAATCTTCAAGAAGAAAAATCTCCACAAAAGCTTGAGTAGTCCAATTATGAGTACTACTATTTCTTCATCTATCACAGCAGAAATTACAAGAAGTTCAAGCCAAATGTTTGATGATGATGACGATCAGGAGGGAGCTTTTGAGGAAATGCTTCAGTACATAGGAACAAAGACCTGCAAGGAAGAGATTAATGATCATCATCTTCATCCCATTAACACAGGTATCAAAAATCACATTAATGGCTACCATGATCATGATGATAGGTTCCTGAAACTTCCAAGCCTCGAGAGCCCAAACTCCACCAGTAGCCAGAACTATTACCAGCCCATTATCAATCATGAGGACATGGTCATAGATCAGAATGAAGGTACAGTTATTAACCAGCATCTGAGTTATCAACACGTGGACGACTCAGCCAGCCTCACCAACTGGGCAGCGCTTGATCGTTTGGTGGCTTCACAACTCAATGGCGGCCACGAAACCGGGTCGTCTAGGCAATTTGCTTGTTTAATTGAACCCACCATTAATGCATTTTGCAGTAGTAACAGTACCACTGATAGTGAACTCCAATTACCAAGTACACTACGATCGTCAACTTCATCGAATTCATCCAGCAAATCATACCATGCCACCCATCAGGATTACAACACCAACGAAATTGACCTGTGGAGTACTTTTGCTGCTGCAAGCAGACTGCAATCATCATCACCTTTGCCATCCTCCGACGCCGTATGCCACGCGTCGAATGCTCCTATATAA

Protein Analysis

421

Amino Acids

47.28

Weight (kDa)

5.82

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 143 2.2e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 689
AccII CGCG 2 cut(s) 144, 1247
AciI CCGC 4 cut(s) 142, 209, 340, 978
AclWI GGATC 2 cut(s) 350, 416
AcoI YGGCCR 4 cut(s) 31, 307, 391, 979
AcsI RAATTY 1 cut(s) 1111
AcuI CTGAAG 2 cut(s) 93, 644
AcvI CACGTG 1 cut(s) 910
AcyI GRCGYC 1 cut(s) 1233
AfaI GTAC 7 cut(s) 92, 562, 665, 877, 1057, 1087, 1180
AfeI AGCGCT 1 cut(s) 945
AfiI CCNNNNNNNGG 3 cut(s) 280, 294, 316
AflIII ACRYGT 2 cut(s) 907, 1245
AgsI TTSAA 3 cut(s) 517, 606, 1022
AhlI ACTAGT 1 cut(s) 452
AjnI CCWGG 1 cut(s) 49
AleI CACNNNNGTG 1 cut(s) 470
AluBI AGCT 5 cut(s) 82, 163, 383, 540, 644
AluI AGCT 5 cut(s) 82, 163, 383, 540, 644
Alw21I GWGCWC 2 cut(s) 84, 385
Alw26I GTCTC 2 cut(s) 115, 463
AlwI GGATC 2 cut(s) 350, 416
AlwNI CAGNNNCTG 2 cut(s) 333, 895
Ama87I CYCGRG 1 cut(s) 791
Aor51HI AGCGCT 1 cut(s) 945
AoxI GGCC 6 cut(s) 31, 300, 307, 376, 391, 979
ApeKI GCWGC 7 cut(s) 284, 327, 444, 482, 941, 1187, 1190
ApoI RAATTY 1 cut(s) 1111
AseI ATTAAT 3 cut(s) 696, 744, 1032
Asp700I GAANNNNTTC 1 cut(s) 657
AspLEI GCGC 1 cut(s) 946
AsuC2I CCSGG 1 cut(s) 991
AsuHPI GGTGA 3 cut(s) 331, 922, 1206
AvaI CYCGRG 1 cut(s) 791
BaeI ACNNNNGTAYC 2 cut(s) 712, 745
BalI TGGCCA 1 cut(s) 33
BanII GRGCYC 3 cut(s) 84, 385, 800
BauI CACGAG 1 cut(s) 416
BbrPI CACGTG 1 cut(s) 910
BbsI GAAGAC 1 cut(s) 362
Bbv12I GWGCWC 2 cut(s) 84, 385
BbvI GCAGC 7 cut(s) 271, 339, 456, 494, 953, 1174, 1177
BccI CCATC 3 cut(s) 489, 1149, 1231
BceAI ACGGC 5 cut(s) 154, 294, 297, 406, 1220
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BciT130I CCWGG 1 cut(s) 51
BclI TGATCA 2 cut(s) 700, 757
BcnI CCSGG 1 cut(s) 991
BcoDI GTCTC 2 cut(s) 115, 463
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 2 cut(s) 453, 999
BfmI CTRYAG 1 cut(s) 334
BfoI RGCGCY 1 cut(s) 947
BfuAI ACCTGC 1 cut(s) 689
BisI GCNGC 8 cut(s) 285, 328, 445, 483, 942, 979, 1188, 1191
BlsI GCNGC 8 cut(s) 286, 329, 446, 484, 943, 980, 1189, 1192
BmcAI AGTACT 3 cut(s) 92, 562, 1180
Bme1390I CCNGG 2 cut(s) 51, 991
BmeT110I CYCGRG 1 cut(s) 791
BmiI GGNNCC 1 cut(s) 773
BmrFI CCNGG 2 cut(s) 51, 991
BmrI ACTGGG 1 cut(s) 946
BmsI GCATC 1 cut(s) 901
BmuI ACTGGG 1 cut(s) 946
BpiI GAAGAC 1 cut(s) 362
BplI GAGNNNNNCTC 2 cut(s) 343, 375
BpuEI CTTGAG 4 cut(s) 24, 118, 185, 562
BpuMI CCSGG 1 cut(s) 991
BsaAI YACGTR 1 cut(s) 910
BsaBI GATNNNNATC 3 cut(s) 150, 630, 705
BsaHI GRCGYC 1 cut(s) 1233
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 170, 388
Bsc4I CCNNNNNNNGG 3 cut(s) 280, 294, 316
Bse118I RCCGGY 1 cut(s) 305
Bse1I ACTGG 3 cut(s) 262, 810, 941
Bse8I GATNNNNATC 3 cut(s) 150, 630, 705
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 170, 388
BseGI GGATG 5 cut(s) 64, 500, 712, 1115, 1223
BseJI GATNNNNATC 3 cut(s) 150, 630, 705
BseLI CCNNNNNNNGG 3 cut(s) 280, 294, 316
BseMII CTCAG 2 cut(s) 887, 933
BseNI ACTGG 3 cut(s) 262, 810, 941
BseRI GAGGAG 2 cut(s) 92, 503
BseX3I CGGCCG 1 cut(s) 307
BseXI GCAGC 7 cut(s) 271, 339, 456, 494, 953, 1174, 1177
Bsh1236I CGCG 2 cut(s) 144, 1247
Bsh1285I CGRYCG 2 cut(s) 310, 1097
BshFI GGCC 6 cut(s) 33, 302, 309, 378, 393, 981
BsiEI CGRYCG 2 cut(s) 310, 1097
BsiHKAI GWGCWC 2 cut(s) 84, 385
BsiHKCI CYCGRG 1 cut(s) 791
BsiSI CCGG 3 cut(s) 288, 306, 990
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 3 cut(s) 280, 294, 316
BsmAI GTCTC 2 cut(s) 115, 463
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 1258
BsnI GGCC 6 cut(s) 33, 302, 309, 378, 393, 981
Bso31I GGTCTC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 791
Bsp1286I GDGCHC 3 cut(s) 84, 385, 800
BspACI CCGC 4 cut(s) 142, 209, 340, 978
BspANI GGCC 6 cut(s) 33, 302, 309, 378, 393, 981
BspCNI CTCAG 2 cut(s) 888, 932
BspFNI CGCG 2 cut(s) 144, 1247
BspHI TCATGA 2 cut(s) 760, 844
BspLI GGNNCC 1 cut(s) 773
BspMAI CTGCAG 1 cut(s) 338
BspMI ACCTGC 1 cut(s) 689
BspPI GGATC 2 cut(s) 350, 416
BspTNI GGTCTC 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 305
BsrI ACTGG 3 cut(s) 262, 810, 941
BssAI RCCGGY 1 cut(s) 305
BssECI CCNNGG 2 cut(s) 170, 388
BssNI GRCGYC 1 cut(s) 1233
BssSI CACGAG 1 cut(s) 416
Bst2BI CACGAG 1 cut(s) 416
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 4 cut(s) 275, 469, 880, 1055
Bst6I CTCTTC 2 cut(s) 69, 684
BstACI GRCGYC 1 cut(s) 1233
BstAPI GCANNNNNTGC 2 cut(s) 284, 333
BstBAI YACGTR 1 cut(s) 910
BstC8I GCNNGC 3 cut(s) 338, 925, 1195
BstDEI CTNAG 2 cut(s) 896, 919
BstDSI CCRYGG 2 cut(s) 170, 388
BstF5I GGATG 5 cut(s) 64, 500, 712, 1115, 1223
BstFNI CGCG 2 cut(s) 144, 1247
BstH2I RGCGCY 1 cut(s) 947
BstHHI GCGC 1 cut(s) 946
BstMAI GTCTC 2 cut(s) 115, 463
BstMCI CGRYCG 2 cut(s) 310, 1097
BstMWI GCNNNNNNNGC 4 cut(s) 284, 333, 795, 1253
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 49, 989
BstSFI CTRYAG 1 cut(s) 334
BstUI CGCG 2 cut(s) 144, 1247
BstV1I GCAGC 7 cut(s) 271, 339, 456, 494, 953, 1174, 1177
BstV2I GAAGAC 1 cut(s) 362
BstZI CGGCCG 1 cut(s) 307
BsuRI GGCC 6 cut(s) 33, 302, 309, 378, 393, 981
BtgI CCRYGG 2 cut(s) 170, 388
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 5 cut(s) 64, 500, 712, 1115, 1223
BtsIMutI CAGTG 2 cut(s) 465, 1059
BveI ACCTGC 1 cut(s) 689
Cac8I GCNNGC 3 cut(s) 338, 925, 1195
CaiI CAGNNNCTG 2 cut(s) 333, 895
CciI TCATGA 2 cut(s) 760, 844
CfoI GCGC 1 cut(s) 946
Cfr10I RCCGGY 1 cut(s) 305
CseI GACGC 2 cut(s) 1236, 1241
Csp6I GTAC 7 cut(s) 91, 561, 664, 876, 1056, 1086, 1179
CviAII CATG 6 cut(s) 412, 755, 761, 845, 853, 1133
CviQI GTAC 7 cut(s) 91, 561, 664, 876, 1056, 1086, 1179
DdeI CTNAG 2 cut(s) 896, 919
EaeI YGGCCR 4 cut(s) 31, 307, 391, 979
EagI CGGCCG 1 cut(s) 307
Eam1104I CTCTTC 2 cut(s) 69, 684
EarI CTCTTC 2 cut(s) 69, 684
EciI GGCGGA 1 cut(s) 355
Ecl136II GAGCTC 2 cut(s) 82, 383
EclXI CGGCCG 1 cut(s) 307
Eco24I GRGCYC 3 cut(s) 84, 385, 800
Eco31I GGTCTC 1 cut(s) 115
Eco47III AGCGCT 1 cut(s) 945
Eco52I CGGCCG 1 cut(s) 307
Eco53kI GAGCTC 2 cut(s) 82, 383
Eco57I CTGAAG 2 cut(s) 93, 644
Eco72I CACGTG 1 cut(s) 910
Eco88I CYCGRG 1 cut(s) 791
EcoICRI GAGCTC 2 cut(s) 82, 383
EcoRI GAATTC 1 cut(s) 1111
EcoRII CCWGG 1 cut(s) 49
EcoT22I ATGCAT 1 cut(s) 1039
EcoT38I GRGCYC 3 cut(s) 84, 385, 800
FaeI CATG 6 cut(s) 415, 758, 764, 848, 856, 1136
FaqI GGGAC 1 cut(s) 29
FatI CATG 6 cut(s) 411, 754, 760, 844, 852, 1132
FbaI TGATCA 2 cut(s) 700, 757
Fnu4HI GCNGC 8 cut(s) 285, 328, 445, 483, 942, 979, 1188, 1191
FokI GGATG 5 cut(s) 51, 507, 699, 1102, 1210
FriOI GRGCYC 3 cut(s) 84, 385, 800
Fsp4HI GCNGC 8 cut(s) 285, 328, 445, 483, 942, 979, 1188, 1191
FspBI CTAG 2 cut(s) 453, 999
GlaI GCGC 1 cut(s) 945
GluI GCNGC 8 cut(s) 285, 328, 445, 483, 942, 979, 1188, 1191
HaeII RGCGCY 1 cut(s) 947
HaeIII GGCC 6 cut(s) 33, 302, 309, 378, 393, 981
HapII CCGG 3 cut(s) 288, 306, 990
HgaI GACGC 2 cut(s) 1236, 1241
HhaI GCGC 1 cut(s) 946
Hin1I GRCGYC 1 cut(s) 1233
Hin1II CATG 6 cut(s) 415, 758, 764, 848, 856, 1136
Hin6I GCGC 1 cut(s) 944
HinP1I GCGC 1 cut(s) 944
HincII GTYRAC 1 cut(s) 1101
HindII GTYRAC 1 cut(s) 1101
HindIII AAGCTT 2 cut(s) 161, 538
HinfI GANTC 5 cut(s) 291, 358, 426, 510, 917
HpaII CCGG 3 cut(s) 288, 306, 990
HphI GGTGA 3 cut(s) 331, 922, 1206
Hpy166II GTNNAC 4 cut(s) 913, 1070, 1088, 1101
Hpy188I TCNGA 6 cut(s) 59, 120, 403, 867, 897, 1231
Hpy188III TCNNGA 9 cut(s) 295, 460, 517, 635, 761, 775, 793, 845, 1145
Hpy8I GTNNAC 4 cut(s) 913, 1070, 1088, 1101
Hpy99I CGWCG 3 cut(s) 434, 1235, 1252
HpyAV CCTTC 3 cut(s) 100, 292, 866
HpyCH4III ACNGT 4 cut(s) 275, 469, 880, 1055
HpyCH4IV ACGT 2 cut(s) 12, 909
HpyF10VI GCNNNNNNNGC 4 cut(s) 284, 333, 795, 1253
HpyF3I CTNAG 2 cut(s) 896, 919
HpySE526I ACGT 2 cut(s) 12, 909
Hsp92I GRCGYC 1 cut(s) 1233
Hsp92II CATG 6 cut(s) 415, 758, 764, 848, 856, 1136
HspAI GCGC 1 cut(s) 944
Ksp22I TGATCA 2 cut(s) 700, 757
LmnI GCTCC 4 cut(s) 79, 388, 641, 1261
Lsp1109I GCAGC 7 cut(s) 271, 339, 456, 494, 953, 1174, 1177
LweI GCATC 1 cut(s) 901
MaeI CTAG 2 cut(s) 453, 999
MaeII ACGT 2 cut(s) 12, 909
MaeIII GTNAC 1 cut(s) 1049
MboII GAAGA 8 cut(s) 86, 115, 367, 505, 532, 564, 701, 701
MhlI GDGCHC 3 cut(s) 84, 385, 800
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 7 cut(s) 552, 591, 1004, 1017, 1076, 1111, 1164
MluI ACGCGT 1 cut(s) 1245
MluNI TGGCCA 1 cut(s) 33
MlyI GAGTC 3 cut(s) 352, 420, 911
MmeI TCCRAC 2 cut(s) 92, 1254
Mox20I TGGCCA 1 cut(s) 33
Mph1103I ATGCAT 1 cut(s) 1039
MroXI GAANNNNTTC 1 cut(s) 657
MscI TGGCCA 1 cut(s) 33
MseI TTAA 6 cut(s) 696, 720, 744, 885, 1016, 1032
MslI CAYNNNNRTG 3 cut(s) 470, 744, 759
Msp20I TGGCCA 1 cut(s) 33
MspI CCGG 3 cut(s) 288, 306, 990
MspR9I CCNGG 2 cut(s) 51, 991
Mva1269I GAATGC 1 cut(s) 1258
MvaI CCWGG 1 cut(s) 51
MvnI CGCG 2 cut(s) 144, 1247
MwoI GCNNNNNNNGC 4 cut(s) 284, 333, 795, 1253
NciI CCSGG 1 cut(s) 991
NlaIII CATG 6 cut(s) 415, 758, 764, 848, 856, 1136
NlaIV GGNNCC 1 cut(s) 773
NmeAIII GCCGAG 1 cut(s) 404
NsiI ATGCAT 1 cut(s) 1039
OliI CACNNNNGTG 1 cut(s) 470
PaeR7I CTCGAG 1 cut(s) 791
PagI TCATGA 2 cut(s) 760, 844
PcsI WCGNNNNNNNCGW 1 cut(s) 271
PctI GAATGC 1 cut(s) 1258
PdmI GAANNNNTTC 1 cut(s) 657
PfeI GAWTC 2 cut(s) 291, 510
PflFI GACNNNGTC 1 cut(s) 854
PkrI GCNGC 8 cut(s) 286, 329, 446, 484, 943, 980, 1189, 1192
Ple19I CGATCG 1 cut(s) 1097
PleI GAGTC 3 cut(s) 352, 420, 911
PmaCI CACGTG 1 cut(s) 910
PmlI CACGTG 1 cut(s) 910
PpsI GAGTC 3 cut(s) 352, 420, 911
Ppu21I YACGTR 1 cut(s) 910
PshBI ATTAAT 3 cut(s) 696, 744, 1032
Psp124BI GAGCTC 2 cut(s) 84, 385
Psp6I CCWGG 1 cut(s) 49
PspCI CACGTG 1 cut(s) 910
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 773
PsrI GAACNNNNNNTAC 2 cut(s) 1062, 1094
PstI CTGCAG 1 cut(s) 338
PstNI CAGNNNCTG 2 cut(s) 333, 895
PsyI GACNNNGTC 1 cut(s) 854
PvuI CGATCG 1 cut(s) 1097
RsaI GTAC 7 cut(s) 92, 562, 665, 877, 1057, 1087, 1180
RsaNI GTAC 7 cut(s) 91, 561, 664, 876, 1056, 1086, 1179
RseI CAYNNNNRTG 3 cut(s) 470, 744, 759
SacI GAGCTC 2 cut(s) 84, 385
SaqAI TTAA 6 cut(s) 696, 720, 744, 885, 1016, 1032
SatI GCNGC 8 cut(s) 285, 328, 445, 483, 942, 979, 1188, 1191
ScaI AGTACT 3 cut(s) 92, 562, 1180
SchI GAGTC 3 cut(s) 352, 420, 911
ScrFI CCNGG 2 cut(s) 51, 991
SduI GDGCHC 3 cut(s) 84, 385, 800
SfaNI GCATC 1 cut(s) 901
SfcI CTRYAG 1 cut(s) 334
Sfr274I CTCGAG 1 cut(s) 791
SlaI CTCGAG 1 cut(s) 791
SmiMI CAYNNNNRTG 3 cut(s) 470, 744, 759
SmlI CTYRAG 5 cut(s) 39, 97, 164, 541, 791
SmoI CTYRAG 5 cut(s) 39, 97, 164, 541, 791
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 7 cut(s) 552, 591, 1004, 1017, 1076, 1111, 1164
SsiI CCGC 4 cut(s) 142, 209, 340, 978
SspMI CTAG 2 cut(s) 453, 999
SstI GAGCTC 2 cut(s) 84, 385
StyD4I CCNGG 2 cut(s) 49, 989
TaaI ACNGT 4 cut(s) 275, 469, 880, 1055
TaiI ACGT 2 cut(s) 15, 912
TaqI TCGA 7 cut(s) 132, 150, 429, 461, 792, 1109, 1250
TasI AATT 7 cut(s) 552, 591, 1004, 1017, 1076, 1111, 1164
TatI WGTACW 5 cut(s) 90, 560, 663, 1085, 1178
TauI GCSGC 1 cut(s) 981
TfiI GAWTC 2 cut(s) 291, 510
Tru1I TTAA 6 cut(s) 696, 720, 744, 885, 1016, 1032
Tru9I TTAA 6 cut(s) 696, 720, 744, 885, 1016, 1032
TscAI CASTG 2 cut(s) 472, 1066
TseI GCWGC 7 cut(s) 284, 327, 444, 482, 941, 1187, 1190
TspDTI ATGAA 6 cut(s) 53, 564, 701, 885, 1095, 1104
TspRI CASTG 2 cut(s) 472, 1066
Tth111I GACNNNGTC 1 cut(s) 854
VspI ATTAAT 3 cut(s) 696, 744, 1032
XapI RAATTY 1 cut(s) 1111
XhoI CTCGAG 1 cut(s) 791
XmnI GAANNNNTTC 1 cut(s) 657
XspI CTAG 2 cut(s) 453, 999
ZrmI AGTACT 3 cut(s) 92, 562, 1180
Zsp2I ATGCAT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.