Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005503

Physical Location & Seq

Genomic Coordinates Reverse (-)

54683187 .. 54685024

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG277500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGTTGGTTTTTGCAGAGAAGTGTAAGATAGGAACGACACCGCAAAATGATTGGTATTTTTTCAGCCACAAGGACAAGAAATACCCTACTGGAACTCGCACAAACCGTGCAACGGCTGCCGGATTCTGGAAGGCCACCGGCCGTGATAAGGTGATAAGCAGCAACTGCAGACGGATCGGTATGAGGAAGACTCTTGTGTTCTACAAAGGCCGAGCTCCCCACGGTCAAAAGTCCGATTGGATCATGCACGAGTATAGACTCGACGACAACACCAGCAGCATAACTAGTGTCTCGATCACTGTCGTGGGAGAGGCAGCCGAGGAGGGATGGGTGGTTTGCAGAATCTTCAAGAAGAAAAATCTCCACAAAAGCTTGAGTAGTCCAATTATGAGTACTACTATTTCTTCATCTATCACAGCAGAACTTACAAGAAGTTCAAGCCAAATGTTTGATGATGATGACGATCAGGAGGGAGCTTTTGAGGAAATGCTTCAGTACATAGGAACAAAGACCTGCAAGGAAGAGATTAATGATCATCATCTTCATCCCATTAACACAGGTATCAAAAATCACATCAATGGCTACCATGATCATGATGATAGGTTCCTGAAACTTCCAAGCCTCGAGAGCCCAAACTCCACCAGTAGCCAGAACTATTACCAGCCCATTATCAATCATGAGGACATGGTCATAGATCAGAATGAAGGTACAGTTATTAACCAGCATCTGAGTTATCAACACGTGGACGACTCGGCCAGCCTCACCAACTGGGCAGCGCTTGATCGTTTGGTGGCTTCACAACTCAATGGCGGCCACGAAACCGGTTCGTCTAGGCAATTTGCTTGTTTAATTGAACCCACCATTAATGCATTTTGCAGTAGTAACAGTACCACTGATCATGAACTCCAATTACCAAGTACACTACGATCGTCAACTTCATCGAATTCATCCAGCAAATCATACCATGCCACCCATCAGGATTACAACACCAACGAAATTGACCTGTGGAGTACTGTTGCTGCTGCAAGCAGACTGCAATCATCATTACCTTTGCCATCCTCCGACGCCGTATGCCACGCGTCGAATGCTCCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009900 GO:0009987 GO:0010047 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032504 GO:0042546 GO:0044085 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

365

Amino Acids

40.74

Weight (kDa)

6.12

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	14 - 87	2.1e-25	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46770
fragaria_vesca	FvH4_7g17540 FvH4_7g17550
malus_domestica	MD01G1088100.v1.1 MD01G1088300.v1.1 MD07G1158300.v1.1 MD08G1232800.v1.1
prunus_persica	Prupe.2G196600_v2.0.a1
pyrus_communis	pycom01g11190 pycom07g15480
rosa_chinensis	RchiOBHm_Chr1g0360971 RchiOBHm_Chr1g0361001
rosa_laevigata	RLG00000027761 RLG00000027763
rosa_multiflora	Rmu_co8429119.1_g000001 Rmu_sc0000677.1_g000011 Rmu_sc0000677.1_g000019
rosa_roxburghii	Rroxscaffold_4G00295590 Rroxscaffold_4G00295630
rosa_rugosa	Rorug01G0284100
rosa_samantha	Rh1AG295300 Rh1BG260200 Rh1BG260400 Rh1CG277500 Rh1CG277600 Rh1DG290200 Rh1DG290400
rosa_wichuraiana	Rw1G026130 Rw1G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	521
AccII	CGCG	1 cut(s)	1079
AciI	CCGC	2 cut(s)	41, 810
AclWI	GGATC	2 cut(s)	182, 248
AcoI	YGGCCR	3 cut(s)	139, 753, 811
AcsI	RAATTY	1 cut(s)	943
AcuI	CTGAAG	1 cut(s)	476
AcvI	CACGTG	1 cut(s)	742
AcyI	GRCGYC	1 cut(s)	1065
AfaI	GTAC	6 cut(s)	394, 497, 709, 889, 919, 1012
AfeI	AGCGCT	1 cut(s)	777
AfiI	CCNNNNNNNGG	3 cut(s)	112, 126, 148
AflIII	ACRYGT	2 cut(s)	739, 1077
AgeI	ACCGGT	1 cut(s)	821
AgsI	TTSAA	3 cut(s)	349, 438, 854
AhlI	ACTAGT	1 cut(s)	284
AleI	CACNNNNGTG	1 cut(s)	302
AluBI	AGCT	3 cut(s)	215, 372, 476
AluI	AGCT	3 cut(s)	215, 372, 476
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	2 cut(s)	182, 248
AlwNI	CAGNNNCTG	2 cut(s)	165, 727
Ama87I	CYCGRG	1 cut(s)	623
Aor51HI	AGCGCT	1 cut(s)	777
AoxI	GGCC	5 cut(s)	132, 139, 208, 753, 811
ApeKI	GCWGC	7 cut(s)	116, 159, 276, 314, 773, 1019, 1022
ApoI	RAATTY	1 cut(s)	943
AseI	ATTAAT	2 cut(s)	528, 864
AsiGI	ACCGGT	1 cut(s)	821
Asp700I	GAANNNNTTC	1 cut(s)	489
AspLEI	GCGC	1 cut(s)	778
AsuHPI	GGTGA	2 cut(s)	163, 754
AvaI	CYCGRG	1 cut(s)	623
BaeI	ACNNNNGTAYC	2 cut(s)	544, 577
BanII	GRGCYC	2 cut(s)	217, 632
BauI	CACGAG	1 cut(s)	248
BbrPI	CACGTG	1 cut(s)	742
BbsI	GAAGAC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	7 cut(s)	103, 171, 288, 326, 785, 1006, 1009
BccI	CCATC	3 cut(s)	321, 981, 1063
BceAI	ACGGC	3 cut(s)	126, 129, 1052
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BclI	TGATCA	3 cut(s)	532, 589, 895
BcoDI	GTCTC	1 cut(s)	295
BcuI	ACTAGT	1 cut(s)	284
BfaI	CTAG	2 cut(s)	285, 831
BfmI	CTRYAG	1 cut(s)	166
BfoI	RGCGCY	1 cut(s)	779
BfuAI	ACCTGC	1 cut(s)	521
BisI	GCNGC	8 cut(s)	117, 160, 277, 315, 774, 811, 1020, 1023
BlsI	GCNGC	8 cut(s)	118, 161, 278, 316, 775, 812, 1021, 1024
BmcAI	AGTACT	2 cut(s)	394, 1012
BmeT110I	CYCGRG	1 cut(s)	623
BmiI	GGNNCC	1 cut(s)	605
BmrI	ACTGGG	1 cut(s)	778
BmsI	GCATC	1 cut(s)	733
BmuI	ACTGGG	1 cut(s)	778
BpiI	GAAGAC	1 cut(s)	194
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BpuEI	CTTGAG	1 cut(s)	394
BsaAI	YACGTR	1 cut(s)	742
BsaBI	GATNNNNATC	2 cut(s)	462, 537
BsaHI	GRCGYC	1 cut(s)	1065
BsaJI	CCNNGG	2 cut(s)	220, 318
BsaWI	WCCGGW	1 cut(s)	821
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 126, 148
Bse118I	RCCGGY	2 cut(s)	137, 821
Bse1I	ACTGG	3 cut(s)	94, 642, 773
Bse8I	GATNNNNATC	2 cut(s)	462, 537
BseDI	CCNNGG	2 cut(s)	220, 318
BseGI	GGATG	4 cut(s)	332, 544, 947, 1055
BseJI	GATNNNNATC	2 cut(s)	462, 537
BseLI	CCNNNNNNNGG	3 cut(s)	112, 126, 148
BseMII	CTCAG	1 cut(s)	719
BseNI	ACTGG	3 cut(s)	94, 642, 773
BseRI	GAGGAG	1 cut(s)	335
BseX3I	CGGCCG	1 cut(s)	139
BseXI	GCAGC	7 cut(s)	103, 171, 288, 326, 785, 1006, 1009
Bsh1236I	CGCG	1 cut(s)	1079
Bsh1285I	CGRYCG	2 cut(s)	142, 929
BshFI	GGCC	5 cut(s)	134, 141, 210, 755, 813
BshTI	ACCGGT	1 cut(s)	821
BsiEI	CGRYCG	2 cut(s)	142, 929
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	623
BsiSI	CCGG	3 cut(s)	120, 138, 822
BslI	CCNNNNNNNGG	3 cut(s)	112, 126, 148
BsmAI	GTCTC	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	1090
BsnI	GGCC	5 cut(s)	134, 141, 210, 755, 813
BsoBI	CYCGRG	1 cut(s)	623
Bsp1286I	GDGCHC	2 cut(s)	217, 632
BspACI	CCGC	2 cut(s)	41, 810
BspANI	GGCC	5 cut(s)	134, 141, 210, 755, 813
BspCNI	CTCAG	1 cut(s)	720
BspFNI	CGCG	1 cut(s)	1079
BspHI	TCATGA	3 cut(s)	592, 676, 898
BspLI	GGNNCC	1 cut(s)	605
BspMAI	CTGCAG	1 cut(s)	170
BspMI	ACCTGC	1 cut(s)	521
BspPI	GGATC	2 cut(s)	182, 248
BsrFI	RCCGGY	2 cut(s)	137, 821
BsrI	ACTGG	3 cut(s)	94, 642, 773
BssAI	RCCGGY	2 cut(s)	137, 821
BssECI	CCNNGG	2 cut(s)	220, 318
BssNI	GRCGYC	1 cut(s)	1065
BssSI	CACGAG	1 cut(s)	248
Bst2BI	CACGAG	1 cut(s)	248
Bst4CI	ACNGT	6 cut(s)	107, 224, 301, 712, 887, 1015
Bst6I	CTCTTC	1 cut(s)	516
BstACI	GRCGYC	1 cut(s)	1065
BstAPI	GCANNNNNTGC	2 cut(s)	116, 165
BstBAI	YACGTR	1 cut(s)	742
BstC8I	GCNNGC	2 cut(s)	757, 1027
BstDEI	CTNAG	1 cut(s)	728
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	4 cut(s)	332, 544, 947, 1055
BstFNI	CGCG	1 cut(s)	1079
BstH2I	RGCGCY	1 cut(s)	779
BstHHI	GCGC	1 cut(s)	778
BstMAI	GTCTC	1 cut(s)	295
BstMCI	CGRYCG	2 cut(s)	142, 929
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 165, 627, 1085
BstSFI	CTRYAG	1 cut(s)	166
BstUI	CGCG	1 cut(s)	1079
BstV1I	GCAGC	7 cut(s)	103, 171, 288, 326, 785, 1006, 1009
BstV2I	GAAGAC	1 cut(s)	194
BstZI	CGGCCG	1 cut(s)	139
BsuRI	GGCC	5 cut(s)	134, 141, 210, 755, 813
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	4 cut(s)	332, 544, 947, 1055
BtsIMutI	CAGTG	2 cut(s)	297, 891
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	2 cut(s)	757, 1027
CaiI	CAGNNNCTG	2 cut(s)	165, 727
CciI	TCATGA	3 cut(s)	592, 676, 898
CfoI	GCGC	1 cut(s)	778
Cfr10I	RCCGGY	2 cut(s)	137, 821
CseI	GACGC	2 cut(s)	1068, 1073
Csp6I	GTAC	6 cut(s)	393, 496, 708, 888, 918, 1011
CspAI	ACCGGT	1 cut(s)	821
CviAII	CATG	7 cut(s)	244, 587, 593, 677, 685, 899, 965
CviQI	GTAC	6 cut(s)	393, 496, 708, 888, 918, 1011
DdeI	CTNAG	1 cut(s)	728
EaeI	YGGCCR	3 cut(s)	139, 753, 811
EagI	CGGCCG	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
Ecl136II	GAGCTC	1 cut(s)	215
EclXI	CGGCCG	1 cut(s)	139
Eco24I	GRGCYC	2 cut(s)	217, 632
Eco47III	AGCGCT	1 cut(s)	777
Eco52I	CGGCCG	1 cut(s)	139
Eco53kI	GAGCTC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	476
Eco72I	CACGTG	1 cut(s)	742
Eco88I	CYCGRG	1 cut(s)	623
EcoICRI	GAGCTC	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	943
EcoT22I	ATGCAT	1 cut(s)	871
EcoT38I	GRGCYC	2 cut(s)	217, 632
FaeI	CATG	7 cut(s)	247, 590, 596, 680, 688, 902, 968
FatI	CATG	7 cut(s)	243, 586, 592, 676, 684, 898, 964
FbaI	TGATCA	3 cut(s)	532, 589, 895
Fnu4HI	GCNGC	8 cut(s)	117, 160, 277, 315, 774, 811, 1020, 1023
FokI	GGATG	4 cut(s)	339, 531, 934, 1042
FriOI	GRGCYC	2 cut(s)	217, 632
Fsp4HI	GCNGC	8 cut(s)	117, 160, 277, 315, 774, 811, 1020, 1023
FspBI	CTAG	2 cut(s)	285, 831
GlaI	GCGC	1 cut(s)	777
GluI	GCNGC	8 cut(s)	117, 160, 277, 315, 774, 811, 1020, 1023
HaeII	RGCGCY	1 cut(s)	779
HaeIII	GGCC	5 cut(s)	134, 141, 210, 755, 813
HapII	CCGG	3 cut(s)	120, 138, 822
HgaI	GACGC	2 cut(s)	1068, 1073
HhaI	GCGC	1 cut(s)	778
Hin1I	GRCGYC	1 cut(s)	1065
Hin1II	CATG	7 cut(s)	247, 590, 596, 680, 688, 902, 968
Hin6I	GCGC	1 cut(s)	776
HinP1I	GCGC	1 cut(s)	776
HincII	GTYRAC	1 cut(s)	933
HindII	GTYRAC	1 cut(s)	933
HindIII	AAGCTT	1 cut(s)	370
HinfI	GANTC	5 cut(s)	123, 190, 258, 342, 749
HpaII	CCGG	3 cut(s)	120, 138, 822
HphI	GGTGA	2 cut(s)	163, 754
Hpy166II	GTNNAC	3 cut(s)	745, 920, 933
Hpy188I	TCNGA	4 cut(s)	235, 699, 729, 1063
Hpy8I	GTNNAC	3 cut(s)	745, 920, 933
Hpy99I	CGWCG	3 cut(s)	266, 1067, 1084
HpyAV	CCTTC	2 cut(s)	124, 698
HpyCH4III	ACNGT	6 cut(s)	107, 224, 301, 712, 887, 1015
HpyCH4IV	ACGT	1 cut(s)	741
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 165, 627, 1085
HpyF3I	CTNAG	1 cut(s)	728
HpySE526I	ACGT	1 cut(s)	741
Hsp92I	GRCGYC	1 cut(s)	1065
Hsp92II	CATG	7 cut(s)	247, 590, 596, 680, 688, 902, 968
HspAI	GCGC	1 cut(s)	776
Ksp22I	TGATCA	3 cut(s)	532, 589, 895
LmnI	GCTCC	3 cut(s)	220, 473, 1093
Lsp1109I	GCAGC	7 cut(s)	103, 171, 288, 326, 785, 1006, 1009
LweI	GCATC	1 cut(s)	733
MaeI	CTAG	2 cut(s)	285, 831
MaeII	ACGT	1 cut(s)	741
MaeIII	GTNAC	1 cut(s)	881
MboII	GAAGA	6 cut(s)	199, 337, 364, 396, 533, 533
MhlI	GDGCHC	2 cut(s)	217, 632
MluCI	AATT	6 cut(s)	384, 836, 849, 908, 943, 996
MluI	ACGCGT	1 cut(s)	1077
MlyI	GAGTC	3 cut(s)	184, 252, 743
MmeI	TCCRAC	1 cut(s)	1086
Mph1103I	ATGCAT	1 cut(s)	871
MroXI	GAANNNNTTC	1 cut(s)	489
MseI	TTAA	5 cut(s)	528, 552, 717, 848, 864
MslI	CAYNNNNRTG	3 cut(s)	302, 576, 591
MspI	CCGG	3 cut(s)	120, 138, 822
Mva1269I	GAATGC	1 cut(s)	1090
MvnI	CGCG	1 cut(s)	1079
MwoI	GCNNNNNNNGC	4 cut(s)	116, 165, 627, 1085
NlaIII	CATG	7 cut(s)	247, 590, 596, 680, 688, 902, 968
NlaIV	GGNNCC	1 cut(s)	605
NmeAIII	GCCGAG	3 cut(s)	236, 343, 731
NsiI	ATGCAT	1 cut(s)	871
OliI	CACNNNNGTG	1 cut(s)	302
PaeR7I	CTCGAG	1 cut(s)	623
PagI	TCATGA	3 cut(s)	592, 676, 898
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PctI	GAATGC	1 cut(s)	1090
PdmI	GAANNNNTTC	1 cut(s)	489
PfeI	GAWTC	2 cut(s)	123, 342
PflFI	GACNNNGTC	1 cut(s)	686
PinAI	ACCGGT	1 cut(s)	821
PkrI	GCNGC	8 cut(s)	118, 161, 278, 316, 775, 812, 1021, 1024
Ple19I	CGATCG	1 cut(s)	929
PleI	GAGTC	3 cut(s)	184, 252, 743
PmaCI	CACGTG	1 cut(s)	742
PmlI	CACGTG	1 cut(s)	742
PpsI	GAGTC	3 cut(s)	184, 252, 743
Ppu21I	YACGTR	1 cut(s)	742
PshBI	ATTAAT	2 cut(s)	528, 864
Psp124BI	GAGCTC	1 cut(s)	217
PspCI	CACGTG	1 cut(s)	742
PspN4I	GGNNCC	1 cut(s)	605
PsrI	GAACNNNNNNTAC	2 cut(s)	894, 926
PstI	CTGCAG	1 cut(s)	170
PstNI	CAGNNNCTG	2 cut(s)	165, 727
PsyI	GACNNNGTC	1 cut(s)	686
PvuI	CGATCG	1 cut(s)	929
RsaI	GTAC	6 cut(s)	394, 497, 709, 889, 919, 1012
RsaNI	GTAC	6 cut(s)	393, 496, 708, 888, 918, 1011
RseI	CAYNNNNRTG	3 cut(s)	302, 576, 591
SacI	GAGCTC	1 cut(s)	217
SaqAI	TTAA	5 cut(s)	528, 552, 717, 848, 864
SatI	GCNGC	8 cut(s)	117, 160, 277, 315, 774, 811, 1020, 1023
ScaI	AGTACT	2 cut(s)	394, 1012
SchI	GAGTC	3 cut(s)	184, 252, 743
SduI	GDGCHC	2 cut(s)	217, 632
SfaNI	GCATC	1 cut(s)	733
SfcI	CTRYAG	1 cut(s)	166
Sfr274I	CTCGAG	1 cut(s)	623
SlaI	CTCGAG	1 cut(s)	623
SmiMI	CAYNNNNRTG	3 cut(s)	302, 576, 591
SmlI	CTYRAG	2 cut(s)	373, 623
SmoI	CTYRAG	2 cut(s)	373, 623
SpeI	ACTAGT	1 cut(s)	284
Sse9I	AATT	6 cut(s)	384, 836, 849, 908, 943, 996
SsiI	CCGC	2 cut(s)	41, 810
SspMI	CTAG	2 cut(s)	285, 831
SstI	GAGCTC	1 cut(s)	217
TaaI	ACNGT	6 cut(s)	107, 224, 301, 712, 887, 1015
TaiI	ACGT	1 cut(s)	744
TaqI	TCGA	5 cut(s)	261, 293, 624, 941, 1082
TasI	AATT	6 cut(s)	384, 836, 849, 908, 943, 996
TatI	WGTACW	4 cut(s)	392, 495, 917, 1010
TauI	GCSGC	1 cut(s)	813
TfiI	GAWTC	2 cut(s)	123, 342
Tru1I	TTAA	5 cut(s)	528, 552, 717, 848, 864
Tru9I	TTAA	5 cut(s)	528, 552, 717, 848, 864
TscAI	CASTG	2 cut(s)	304, 898
TseI	GCWGC	7 cut(s)	116, 159, 276, 314, 773, 1019, 1022
TspDTI	ATGAA	6 cut(s)	396, 533, 717, 915, 927, 936
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	2 cut(s)	304, 898
Tth111I	GACNNNGTC	1 cut(s)	686
VspI	ATTAAT	2 cut(s)	528, 864
XapI	RAATTY	1 cut(s)	943
XhoI	CTCGAG	1 cut(s)	623
XmnI	GAANNNNTTC	1 cut(s)	489
XspI	CTAG	2 cut(s)	285, 831
ZrmI	AGTACT	2 cut(s)	394, 1012
Zsp2I	ATGCAT	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.