FvH4_7g17540
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
14862443 .. 14864472
2030 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17540.t1

Sequence Viewer

Length: 1260 bp
ATGACTGAAAACGTGAGCATTTCTGTGAATGGACAATCTCAAGTCCCTCCTGGTTTCAGATTTCATCCAACTGAAGAGGAGCTGTTGCAGTACTACTTAAGGAAGAAGGTCTCCAATCAAAGGATTGATCTGGATGTCATCCGCGATGTCGATCTCAATAAGCTTGAGCCGTGGGATATACAAGAGAAGTGTAAGATAGGAACGACACCGCAAAATGATTGGTATTTCTTCAGCCACAAGGACAAGAAATACCCTACTGGAACTCGCACAAACCGTGCAACGGCTGCCGGATTCTGGAAGGCCACTGGCCGTGACAAGGTCATAAGCAGCAACTGCAGGCGGATCGGTATGAGGAAGACTCTTGTTTTCTACAAAGGCCGAGCTCCCCATGGCCAGAAGTCTGATTGGATCATGCACGAGTATAGACTCGACGACAACAACAGCTGCATAACTAGTGTCTCGATCACGGTCGTGGGAGAGGCAGCAGAGGAGGGATGGGTGGTTTGCAGAATCTTCAAGAAGAAAAATCTGCACAAAAGCTTGAGTACTCCAATTCTGAGTTCTACTATTTCTTCATCTATCACAACAGAACTTCCAAGAAGTTCAAGCCAAATGTTTGATGATGATGATCACGAGGGAGCTTTTGAGGAGATGCTTCAGTACATGGGAACAAAGACCTGCAAGGAAGAAATTACTGATCATCATCTTCATCCCATTCACACAGGTATCAGCAATCACATCAATGGCTACCATGATCATCATAATGATAGGTTCCTGAAACTTCCAAGTCTCGAGAGCCCAAAATCCACAAGCAGCCAGAACTATTACCAGCCTATTATCAATAATCATGAAGACATGGTCATAGATCAGAATGAAGGCACAGTTATGAACCAGCATCGACATTACCAGCACGTGGACGACTCGGCCAGCCTCACCAACTGGGCAGCGCTTGATCGTTTGGTGGCTTCACAACTGAATGGCGGCCAGGAAACCGGGTCGTCTAGGCAATTTGCTTGCTTAATTGAACCCACCCTTAATGCATTTTGCACTAGTACCACTGATAACGAACTCCAATTACCAAGTACACTACGATCCTCATCATCATCGAATTCATCCAGCAAATCATACCATGCCACCCAACAGGACTACTACACCAACGAAATCGACCTGTGGAGTACTTTTGCTGCTGCAAAACTGCAATCATCATCACCTTTGTCATCCTCCGACGAATTATACCACGTGTCGAATGGTCATATATAA

Protein Analysis

420

Amino Acids

47.54

Weight (kDa)

6.15

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 143 1.9e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 686
AccB7I CCANNNNNTGG 1 cut(s) 913
AccII CGCG 1 cut(s) 144
AciI CCGC 4 cut(s) 142, 209, 340, 981
AclWI GGATC 3 cut(s) 350, 416, 1086
AcoI YGGCCR 4 cut(s) 307, 391, 924, 982
AcsI RAATTY 1 cut(s) 1108
AcuI CTGAAG 3 cut(s) 93, 214, 641
AcvI CACGTG 2 cut(s) 913, 1240
AfaI GTAC 6 cut(s) 92, 547, 662, 1054, 1084, 1177
AfeI AGCGCT 1 cut(s) 948
AfiI CCNNNNNNNGG 5 cut(s) 120, 280, 294, 316, 913
AflII CTTAAG 1 cut(s) 97
AflIII ACRYGT 1 cut(s) 1239
AgsI TTSAA 3 cut(s) 517, 606, 1025
AhlI ACTAGT 2 cut(s) 452, 1049
AjnI CCWGG 2 cut(s) 49, 984
AjuI GAANNNNNNNTTGG 2 cut(s) 544, 576
AleI CACNNNNGTG 1 cut(s) 470
AluBI AGCT 6 cut(s) 82, 163, 383, 444, 540, 641
AluI AGCT 6 cut(s) 82, 163, 383, 444, 540, 641
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 3 cut(s) 115, 463, 794
AlwI GGATC 3 cut(s) 350, 416, 1086
AlwNI CAGNNNCTG 1 cut(s) 333
Ama87I CYCGRG 1 cut(s) 791
Aor51HI AGCGCT 1 cut(s) 948
AoxI GGCC 6 cut(s) 300, 307, 376, 391, 924, 982
ApeKI GCWGC 8 cut(s) 284, 327, 444, 482, 813, 944, 1184, 1187
ApoI RAATTY 1 cut(s) 1108
AspLEI GCGC 1 cut(s) 949
AsuC2I CCSGG 1 cut(s) 994
AsuHPI GGTGA 2 cut(s) 925, 1200
AvaI CYCGRG 1 cut(s) 791
BaeI ACNNNNGTAYC 2 cut(s) 709, 742
BalI TGGCCA 1 cut(s) 393
BanII GRGCYC 2 cut(s) 385, 800
BauI CACGAG 2 cut(s) 416, 632
BbrPI CACGTG 2 cut(s) 913, 1240
BbsI GAAGAC 2 cut(s) 362, 858
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 8 cut(s) 271, 339, 431, 494, 825, 956, 1171, 1174
BccI CCATC 1 cut(s) 489
BceAI ACGGC 3 cut(s) 154, 294, 297
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BciT130I CCWGG 2 cut(s) 51, 986
BclI TGATCA 3 cut(s) 628, 697, 754
BcnI CCSGG 1 cut(s) 994
BcoDI GTCTC 3 cut(s) 115, 463, 794
BcuI ACTAGT 2 cut(s) 452, 1049
BfaI CTAG 3 cut(s) 453, 1002, 1050
BfmI CTRYAG 1 cut(s) 334
BfoI RGCGCY 1 cut(s) 950
BfrI CTTAAG 1 cut(s) 97
BfuAI ACCTGC 1 cut(s) 686
BisI GCNGC 9 cut(s) 285, 328, 445, 483, 814, 945, 982, 1185, 1188
BlsI GCNGC 9 cut(s) 286, 329, 446, 484, 815, 946, 983, 1186, 1189
BmcAI AGTACT 3 cut(s) 92, 547, 1177
Bme1390I CCNGG 3 cut(s) 51, 986, 994
BmeT110I CYCGRG 1 cut(s) 791
BmiI GGNNCC 1 cut(s) 773
BmrFI CCNGG 3 cut(s) 51, 986, 994
BmrI ACTGGG 1 cut(s) 949
BmsI GCATC 2 cut(s) 642, 904
BmuI ACTGGG 1 cut(s) 949
BpiI GAAGAC 2 cut(s) 362, 858
BplI GAGNNNNNCTC 2 cut(s) 343, 375
BpuEI CTTGAG 3 cut(s) 24, 185, 562
BpuMI CCSGG 1 cut(s) 994
BsaAI YACGTR 2 cut(s) 913, 1240
BsaBI GATNNNNATC 4 cut(s) 150, 627, 702, 1096
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 170, 388
Bsc4I CCNNNNNNNGG 5 cut(s) 120, 280, 294, 316, 913
Bse1I ACTGG 3 cut(s) 262, 310, 944
Bse8I GATNNNNATC 4 cut(s) 150, 627, 702, 1096
BseBI CCWGG 2 cut(s) 51, 986
BseDI CCNNGG 2 cut(s) 170, 388
BseGI GGATG 7 cut(s) 64, 138, 139, 500, 709, 1112, 1217
BseJI GATNNNNATC 4 cut(s) 150, 627, 702, 1096
BseLI CCNNNNNNNGG 5 cut(s) 120, 280, 294, 316, 913
BseMII CTCAG 1 cut(s) 548
BseNI ACTGG 3 cut(s) 262, 310, 944
BseRI GAGGAG 3 cut(s) 92, 503, 662
BseXI GCAGC 8 cut(s) 271, 339, 431, 494, 825, 956, 1171, 1174
BsgI GTGCAG 1 cut(s) 515
Bsh1236I CGCG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 471
BshFI GGCC 6 cut(s) 302, 309, 378, 393, 926, 984
BsiEI CGRYCG 1 cut(s) 471
BsiHKAI GWGCWC 1 cut(s) 385
BsiHKCI CYCGRG 1 cut(s) 791
BsiSI CCGG 2 cut(s) 288, 993
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 5 cut(s) 120, 280, 294, 316, 913
BsmAI GTCTC 3 cut(s) 115, 463, 794
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 6 cut(s) 302, 309, 378, 393, 926, 984
Bso31I GGTCTC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 791
Bsp1286I GDGCHC 2 cut(s) 385, 800
Bsp19I CCATGG 1 cut(s) 388
BspACI CCGC 4 cut(s) 142, 209, 340, 981
BspANI GGCC 6 cut(s) 302, 309, 378, 393, 926, 984
BspCNI CTCAG 1 cut(s) 549
BspFNI CGCG 1 cut(s) 144
BspHI TCATGA 1 cut(s) 847
BspLI GGNNCC 1 cut(s) 773
BspMAI CTGCAG 1 cut(s) 338
BspMI ACCTGC 1 cut(s) 686
BspPI GGATC 3 cut(s) 350, 416, 1086
BspTI CTTAAG 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 115
BsrI ACTGG 3 cut(s) 262, 310, 944
BssECI CCNNGG 2 cut(s) 170, 388
BssSI CACGAG 2 cut(s) 416, 632
BssT1I CCWWGG 1 cut(s) 388
Bst2BI CACGAG 2 cut(s) 416, 632
Bst2UI CCWGG 2 cut(s) 51, 986
Bst4CI ACNGT 3 cut(s) 275, 469, 883
Bst6I CTCTTC 1 cut(s) 69
BstAFI CTTAAG 1 cut(s) 97
BstAPI GCANNNNNTGC 2 cut(s) 284, 333
BstBAI YACGTR 2 cut(s) 913, 1240
BstC8I GCNNGC 3 cut(s) 338, 928, 1015
BstDEI CTNAG 1 cut(s) 557
BstDSI CCRYGG 2 cut(s) 170, 388
BstF5I GGATG 7 cut(s) 64, 138, 139, 500, 709, 1112, 1217
BstFNI CGCG 1 cut(s) 144
BstH2I RGCGCY 1 cut(s) 950
BstHHI GCGC 1 cut(s) 949
BstMAI GTCTC 3 cut(s) 115, 463, 794
BstMCI CGRYCG 1 cut(s) 471
BstMWI GCNNNNNNNGC 2 cut(s) 284, 333
BstNI CCWGG 2 cut(s) 51, 986
BstSCI CCNGG 3 cut(s) 49, 984, 992
BstSFI CTRYAG 1 cut(s) 334
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 8 cut(s) 271, 339, 431, 494, 825, 956, 1171, 1174
BstV2I GAAGAC 2 cut(s) 362, 858
BsuRI GGCC 6 cut(s) 302, 309, 378, 393, 926, 984
BtgI CCRYGG 2 cut(s) 170, 388
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 7 cut(s) 64, 138, 139, 500, 709, 1112, 1217
BtsIMutI CAGTG 2 cut(s) 303, 1056
BveI ACCTGC 1 cut(s) 686
Cac8I GCNNGC 3 cut(s) 338, 928, 1015
CaiI CAGNNNCTG 1 cut(s) 333
CciI TCATGA 1 cut(s) 847
CfoI GCGC 1 cut(s) 949
Csp6I GTAC 6 cut(s) 91, 546, 661, 1053, 1083, 1176
CviAII CATG 7 cut(s) 389, 412, 664, 752, 848, 856, 1130
CviQI GTAC 6 cut(s) 91, 546, 661, 1053, 1083, 1176
DdeI CTNAG 1 cut(s) 557
EaeI YGGCCR 4 cut(s) 307, 391, 924, 982
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
EciI GGCGGA 1 cut(s) 355
Ecl136II GAGCTC 1 cut(s) 383
Eco130I CCWWGG 1 cut(s) 388
Eco24I GRGCYC 2 cut(s) 385, 800
Eco31I GGTCTC 1 cut(s) 115
Eco47III AGCGCT 1 cut(s) 948
Eco53kI GAGCTC 1 cut(s) 383
Eco57I CTGAAG 3 cut(s) 93, 214, 641
Eco72I CACGTG 2 cut(s) 913, 1240
Eco88I CYCGRG 1 cut(s) 791
EcoICRI GAGCTC 1 cut(s) 383
EcoRI GAATTC 1 cut(s) 1108
EcoRII CCWGG 2 cut(s) 49, 984
EcoT14I CCWWGG 1 cut(s) 388
EcoT22I ATGCAT 1 cut(s) 1042
EcoT38I GRGCYC 2 cut(s) 385, 800
ErhI CCWWGG 1 cut(s) 388
FaeI CATG 7 cut(s) 392, 415, 667, 755, 851, 859, 1133
FaqI GGGAC 1 cut(s) 29
FatI CATG 7 cut(s) 388, 411, 663, 751, 847, 855, 1129
FbaI TGATCA 3 cut(s) 628, 697, 754
Fnu4HI GCNGC 9 cut(s) 285, 328, 445, 483, 814, 945, 982, 1185, 1188
FokI GGATG 7 cut(s) 51, 125, 146, 507, 696, 1099, 1204
FriOI GRGCYC 2 cut(s) 385, 800
Fsp4HI GCNGC 9 cut(s) 285, 328, 445, 483, 814, 945, 982, 1185, 1188
FspBI CTAG 3 cut(s) 453, 1002, 1050
GlaI GCGC 1 cut(s) 948
GluI GCNGC 9 cut(s) 285, 328, 445, 483, 814, 945, 982, 1185, 1188
HaeII RGCGCY 1 cut(s) 950
HaeIII GGCC 6 cut(s) 302, 309, 378, 393, 926, 984
HapII CCGG 2 cut(s) 288, 993
HhaI GCGC 1 cut(s) 949
Hin1II CATG 7 cut(s) 392, 415, 667, 755, 851, 859, 1133
Hin6I GCGC 1 cut(s) 947
HinP1I GCGC 1 cut(s) 947
HindIII AAGCTT 2 cut(s) 161, 538
HinfI GANTC 5 cut(s) 291, 358, 426, 510, 920
HpaII CCGG 2 cut(s) 288, 993
HphI GGTGA 2 cut(s) 925, 1200
Hpy166II GTNNAC 2 cut(s) 916, 1085
Hpy188I TCNGA 5 cut(s) 59, 403, 558, 870, 1225
Hpy188III TCNNGA 9 cut(s) 131, 295, 460, 517, 632, 775, 791, 793, 848
Hpy8I GTNNAC 2 cut(s) 916, 1085
Hpy99I CGWCG 2 cut(s) 434, 1229
HpyAV CCTTC 3 cut(s) 100, 292, 869
HpyCH4III ACNGT 3 cut(s) 275, 469, 883
HpyCH4IV ACGT 3 cut(s) 12, 912, 1239
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 333
HpyF3I CTNAG 1 cut(s) 557
HpySE526I ACGT 3 cut(s) 12, 912, 1239
Hsp92II CATG 7 cut(s) 392, 415, 667, 755, 851, 859, 1133
HspAI GCGC 1 cut(s) 947
Ksp22I TGATCA 3 cut(s) 628, 697, 754
LmnI GCTCC 3 cut(s) 79, 388, 638
Lsp1109I GCAGC 8 cut(s) 271, 339, 431, 494, 825, 956, 1171, 1174
LweI GCATC 2 cut(s) 642, 904
MaeI CTAG 3 cut(s) 453, 1002, 1050
MaeII ACGT 3 cut(s) 12, 912, 1239
MaeIII GTNAC 1 cut(s) 311
MhlI GDGCHC 2 cut(s) 385, 800
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 7 cut(s) 552, 690, 1007, 1020, 1073, 1108, 1229
MluNI TGGCCA 1 cut(s) 393
MlyI GAGTC 3 cut(s) 352, 420, 914
MmeI TCCRAC 2 cut(s) 92, 1248
Mox20I TGGCCA 1 cut(s) 393
Mph1103I ATGCAT 1 cut(s) 1042
MscI TGGCCA 1 cut(s) 393
MseI TTAA 3 cut(s) 98, 1019, 1035
MslI CAYNNNNRTG 5 cut(s) 23, 470, 741, 762, 884
Msp20I TGGCCA 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 444
MspCI CTTAAG 1 cut(s) 97
MspI CCGG 2 cut(s) 288, 993
MspR9I CCNGG 3 cut(s) 51, 986, 994
MvaI CCWGG 2 cut(s) 51, 986
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 284, 333
NciI CCSGG 1 cut(s) 994
NcoI CCATGG 1 cut(s) 388
NlaIII CATG 7 cut(s) 392, 415, 667, 755, 851, 859, 1133
NlaIV GGNNCC 1 cut(s) 773
NmeAIII GCCGAG 2 cut(s) 404, 902
NmuCI GTSAC 1 cut(s) 311
NsiI ATGCAT 1 cut(s) 1042
OliI CACNNNNGTG 1 cut(s) 470
PaeR7I CTCGAG 1 cut(s) 791
PagI TCATGA 1 cut(s) 847
PcsI WCGNNNNNNNCGW 1 cut(s) 271
PfeI GAWTC 2 cut(s) 291, 510
PflFI GACNNNGTC 2 cut(s) 317, 857
PflMI CCANNNNNTGG 1 cut(s) 913
PkrI GCNGC 9 cut(s) 286, 329, 446, 484, 815, 946, 983, 1186, 1189
PleI GAGTC 3 cut(s) 352, 420, 914
PmaCI CACGTG 2 cut(s) 913, 1240
PmlI CACGTG 2 cut(s) 913, 1240
PpsI GAGTC 3 cut(s) 352, 420, 914
Ppu21I YACGTR 2 cut(s) 913, 1240
Psp124BI GAGCTC 1 cut(s) 385
Psp6I CCWGG 2 cut(s) 49, 984
PspCI CACGTG 2 cut(s) 913, 1240
PspGI CCWGG 2 cut(s) 49, 984
PspN4I GGNNCC 1 cut(s) 773
PsrI GAACNNNNNNTAC 2 cut(s) 1059, 1091
PstI CTGCAG 1 cut(s) 338
PstNI CAGNNNCTG 1 cut(s) 333
PsyI GACNNNGTC 2 cut(s) 317, 857
PvuII CAGCTG 1 cut(s) 444
RsaI GTAC 6 cut(s) 92, 547, 662, 1054, 1084, 1177
RsaNI GTAC 6 cut(s) 91, 546, 661, 1053, 1083, 1176
RseI CAYNNNNRTG 5 cut(s) 23, 470, 741, 762, 884
SacI GAGCTC 1 cut(s) 385
SaqAI TTAA 3 cut(s) 98, 1019, 1035
SatI GCNGC 9 cut(s) 285, 328, 445, 483, 814, 945, 982, 1185, 1188
ScaI AGTACT 3 cut(s) 92, 547, 1177
SchI GAGTC 3 cut(s) 352, 420, 914
ScrFI CCNGG 3 cut(s) 51, 986, 994
SduI GDGCHC 2 cut(s) 385, 800
SfaNI GCATC 2 cut(s) 642, 904
SfcI CTRYAG 1 cut(s) 334
Sfr274I CTCGAG 1 cut(s) 791
SlaI CTCGAG 1 cut(s) 791
SmiMI CAYNNNNRTG 5 cut(s) 23, 470, 741, 762, 884
SmlI CTYRAG 5 cut(s) 39, 97, 164, 541, 791
SmoI CTYRAG 5 cut(s) 39, 97, 164, 541, 791
SpeI ACTAGT 2 cut(s) 452, 1049
Sse9I AATT 7 cut(s) 552, 690, 1007, 1020, 1073, 1108, 1229
SsiI CCGC 4 cut(s) 142, 209, 340, 981
SspMI CTAG 3 cut(s) 453, 1002, 1050
SstI GAGCTC 1 cut(s) 385
StyD4I CCNGG 3 cut(s) 49, 984, 992
StyI CCWWGG 1 cut(s) 388
TaaI ACNGT 3 cut(s) 275, 469, 883
TaiI ACGT 3 cut(s) 15, 915, 1242
TaqI TCGA 8 cut(s) 150, 429, 461, 792, 898, 1106, 1164, 1244
TasI AATT 7 cut(s) 552, 690, 1007, 1020, 1073, 1108, 1229
TatI WGTACW 5 cut(s) 90, 545, 660, 1082, 1175
TauI GCSGC 1 cut(s) 984
TfiI GAWTC 2 cut(s) 291, 510
Tru1I TTAA 3 cut(s) 98, 1019, 1035
Tru9I TTAA 3 cut(s) 98, 1019, 1035
TscAI CASTG 2 cut(s) 310, 1063
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 8 cut(s) 284, 327, 444, 482, 813, 944, 1184, 1187
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 7 cut(s) 53, 564, 698, 864, 888, 902, 1101
TspRI CASTG 2 cut(s) 310, 1063
Tth111I GACNNNGTC 2 cut(s) 317, 857
Van91I CCANNNNNTGG 1 cut(s) 913
Vha464I CTTAAG 1 cut(s) 97
XapI RAATTY 1 cut(s) 1108
XcmI CCANNNNNNNNNTGG 1 cut(s) 1244
XhoI CTCGAG 1 cut(s) 791
XspI CTAG 3 cut(s) 453, 1002, 1050
ZrmI AGTACT 3 cut(s) 92, 547, 1177
Zsp2I ATGCAT 1 cut(s) 1042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.