RLG00000027761
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
14899274 .. 14900534
1261 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027761

Sequence Viewer

Length: 1053 bp
ATGACTGAAAACATGAGTATATCTGTGAACGGGCAATCTCAAGTCCCTCCAGGTTTCAGATTTCATCCGACCGAAGAGGAGCTCTTGCAGTACTACTTGAGGAAGAAGGTCTCCGGTCAGAGGATTGATCTCGATGTCATCCGCGAGGTCGTTCTCAATAAACTTGAACCATGGGACGTCCAAGAAAAGTGCAACATAGGAACCACACCACAAAATGATTGGTATTTCTTCAGCCACAAGGACAAGAAGTATCCTACCGGAACACGCACAAATCGTGCAACAGCTGCCGGGTTCTGGAAGGCCACTGGCCGTGATAAGGTGATACGCAGCAACTGCAAGCGGATCGGTATGAGGAAAACTCTTGTGTTCTACAAAGGAAGAGCCCCCCGTGGCCAAAAATCTGATTGGATCATGCACGAGTATAGACTCGACGACAACACTAGCAGAATCACTAATGTCTCCGTTGTCGTTGGGGAGGCATCTCAAGAGGAGGGATGGGTGGTTTGCAGAATCTTCAAGAAGAAAAATCTTCACAAAACCATAGACAGCCCAATTTTGATTGCACCAACTTCATCTATCACAACAGATAATATTACAAGTATCTTTGTTAGTTCATGTGATTATAATGACGAGGAAACTTTGAAGCATATACTTGACTGCATGGGATCAAGGACCTGCAAGGAAGAAACTAATGAAGCAAACAACTCATTAATCATGAACCACATTCATGGGTTTCATGACGATGATGATAGGTTCTTGAATCTTCCTAGCCTAGAGAGCCCAAACTCGTCTGCAGAGAATGATGACCCGGTGGGTCATCAACGCGTGGACTCGGTTGGCCTCACCAACTGGGCAGCGCTTGATAGTTTCGTGGCTGCACAACTCGATGGCCGTGAAACGATGACGTACCCGGAATCAGGGAACTGCTTCAGTACTGATCACCATGACCATGATTATCATGATCATGAGCTCCAATTACCAACTACTCTGAGATCATCGAATTCAGCCAGCAACGAGATCGAGCTGTGGCCTACTTTTGCTCCACATAGATGA

Protein Analysis

351

Amino Acids

39.95

Weight (kDa)

5.84

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 143 3.5e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 624
AatII GACGTC 1 cut(s) 180
Acc36I ACCTGC 1 cut(s) 683
AccII CGCG 2 cut(s) 144, 825
AciI CCGC 2 cut(s) 142, 340
AclWI GGATC 3 cut(s) 350, 416, 673
AcoI YGGCCR 3 cut(s) 307, 391, 889
AcsI RAATTY 1 cut(s) 1000
AcuI CTGAAG 2 cut(s) 214, 913
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 3 cut(s) 92, 908, 934
AfeI AGCGCT 1 cut(s) 858
AfiI CCNNNNNNNGG 4 cut(s) 120, 294, 316, 917
AflIII ACRYGT 1 cut(s) 823
AgsI TTSAA 4 cut(s) 167, 517, 643, 760
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 4 cut(s) 82, 284, 970, 1024
AluI AGCT 4 cut(s) 82, 284, 970, 1024
Alw21I GWGCWC 2 cut(s) 84, 972
Alw26I GTCTC 2 cut(s) 115, 463
AlwI GGATC 3 cut(s) 350, 416, 673
AlwNI CAGNNNCTG 1 cut(s) 333
Aor51HI AGCGCT 1 cut(s) 858
AoxI GGCC 6 cut(s) 300, 307, 391, 838, 889, 1028
ApeKI GCWGC 4 cut(s) 284, 327, 854, 875
ApoI RAATTY 1 cut(s) 1000
AseI ATTAAT 1 cut(s) 710
Asp700I GAANNNNTTC 1 cut(s) 926
AspLEI GCGC 1 cut(s) 859
AspS9I GGNCC 1 cut(s) 672
AsuC2I CCSGG 3 cut(s) 289, 809, 911
AsuHPI GGTGA 3 cut(s) 331, 835, 932
AvaII GGWCC 1 cut(s) 672
BalI TGGCCA 1 cut(s) 393
BanII GRGCYC 4 cut(s) 84, 385, 782, 972
BauI CACGAG 1 cut(s) 416
Bbv12I GWGCWC 2 cut(s) 84, 972
BbvI GCAGC 4 cut(s) 271, 339, 862, 866
BccI CCATC 2 cut(s) 489, 881
BceAI ACGGC 2 cut(s) 294, 876
BcgI CGANNNNNNTGC 4 cut(s) 325, 359, 1000, 1034
BciT130I CCWGG 1 cut(s) 51
BciVI GTATCC 1 cut(s) 261
BclI TGATCA 2 cut(s) 937, 961
BcnI CCSGG 3 cut(s) 289, 809, 911
BcoDI GTCTC 2 cut(s) 115, 463
BfaI CTAG 3 cut(s) 441, 768, 773
BfmI CTRYAG 1 cut(s) 792
BfoI RGCGCY 1 cut(s) 860
BfuAI ACCTGC 1 cut(s) 683
BfuI GTATCC 1 cut(s) 261
BisI GCNGC 4 cut(s) 285, 328, 855, 876
BlsI GCNGC 4 cut(s) 286, 329, 856, 877
BmcAI AGTACT 2 cut(s) 92, 934
Bme1390I CCNGG 4 cut(s) 51, 289, 809, 911
Bme18I GGWCC 1 cut(s) 672
BmgT120I GGNCC 1 cut(s) 672
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 4 cut(s) 51, 289, 809, 911
BmrI ACTGGG 1 cut(s) 859
BmsI GCATC 1 cut(s) 488
BmuI ACTGGG 1 cut(s) 859
BplI GAGNNNNNCTC 2 cut(s) 343, 375
BpmI CTGGAG 1 cut(s) 33
BpuEI CTTGAG 3 cut(s) 24, 118, 468
BpuMI CCSGG 3 cut(s) 289, 809, 911
BsaHI GRCGYC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 170, 388
BsaWI WCCGGW 2 cut(s) 113, 257
BsaXI ACNNNNNCTCC 1 cut(s) 1024
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 294, 316, 917
Bse1I ACTGG 2 cut(s) 310, 854
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 170, 388
BseGI GGATG 3 cut(s) 64, 138, 500
BseLI CCNNNNNNNGG 4 cut(s) 120, 294, 316, 917
BseMII CTCAG 1 cut(s) 980
BseNI ACTGG 2 cut(s) 310, 854
BseRI GAGGAG 2 cut(s) 92, 503
BseXI GCAGC 4 cut(s) 271, 339, 862, 866
BsgI GTGCAG 1 cut(s) 861
Bsh1236I CGCG 2 cut(s) 144, 825
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 6 cut(s) 302, 309, 393, 840, 891, 1030
BsiEI CGRYCG 1 cut(s) 72
BsiHKAI GWGCWC 2 cut(s) 84, 972
BsiSI CCGG 5 cut(s) 114, 258, 288, 809, 911
BslFI GGGAC 2 cut(s) 29, 188
BslI CCNNNNNNNGG 4 cut(s) 120, 294, 316, 917
BsmAI GTCTC 2 cut(s) 115, 463
BsmFI GGGAC 2 cut(s) 29, 188
BsnI GGCC 6 cut(s) 302, 309, 393, 840, 891, 1030
Bso31I GGTCTC 1 cut(s) 115
Bsp1286I GDGCHC 4 cut(s) 84, 385, 782, 972
Bsp143I GATC 8 cut(s) 127, 342, 408, 665, 937, 961, 992, 1017
Bsp19I CCATGG 1 cut(s) 170
BspACI CCGC 2 cut(s) 142, 340
BspANI GGCC 6 cut(s) 302, 309, 393, 840, 891, 1030
BspCNI CTCAG 1 cut(s) 981
BspFNI CGCG 2 cut(s) 144, 825
BspHI TCATGA 4 cut(s) 714, 736, 958, 964
BspLI GGNNCC 1 cut(s) 202
BspMAI CTGCAG 1 cut(s) 796
BspMI ACCTGC 1 cut(s) 683
BspPI GGATC 3 cut(s) 350, 416, 673
BspQI GCTCTTC 1 cut(s) 373
BspTNI GGTCTC 1 cut(s) 115
BsrI ACTGG 2 cut(s) 310, 854
BssECI CCNNGG 2 cut(s) 170, 388
BssMI GATC 8 cut(s) 127, 342, 408, 665, 937, 961, 992, 1017
BssNI GRCGYC 1 cut(s) 177
BssSI CACGAG 1 cut(s) 416
BssT1I CCWWGG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 416
Bst2UI CCWGG 1 cut(s) 51
Bst6I CTCTTC 2 cut(s) 69, 373
BstACI GRCGYC 1 cut(s) 177
BstAPI GCANNNNNTGC 2 cut(s) 284, 333
BstC8I GCNNGC 2 cut(s) 338, 1009
BstDEI CTNAG 1 cut(s) 989
BstDSI CCRYGG 2 cut(s) 170, 388
BstF5I GGATG 3 cut(s) 64, 138, 500
BstFNI CGCG 2 cut(s) 144, 825
BstH2I RGCGCY 1 cut(s) 860
BstHHI GCGC 1 cut(s) 859
BstKTI GATC 8 cut(s) 130, 345, 411, 668, 940, 964, 995, 1020
BstMAI GTCTC 2 cut(s) 115, 463
BstMBI GATC 8 cut(s) 127, 342, 408, 665, 937, 961, 992, 1017
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 3 cut(s) 284, 333, 777
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 4 cut(s) 49, 287, 807, 909
BstSFI CTRYAG 1 cut(s) 792
BstUI CGCG 2 cut(s) 144, 825
BstV1I GCAGC 4 cut(s) 271, 339, 862, 866
BstXI CCANNNNNNTGG 1 cut(s) 728
BsuI GTATCC 1 cut(s) 261
BsuRI GGCC 6 cut(s) 302, 309, 393, 840, 891, 1030
BtgI CCRYGG 2 cut(s) 170, 388
BtsCI GGATG 3 cut(s) 64, 138, 500
BtsIMutI CAGTG 1 cut(s) 303
BveI ACCTGC 1 cut(s) 683
Cac8I GCNNGC 2 cut(s) 338, 1009
CaiI CAGNNNCTG 1 cut(s) 333
CciI TCATGA 4 cut(s) 714, 736, 958, 964
CfoI GCGC 1 cut(s) 859
Cfr13I GGNCC 1 cut(s) 672
Csp6I GTAC 3 cut(s) 91, 907, 933
CviQI GTAC 3 cut(s) 91, 907, 933
DdeI CTNAG 1 cut(s) 989
DpnI GATC 8 cut(s) 129, 344, 410, 667, 939, 963, 994, 1019
DpnII GATC 8 cut(s) 127, 342, 408, 665, 937, 961, 992, 1017
EaeI YGGCCR 3 cut(s) 307, 391, 889
Eam1104I CTCTTC 2 cut(s) 69, 373
EarI CTCTTC 2 cut(s) 69, 373
Ecl136II GAGCTC 2 cut(s) 82, 970
Eco130I CCWWGG 1 cut(s) 170
Eco24I GRGCYC 4 cut(s) 84, 385, 782, 972
Eco31I GGTCTC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 672
Eco47III AGCGCT 1 cut(s) 858
Eco53kI GAGCTC 2 cut(s) 82, 970
Eco57I CTGAAG 2 cut(s) 214, 913
EcoICRI GAGCTC 2 cut(s) 82, 970
EcoO109I RGGNCCY 1 cut(s) 672
EcoRI GAATTC 1 cut(s) 1000
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 170
EcoT38I GRGCYC 4 cut(s) 84, 385, 782, 972
ErhI CCWWGG 1 cut(s) 170
FaqI GGGAC 2 cut(s) 29, 188
FbaI TGATCA 2 cut(s) 937, 961
Fnu4HI GCNGC 4 cut(s) 285, 328, 855, 876
FokI GGATG 3 cut(s) 51, 125, 507
FriOI GRGCYC 4 cut(s) 84, 385, 782, 972
Fsp4HI GCNGC 4 cut(s) 285, 328, 855, 876
FspBI CTAG 3 cut(s) 441, 768, 773
GlaI GCGC 1 cut(s) 858
GluI GCNGC 4 cut(s) 285, 328, 855, 876
GsuI CTGGAG 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 860
HaeIII GGCC 6 cut(s) 302, 309, 393, 840, 891, 1030
HapII CCGG 5 cut(s) 114, 258, 288, 809, 911
HhaI GCGC 1 cut(s) 859
Hin1I GRCGYC 1 cut(s) 177
Hin6I GCGC 1 cut(s) 857
HinP1I GCGC 1 cut(s) 857
HinfI GANTC 6 cut(s) 426, 447, 510, 760, 830, 914
HpaII CCGG 5 cut(s) 114, 258, 288, 809, 911
HphI GGTGA 3 cut(s) 331, 835, 932
Hpy166II GTNNAC 2 cut(s) 28, 829
Hpy188I TCNGA 5 cut(s) 59, 69, 120, 403, 990
Hpy188III TCNNGA 9 cut(s) 131, 295, 485, 517, 715, 737, 757, 959, 965
Hpy8I GTNNAC 2 cut(s) 28, 829
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 2 cut(s) 100, 292
HpyCH4IV ACGT 2 cut(s) 177, 905
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 333, 777
HpyF3I CTNAG 1 cut(s) 989
HpySE526I ACGT 2 cut(s) 177, 905
Hsp92I GRCGYC 1 cut(s) 177
HspAI GCGC 1 cut(s) 857
Ksp22I TGATCA 2 cut(s) 937, 961
Kzo9I GATC 8 cut(s) 127, 342, 408, 665, 937, 961, 992, 1017
LguI GCTCTTC 1 cut(s) 373
LmnI GCTCC 3 cut(s) 79, 975, 1045
Lsp1109I GCAGC 4 cut(s) 271, 339, 862, 866
LweI GCATC 1 cut(s) 488
MaeI CTAG 3 cut(s) 441, 768, 773
MaeII ACGT 2 cut(s) 177, 905
MalI GATC 8 cut(s) 129, 344, 410, 667, 939, 963, 994, 1019
MboI GATC 8 cut(s) 127, 342, 408, 665, 937, 961, 992, 1017
MboII GAAGA 9 cut(s) 86, 115, 220, 390, 505, 521, 532, 695, 755
MhlI GDGCHC 4 cut(s) 84, 385, 782, 972
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 3 cut(s) 552, 974, 1000
MluI ACGCGT 1 cut(s) 823
MluNI TGGCCA 1 cut(s) 393
MlyI GAGTC 2 cut(s) 420, 824
MmeI TCCRAC 1 cut(s) 92
Mox20I TGGCCA 1 cut(s) 393
MroXI GAANNNNTTC 1 cut(s) 926
MscI TGGCCA 1 cut(s) 393
MseI TTAA 1 cut(s) 710
MslI CAYNNNNRTG 5 cut(s) 726, 741, 948, 963, 1048
Msp20I TGGCCA 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 5 cut(s) 114, 258, 288, 809, 911
MspR9I CCNGG 4 cut(s) 51, 289, 809, 911
MvaI CCWGG 1 cut(s) 51
MvnI CGCG 2 cut(s) 144, 825
MwoI GCNNNNNNNGC 3 cut(s) 284, 333, 777
NciI CCSGG 3 cut(s) 289, 809, 911
NcoI CCATGG 1 cut(s) 170
NdeII GATC 8 cut(s) 127, 342, 408, 665, 937, 961, 992, 1017
NlaIV GGNNCC 1 cut(s) 202
PagI TCATGA 4 cut(s) 714, 736, 958, 964
PciSI GCTCTTC 1 cut(s) 373
PcsI WCGNNNNNNNCGW 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 926
PfeI GAWTC 4 cut(s) 447, 510, 760, 914
PkrI GCNGC 4 cut(s) 286, 329, 856, 877
PleI GAGTC 2 cut(s) 420, 824
PpsI GAGTC 2 cut(s) 420, 824
PpuMI RGGWCCY 1 cut(s) 672
PshBI ATTAAT 1 cut(s) 710
PsiI TTATAA 1 cut(s) 624
Psp124BI GAGCTC 2 cut(s) 84, 972
Psp5II RGGWCCY 1 cut(s) 672
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 1 cut(s) 672
PspPPI RGGWCCY 1 cut(s) 672
PstI CTGCAG 1 cut(s) 796
PstNI CAGNNNCTG 1 cut(s) 333
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 3 cut(s) 92, 908, 934
RsaNI GTAC 3 cut(s) 91, 907, 933
RseI CAYNNNNRTG 5 cut(s) 726, 741, 948, 963, 1048
SacI GAGCTC 2 cut(s) 84, 972
SapI GCTCTTC 1 cut(s) 373
SaqAI TTAA 1 cut(s) 710
SatI GCNGC 4 cut(s) 285, 328, 855, 876
Sau3AI GATC 8 cut(s) 127, 342, 408, 665, 937, 961, 992, 1017
Sau96I GGNCC 1 cut(s) 672
ScaI AGTACT 2 cut(s) 92, 934
SchI GAGTC 2 cut(s) 420, 824
ScrFI CCNGG 4 cut(s) 51, 289, 809, 911
SduI GDGCHC 4 cut(s) 84, 385, 782, 972
SfaNI GCATC 1 cut(s) 488
SfcI CTRYAG 1 cut(s) 792
SinI GGWCC 1 cut(s) 672
SmiMI CAYNNNNRTG 5 cut(s) 726, 741, 948, 963, 1048
SmlI CTYRAG 3 cut(s) 39, 97, 483
SmoI CTYRAG 3 cut(s) 39, 97, 483
Sse9I AATT 3 cut(s) 552, 974, 1000
SsiI CCGC 2 cut(s) 142, 340
SspI AATATT 1 cut(s) 592
SspMI CTAG 3 cut(s) 441, 768, 773
SstI GAGCTC 2 cut(s) 84, 972
StyD4I CCNGG 4 cut(s) 49, 287, 807, 909
StyI CCWWGG 1 cut(s) 170
TaiI ACGT 2 cut(s) 180, 908
TaqI TCGA 5 cut(s) 132, 429, 885, 998, 1020
TaqII GACCGA 1 cut(s) 86
TasI AATT 3 cut(s) 552, 974, 1000
TatI WGTACW 2 cut(s) 90, 932
TfiI GAWTC 4 cut(s) 447, 510, 760, 914
Tru1I TTAA 1 cut(s) 710
Tru9I TTAA 1 cut(s) 710
TscAI CASTG 1 cut(s) 310
TseI GCWGC 4 cut(s) 284, 327, 854, 875
TspDTI ATGAA 7 cut(s) 53, 561, 603, 708, 716, 725, 731
TspGWI ACGGA 1 cut(s) 451
TspRI CASTG 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 672
VspI ATTAAT 1 cut(s) 710
XapI RAATTY 1 cut(s) 1000
XcmI CCANNNNNNNNNTGG 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 926
XspI CTAG 3 cut(s) 441, 768, 773
ZraI GACGTC 1 cut(s) 178
ZrmI AGTACT 2 cut(s) 92, 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.