RchiOBHm_Chr1g0360971
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005503
Physical Location & Seq
Reverse (-)
52912732 .. 52914256
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58591

Sequence Viewer

Length: 1266 bp
ATGACTGAAAACGTGAGTATATCTGTGAATGGACAATCTCAAGTCCCTCCTGGTTTCAGATTTCATCCAACTGAAGAGGAGCTCTTGCAGTACTACTTGAGGAAGAAGGTCTCCAATCAGAGGATTGATCTCGATGTTATCCGCGATGTCGATCTTAATAAGCTTGAGCCGTGGGATATACAAGAGAAGTGTAAGATAGGAACGACACCGCAAAATGATTGGTATTTTTTCAGCCACAAGGACAAGAAATACCCTACTGGAACTCGCACAAACCGTGCAACGGCTGCCGGATTCTGGAAGGCCACCGGCCGTGATAAGGTGATAAGCAGCAACTGCAGACGGATCGGTATGAGGAAGACTCTTGTGTTCTACAAAGGCCGAGCTCCCCACGGTCAAAAGTCCGATTGGATCATGCACGAGTATAGACTCGACGACAACACCAGCAGCATAACTAGTGTCTCGATCACTGTCGTGGGAGAGGCAGCAGAGGAGGGATGGGTGGTTTGCAGAATCTTCAAGAAGAAAAATCTCCACAAAAGCTTGAGTAGTCCAATTATGAGTACTACTATTTCTTCATCTATCACAGCAGAACTTACAAGAAGTTCAAGCCAAATGTTTGATGATGATGACGATCAGGAGGGAGCTTTTGAGGAAATGCTTCAGTACATAGGAACAAAGACCTGCAAGGAAGAGATTAATGATCATCATCTTCATCCCATTAACACAGGTATCAAAAATCACATCAATGGCTACCATGATCATGATGATAGGTTCCTGAAACTTCCAAGCCTCGAGAGCCCAAACTCCACCAGTAGCCAGAACTACTACCAGCCCATTATCAATCATGAGGACATGGTCATAGATCAGAATGAAGGTACAGTTATTAACCAGCATCTGAGTTATCAACAAGTGGACGACTCGGCCAGCCTCACCAACTGGGCAGCGCTAGATCGTTTGGTGGCTTCACAACTCAATGGCGGCCACGAAACCGGGTCGTCTAGGCAATTTGCTTGTTTAATTGAACCCACCATTAATGCATTTTGCAGTAGTAACAGTACCACTGATCATGAACTCCAATTACCAAGTACACTACGATCGTCAACTTCATCGAATTCATCCAGCAAATCATACCATGCCACCCATCAGGATTACAACACCAACGAAATTGACCTGTGGAGTACTGTTGCTGCTGCAAGCAGACTGCAATCATCATTACCTTTGCCATCCTCCGACGCCGTATGCCACGCGTCGAATGCTCCTATATAA

Protein Analysis

421

Amino Acids

47.35

Weight (kDa)

5.9

Isoelectric Point (pI)

48.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 143 1.9e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 689
AccII CGCG 2 cut(s) 144, 1247
AciI CCGC 3 cut(s) 142, 209, 978
AclWI GGATC 2 cut(s) 350, 416
AcoI YGGCCR 3 cut(s) 307, 921, 979
AcsI RAATTY 1 cut(s) 1111
AcuI CTGAAG 2 cut(s) 93, 644
AcyI GRCGYC 1 cut(s) 1233
AfaI GTAC 7 cut(s) 92, 562, 665, 877, 1057, 1087, 1180
AfeI AGCGCT 1 cut(s) 945
AfiI CCNNNNNNNGG 4 cut(s) 120, 280, 294, 316
AflIII ACRYGT 1 cut(s) 1245
AgsI TTSAA 3 cut(s) 517, 606, 1022
AhlI ACTAGT 1 cut(s) 452
AjnI CCWGG 1 cut(s) 49
AleI CACNNNNGTG 1 cut(s) 470
AluBI AGCT 5 cut(s) 82, 163, 383, 540, 644
AluI AGCT 5 cut(s) 82, 163, 383, 540, 644
Alw21I GWGCWC 2 cut(s) 84, 385
Alw26I GTCTC 2 cut(s) 115, 463
AlwI GGATC 2 cut(s) 350, 416
AlwNI CAGNNNCTG 2 cut(s) 333, 895
Ama87I CYCGRG 1 cut(s) 791
Aor51HI AGCGCT 1 cut(s) 945
AoxI GGCC 5 cut(s) 300, 307, 376, 921, 979
ApeKI GCWGC 7 cut(s) 284, 327, 444, 482, 941, 1187, 1190
ApoI RAATTY 1 cut(s) 1111
AseI ATTAAT 2 cut(s) 696, 1032
Asp700I GAANNNNTTC 1 cut(s) 657
AspLEI GCGC 1 cut(s) 946
AsuC2I CCSGG 1 cut(s) 991
AsuHPI GGTGA 2 cut(s) 331, 922
AvaI CYCGRG 1 cut(s) 791
BaeI ACNNNNGTAYC 2 cut(s) 712, 745
BanII GRGCYC 3 cut(s) 84, 385, 800
BauI CACGAG 1 cut(s) 416
BbsI GAAGAC 1 cut(s) 362
Bbv12I GWGCWC 2 cut(s) 84, 385
BbvI GCAGC 7 cut(s) 271, 339, 456, 494, 953, 1174, 1177
BccI CCATC 3 cut(s) 489, 1149, 1231
BceAI ACGGC 4 cut(s) 154, 294, 297, 1220
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BciT130I CCWGG 1 cut(s) 51
BclI TGATCA 3 cut(s) 700, 757, 1063
BcnI CCSGG 1 cut(s) 991
BcoDI GTCTC 2 cut(s) 115, 463
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 3 cut(s) 453, 947, 999
BfmI CTRYAG 1 cut(s) 334
BfoI RGCGCY 1 cut(s) 947
BfuAI ACCTGC 1 cut(s) 689
BisI GCNGC 8 cut(s) 285, 328, 445, 483, 942, 979, 1188, 1191
BlsI GCNGC 8 cut(s) 286, 329, 446, 484, 943, 980, 1189, 1192
BmcAI AGTACT 3 cut(s) 92, 562, 1180
Bme1390I CCNGG 2 cut(s) 51, 991
BmeT110I CYCGRG 1 cut(s) 791
BmiI GGNNCC 1 cut(s) 773
BmrFI CCNGG 2 cut(s) 51, 991
BmrI ACTGGG 1 cut(s) 946
BmsI GCATC 1 cut(s) 901
BmuI ACTGGG 1 cut(s) 946
BpiI GAAGAC 1 cut(s) 362
BplI GAGNNNNNCTC 2 cut(s) 343, 375
BpuEI CTTGAG 4 cut(s) 24, 118, 185, 562
BpuMI CCSGG 1 cut(s) 991
BsaBI GATNNNNATC 3 cut(s) 150, 630, 705
BsaHI GRCGYC 1 cut(s) 1233
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 170, 388
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 280, 294, 316
Bse118I RCCGGY 1 cut(s) 305
Bse1I ACTGG 3 cut(s) 262, 810, 941
Bse8I GATNNNNATC 3 cut(s) 150, 630, 705
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 170, 388
BseGI GGATG 5 cut(s) 64, 500, 712, 1115, 1223
BseJI GATNNNNATC 3 cut(s) 150, 630, 705
BseLI CCNNNNNNNGG 4 cut(s) 120, 280, 294, 316
BseMII CTCAG 1 cut(s) 887
BseNI ACTGG 3 cut(s) 262, 810, 941
BseRI GAGGAG 2 cut(s) 92, 503
BseX3I CGGCCG 1 cut(s) 307
BseXI GCAGC 7 cut(s) 271, 339, 456, 494, 953, 1174, 1177
Bsh1236I CGCG 2 cut(s) 144, 1247
Bsh1285I CGRYCG 2 cut(s) 310, 1097
BshFI GGCC 5 cut(s) 302, 309, 378, 923, 981
BsiEI CGRYCG 2 cut(s) 310, 1097
BsiHKAI GWGCWC 2 cut(s) 84, 385
BsiHKCI CYCGRG 1 cut(s) 791
BsiSI CCGG 3 cut(s) 288, 306, 990
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 4 cut(s) 120, 280, 294, 316
BsmAI GTCTC 2 cut(s) 115, 463
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 1258
BsnI GGCC 5 cut(s) 302, 309, 378, 923, 981
Bso31I GGTCTC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 791
Bsp1286I GDGCHC 3 cut(s) 84, 385, 800
BspACI CCGC 3 cut(s) 142, 209, 978
BspANI GGCC 5 cut(s) 302, 309, 378, 923, 981
BspCNI CTCAG 1 cut(s) 888
BspFNI CGCG 2 cut(s) 144, 1247
BspHI TCATGA 3 cut(s) 760, 844, 1066
BspLI GGNNCC 1 cut(s) 773
BspMAI CTGCAG 1 cut(s) 338
BspMI ACCTGC 1 cut(s) 689
BspPI GGATC 2 cut(s) 350, 416
BspTNI GGTCTC 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 305
BsrI ACTGG 3 cut(s) 262, 810, 941
BssAI RCCGGY 1 cut(s) 305
BssECI CCNNGG 2 cut(s) 170, 388
BssNI GRCGYC 1 cut(s) 1233
BssSI CACGAG 1 cut(s) 416
Bst2BI CACGAG 1 cut(s) 416
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 6 cut(s) 275, 392, 469, 880, 1055, 1183
Bst6I CTCTTC 2 cut(s) 69, 684
BstACI GRCGYC 1 cut(s) 1233
BstAPI GCANNNNNTGC 2 cut(s) 284, 333
BstC8I GCNNGC 2 cut(s) 925, 1195
BstDEI CTNAG 1 cut(s) 896
BstDSI CCRYGG 2 cut(s) 170, 388
BstF5I GGATG 5 cut(s) 64, 500, 712, 1115, 1223
BstFNI CGCG 2 cut(s) 144, 1247
BstH2I RGCGCY 1 cut(s) 947
BstHHI GCGC 1 cut(s) 946
BstMAI GTCTC 2 cut(s) 115, 463
BstMCI CGRYCG 2 cut(s) 310, 1097
BstMWI GCNNNNNNNGC 4 cut(s) 284, 333, 795, 1253
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 49, 989
BstSFI CTRYAG 1 cut(s) 334
BstUI CGCG 2 cut(s) 144, 1247
BstV1I GCAGC 7 cut(s) 271, 339, 456, 494, 953, 1174, 1177
BstV2I GAAGAC 1 cut(s) 362
BstZI CGGCCG 1 cut(s) 307
BsuRI GGCC 5 cut(s) 302, 309, 378, 923, 981
BtgI CCRYGG 2 cut(s) 170, 388
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 5 cut(s) 64, 500, 712, 1115, 1223
BtsIMutI CAGTG 2 cut(s) 465, 1059
BveI ACCTGC 1 cut(s) 689
Cac8I GCNNGC 2 cut(s) 925, 1195
CaiI CAGNNNCTG 2 cut(s) 333, 895
CciI TCATGA 3 cut(s) 760, 844, 1066
CfoI GCGC 1 cut(s) 946
Cfr10I RCCGGY 1 cut(s) 305
CseI GACGC 2 cut(s) 1236, 1241
Csp6I GTAC 7 cut(s) 91, 561, 664, 876, 1056, 1086, 1179
CviAII CATG 7 cut(s) 412, 755, 761, 845, 853, 1067, 1133
CviQI GTAC 7 cut(s) 91, 561, 664, 876, 1056, 1086, 1179
DdeI CTNAG 1 cut(s) 896
EaeI YGGCCR 3 cut(s) 307, 921, 979
EagI CGGCCG 1 cut(s) 307
Eam1104I CTCTTC 2 cut(s) 69, 684
EarI CTCTTC 2 cut(s) 69, 684
Ecl136II GAGCTC 2 cut(s) 82, 383
EclXI CGGCCG 1 cut(s) 307
Eco24I GRGCYC 3 cut(s) 84, 385, 800
Eco31I GGTCTC 1 cut(s) 115
Eco47III AGCGCT 1 cut(s) 945
Eco52I CGGCCG 1 cut(s) 307
Eco53kI GAGCTC 2 cut(s) 82, 383
Eco57I CTGAAG 2 cut(s) 93, 644
Eco88I CYCGRG 1 cut(s) 791
EcoICRI GAGCTC 2 cut(s) 82, 383
EcoRI GAATTC 1 cut(s) 1111
EcoRII CCWGG 1 cut(s) 49
EcoT22I ATGCAT 1 cut(s) 1039
EcoT38I GRGCYC 3 cut(s) 84, 385, 800
FaeI CATG 7 cut(s) 415, 758, 764, 848, 856, 1070, 1136
FaqI GGGAC 1 cut(s) 29
FatI CATG 7 cut(s) 411, 754, 760, 844, 852, 1066, 1132
FbaI TGATCA 3 cut(s) 700, 757, 1063
Fnu4HI GCNGC 8 cut(s) 285, 328, 445, 483, 942, 979, 1188, 1191
FokI GGATG 5 cut(s) 51, 507, 699, 1102, 1210
FriOI GRGCYC 3 cut(s) 84, 385, 800
Fsp4HI GCNGC 8 cut(s) 285, 328, 445, 483, 942, 979, 1188, 1191
FspBI CTAG 3 cut(s) 453, 947, 999
GlaI GCGC 1 cut(s) 945
GluI GCNGC 8 cut(s) 285, 328, 445, 483, 942, 979, 1188, 1191
HaeII RGCGCY 1 cut(s) 947
HaeIII GGCC 5 cut(s) 302, 309, 378, 923, 981
HapII CCGG 3 cut(s) 288, 306, 990
HgaI GACGC 2 cut(s) 1236, 1241
HhaI GCGC 1 cut(s) 946
Hin1I GRCGYC 1 cut(s) 1233
Hin1II CATG 7 cut(s) 415, 758, 764, 848, 856, 1070, 1136
Hin6I GCGC 1 cut(s) 944
HinP1I GCGC 1 cut(s) 944
HincII GTYRAC 1 cut(s) 1101
HindII GTYRAC 1 cut(s) 1101
HindIII AAGCTT 2 cut(s) 161, 538
HinfI GANTC 5 cut(s) 291, 358, 426, 510, 917
HpaII CCGG 3 cut(s) 288, 306, 990
HphI GGTGA 2 cut(s) 331, 922
Hpy166II GTNNAC 3 cut(s) 913, 1088, 1101
Hpy188I TCNGA 6 cut(s) 59, 120, 403, 867, 897, 1231
Hpy8I GTNNAC 3 cut(s) 913, 1088, 1101
Hpy99I CGWCG 3 cut(s) 434, 1235, 1252
HpyAV CCTTC 3 cut(s) 100, 292, 866
HpyCH4III ACNGT 6 cut(s) 275, 392, 469, 880, 1055, 1183
HpyCH4IV ACGT 1 cut(s) 12
HpyF10VI GCNNNNNNNGC 4 cut(s) 284, 333, 795, 1253
HpyF3I CTNAG 1 cut(s) 896
HpySE526I ACGT 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 1233
Hsp92II CATG 7 cut(s) 415, 758, 764, 848, 856, 1070, 1136
HspAI GCGC 1 cut(s) 944
Ksp22I TGATCA 3 cut(s) 700, 757, 1063
LmnI GCTCC 4 cut(s) 79, 388, 641, 1261
Lsp1109I GCAGC 7 cut(s) 271, 339, 456, 494, 953, 1174, 1177
LweI GCATC 1 cut(s) 901
MaeI CTAG 3 cut(s) 453, 947, 999
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 1049
MboII GAAGA 8 cut(s) 86, 115, 367, 505, 532, 564, 701, 701
MhlI GDGCHC 3 cut(s) 84, 385, 800
MluCI AATT 6 cut(s) 552, 1004, 1017, 1076, 1111, 1164
MluI ACGCGT 1 cut(s) 1245
MlyI GAGTC 3 cut(s) 352, 420, 911
MmeI TCCRAC 2 cut(s) 92, 1254
Mph1103I ATGCAT 1 cut(s) 1039
MroXI GAANNNNTTC 1 cut(s) 657
MseI TTAA 6 cut(s) 156, 696, 720, 885, 1016, 1032
MslI CAYNNNNRTG 3 cut(s) 470, 744, 759
MspI CCGG 3 cut(s) 288, 306, 990
MspR9I CCNGG 2 cut(s) 51, 991
Mva1269I GAATGC 1 cut(s) 1258
MvaI CCWGG 1 cut(s) 51
MvnI CGCG 2 cut(s) 144, 1247
MwoI GCNNNNNNNGC 4 cut(s) 284, 333, 795, 1253
NciI CCSGG 1 cut(s) 991
NlaIII CATG 7 cut(s) 415, 758, 764, 848, 856, 1070, 1136
NlaIV GGNNCC 1 cut(s) 773
NmeAIII GCCGAG 2 cut(s) 404, 899
NsiI ATGCAT 1 cut(s) 1039
OliI CACNNNNGTG 1 cut(s) 470
PaeR7I CTCGAG 1 cut(s) 791
PagI TCATGA 3 cut(s) 760, 844, 1066
PcsI WCGNNNNNNNCGW 1 cut(s) 271
PctI GAATGC 1 cut(s) 1258
PdmI GAANNNNTTC 1 cut(s) 657
PfeI GAWTC 2 cut(s) 291, 510
PflFI GACNNNGTC 1 cut(s) 854
PkrI GCNGC 8 cut(s) 286, 329, 446, 484, 943, 980, 1189, 1192
Ple19I CGATCG 1 cut(s) 1097
PleI GAGTC 3 cut(s) 352, 420, 911
PpsI GAGTC 3 cut(s) 352, 420, 911
PshBI ATTAAT 2 cut(s) 696, 1032
Psp124BI GAGCTC 2 cut(s) 84, 385
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 773
PsrI GAACNNNNNNTAC 2 cut(s) 1062, 1094
PstI CTGCAG 1 cut(s) 338
PstNI CAGNNNCTG 2 cut(s) 333, 895
PsyI GACNNNGTC 1 cut(s) 854
PvuI CGATCG 1 cut(s) 1097
RsaI GTAC 7 cut(s) 92, 562, 665, 877, 1057, 1087, 1180
RsaNI GTAC 7 cut(s) 91, 561, 664, 876, 1056, 1086, 1179
RseI CAYNNNNRTG 3 cut(s) 470, 744, 759
SacI GAGCTC 2 cut(s) 84, 385
SaqAI TTAA 6 cut(s) 156, 696, 720, 885, 1016, 1032
SatI GCNGC 8 cut(s) 285, 328, 445, 483, 942, 979, 1188, 1191
ScaI AGTACT 3 cut(s) 92, 562, 1180
SchI GAGTC 3 cut(s) 352, 420, 911
ScrFI CCNGG 2 cut(s) 51, 991
SduI GDGCHC 3 cut(s) 84, 385, 800
SfaNI GCATC 1 cut(s) 901
SfcI CTRYAG 1 cut(s) 334
Sfr274I CTCGAG 1 cut(s) 791
SlaI CTCGAG 1 cut(s) 791
SmiMI CAYNNNNRTG 3 cut(s) 470, 744, 759
SmlI CTYRAG 5 cut(s) 39, 97, 164, 541, 791
SmoI CTYRAG 5 cut(s) 39, 97, 164, 541, 791
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 6 cut(s) 552, 1004, 1017, 1076, 1111, 1164
SsiI CCGC 3 cut(s) 142, 209, 978
SspMI CTAG 3 cut(s) 453, 947, 999
SstI GAGCTC 2 cut(s) 84, 385
StyD4I CCNGG 2 cut(s) 49, 989
TaaI ACNGT 6 cut(s) 275, 392, 469, 880, 1055, 1183
TaiI ACGT 1 cut(s) 15
TaqI TCGA 7 cut(s) 132, 150, 429, 461, 792, 1109, 1250
TasI AATT 6 cut(s) 552, 1004, 1017, 1076, 1111, 1164
TatI WGTACW 5 cut(s) 90, 560, 663, 1085, 1178
TauI GCSGC 1 cut(s) 981
TfiI GAWTC 2 cut(s) 291, 510
Tru1I TTAA 6 cut(s) 156, 696, 720, 885, 1016, 1032
Tru9I TTAA 6 cut(s) 156, 696, 720, 885, 1016, 1032
TscAI CASTG 2 cut(s) 472, 1066
TseI GCWGC 7 cut(s) 284, 327, 444, 482, 941, 1187, 1190
TspDTI ATGAA 7 cut(s) 53, 564, 701, 885, 1083, 1095, 1104
TspGWI ACGGA 1 cut(s) 355
TspRI CASTG 2 cut(s) 472, 1066
Tth111I GACNNNGTC 1 cut(s) 854
VspI ATTAAT 2 cut(s) 696, 1032
XapI RAATTY 1 cut(s) 1111
XhoI CTCGAG 1 cut(s) 791
XmnI GAANNNNTTC 1 cut(s) 657
XspI CTAG 3 cut(s) 453, 947, 999
ZrmI AGTACT 3 cut(s) 92, 562, 1180
Zsp2I ATGCAT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.