Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005503

Physical Location & Seq

Genomic Coordinates Reverse (-)

39232481 .. 39233735

Gene Structure 1255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG260400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGACTGAAAACATGAGTATATCTGTGAACGGGCAATCTCAAGTCCCTCCAGAAAAGTGCAACATAGGAACCACACCACAAAATGATTGGTATTTCTTCAGCCACAAGGACAAGAAGTATCCTACCGGAACACGCACAAATCGTGCAACAGCTGCCGGGTTCTGGAAGGCCACTGGCCGTGATAAGGTGATACGCAGCAACTGCAAGCGGATCGGTATGAGGAAAACTCTTGTGTTCTACAAAGGAAGAGCCCCCCGTGGCCAAAAATCTGATTGGATCATGCACGAGTATAGACTCGACGACAACACTAGCAGAATCACTGATGTCTCCGTTGTCGTTGGGGAGGCATCTCAAGAGGAGGGATGGGTGGTTTGCAGAATCTTCAAGAAGAAAAATCTTCACAAAACAATAGACAGCCCAATTTTGATTGCACCAACTTCATCTATCACAACAGATAATATTACAAGTATCTTTGTTAGTTCATGTGATTATAATGATGAGGAAACTTTGAAGCATATACTTGACTGCATGGGATCAAGGACCTGCAAGGAAGAAACTAATGAAGCAAACAACTCATTAATCATGAACCACATTCATGGGTTTCATGACGATGATGATAGGTTCTTGAATCTTCCTAGCCTAGAGAGCCCAAACTCGTCTGCAGAGAATGATGACCCGGTGGGTCATCAAAGCGTGGACTCGGTTGGCCTCACCAACTGGGCAGCGCTTGATCGTTTCGTGGCTGCACAACTCGATGGCAGTGAAACGATGACCTACCCGGAATCAGGGAACTGCTTCAGTACTGATCACCATGATTATCATGATCATGAGCTCCAATTACCAACTACTCTGAGATCATCGAATTCATGCAGCAACGAGATCGAGCTGTGGCCTACTTTTGCTCCACATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009900 GO:0009987 GO:0010047 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032504 GO:0042546 GO:0044085 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

304

Amino Acids

34.27

Weight (kDa)

5.6

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	24 - 99	3.2e-26	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46770
fragaria_vesca	FvH4_7g17540 FvH4_7g17550
malus_domestica	MD01G1088100.v1.1 MD01G1088300.v1.1 MD07G1158300.v1.1 MD08G1232800.v1.1
prunus_persica	Prupe.2G196600_v2.0.a1
pyrus_communis	pycom01g11190 pycom07g15480
rosa_chinensis	RchiOBHm_Chr1g0360971 RchiOBHm_Chr1g0361001
rosa_laevigata	RLG00000027761 RLG00000027763
rosa_multiflora	Rmu_co8429119.1_g000001 Rmu_sc0000677.1_g000011 Rmu_sc0000677.1_g000019
rosa_roxburghii	Rroxscaffold_4G00295590 Rroxscaffold_4G00295630
rosa_rugosa	Rorug01G0284100
rosa_samantha	Rh1AG295300 Rh1BG260200 Rh1BG260400 Rh1CG277500 Rh1CG277600 Rh1DG290200 Rh1DG290400
rosa_wichuraiana	Rw1G026130 Rw1G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	492
Acc36I	ACCTGC	1 cut(s)	551
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	3 cut(s)	218, 284, 541
AcoI	YGGCCR	2 cut(s)	175, 259
AcsI	RAATTY	1 cut(s)	862
AcuI	CTGAAG	2 cut(s)	82, 781
AfaI	GTAC	1 cut(s)	802
AfeI	AGCGCT	1 cut(s)	726
AfiI	CCNNNNNNNGG	3 cut(s)	162, 184, 785
AgsI	TTSAA	3 cut(s)	385, 511, 628
AluBI	AGCT	3 cut(s)	152, 832, 886
AluI	AGCT	3 cut(s)	152, 832, 886
Alw21I	GWGCWC	1 cut(s)	834
Alw26I	GTCTC	1 cut(s)	331
AlwI	GGATC	3 cut(s)	218, 284, 541
AlwNI	CAGNNNCTG	1 cut(s)	201
Aor51HI	AGCGCT	1 cut(s)	726
AoxI	GGCC	5 cut(s)	168, 175, 259, 706, 890
ApeKI	GCWGC	5 cut(s)	152, 195, 722, 743, 870
ApoI	RAATTY	1 cut(s)	862
AseI	ATTAAT	1 cut(s)	578
Asp700I	GAANNNNTTC	1 cut(s)	794
AspLEI	GCGC	1 cut(s)	727
AspS9I	GGNCC	1 cut(s)	540
AsuC2I	CCSGG	3 cut(s)	157, 677, 779
AsuHPI	GGTGA	3 cut(s)	199, 703, 800
AvaII	GGWCC	1 cut(s)	540
BalI	TGGCCA	1 cut(s)	261
BanII	GRGCYC	3 cut(s)	253, 650, 834
BauI	CACGAG	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	834
BbvI	GCAGC	5 cut(s)	139, 207, 730, 734, 882
BccI	CCATC	2 cut(s)	357, 749
BceAI	ACGGC	1 cut(s)	162
BcgI	CGANNNNNNTGC	4 cut(s)	193, 227, 862, 896
BciVI	GTATCC	1 cut(s)	129
BclI	TGATCA	2 cut(s)	805, 823
BcnI	CCSGG	3 cut(s)	157, 677, 779
BcoDI	GTCTC	1 cut(s)	331
BfaI	CTAG	3 cut(s)	309, 636, 641
BfmI	CTRYAG	1 cut(s)	660
BfoI	RGCGCY	1 cut(s)	728
BfuAI	ACCTGC	1 cut(s)	551
BfuI	GTATCC	1 cut(s)	129
BisI	GCNGC	5 cut(s)	153, 196, 723, 744, 871
BlsI	GCNGC	5 cut(s)	154, 197, 724, 745, 872
BmcAI	AGTACT	1 cut(s)	802
Bme1390I	CCNGG	3 cut(s)	157, 677, 779
Bme18I	GGWCC	1 cut(s)	540
BmgT120I	GGNCC	1 cut(s)	540
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	3 cut(s)	157, 677, 779
BmrI	ACTGGG	1 cut(s)	727
BmsI	GCATC	1 cut(s)	356
BmuI	ACTGGG	1 cut(s)	727
BplI	GAGNNNNNCTC	2 cut(s)	211, 243
BpmI	CTGGAG	1 cut(s)	33
BpuEI	CTTGAG	2 cut(s)	24, 336
BpuMI	CCSGG	3 cut(s)	157, 677, 779
BsaJI	CCNNGG	1 cut(s)	256
BsaWI	WCCGGW	1 cut(s)	125
BsaXI	ACNNNNNCTCC	1 cut(s)	886
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 184, 785
Bse1I	ACTGG	2 cut(s)	178, 722
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	368
BseLI	CCNNNNNNNGG	3 cut(s)	162, 184, 785
BseMII	CTCAG	1 cut(s)	842
BseNI	ACTGG	2 cut(s)	178, 722
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	5 cut(s)	139, 207, 730, 734, 882
BsgI	GTGCAG	1 cut(s)	729
BshFI	GGCC	5 cut(s)	170, 177, 261, 708, 892
BsiHKAI	GWGCWC	1 cut(s)	834
BsiSI	CCGG	4 cut(s)	126, 156, 677, 779
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	3 cut(s)	162, 184, 785
BsmAI	GTCTC	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	5 cut(s)	170, 177, 261, 708, 892
Bsp1286I	GDGCHC	3 cut(s)	253, 650, 834
Bsp143I	GATC	8 cut(s)	210, 276, 533, 730, 805, 823, 854, 879
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	5 cut(s)	170, 177, 261, 708, 892
BspCNI	CTCAG	1 cut(s)	843
BspHI	TCATGA	4 cut(s)	582, 604, 820, 826
BspLI	GGNNCC	1 cut(s)	70
BspMAI	CTGCAG	1 cut(s)	664
BspMI	ACCTGC	1 cut(s)	551
BspPI	GGATC	3 cut(s)	218, 284, 541
BspQI	GCTCTTC	1 cut(s)	241
BsrI	ACTGG	2 cut(s)	178, 722
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	8 cut(s)	210, 276, 533, 730, 805, 823, 854, 879
BssSI	CACGAG	1 cut(s)	284
Bst2BI	CACGAG	1 cut(s)	284
Bst6I	CTCTTC	1 cut(s)	241
BstAPI	GCANNNNNTGC	2 cut(s)	152, 201
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	851
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	368
BstH2I	RGCGCY	1 cut(s)	728
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	8 cut(s)	213, 279, 536, 733, 808, 826, 857, 882
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	8 cut(s)	210, 276, 533, 730, 805, 823, 854, 879
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 201, 645
BstSCI	CCNGG	3 cut(s)	155, 675, 777
BstSFI	CTRYAG	1 cut(s)	660
BstV1I	GCAGC	5 cut(s)	139, 207, 730, 734, 882
BstXI	CCANNNNNNTGG	1 cut(s)	596
BsuI	GTATCC	1 cut(s)	129
BsuRI	GGCC	5 cut(s)	170, 177, 261, 708, 892
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	368
BtsI	GCAGTG	1 cut(s)	766
BtsIMutI	CAGTG	3 cut(s)	171, 318, 766
BveI	ACCTGC	1 cut(s)	551
Cac8I	GCNNGC	1 cut(s)	206
CaiI	CAGNNNCTG	1 cut(s)	201
CciI	TCATGA	4 cut(s)	582, 604, 820, 826
CfoI	GCGC	1 cut(s)	727
Cfr13I	GGNCC	1 cut(s)	540
Csp6I	GTAC	1 cut(s)	801
CviQI	GTAC	1 cut(s)	801
DdeI	CTNAG	1 cut(s)	851
DpnI	GATC	8 cut(s)	212, 278, 535, 732, 807, 825, 856, 881
DpnII	GATC	8 cut(s)	210, 276, 533, 730, 805, 823, 854, 879
EaeI	YGGCCR	2 cut(s)	175, 259
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
Ecl136II	GAGCTC	1 cut(s)	832
Eco24I	GRGCYC	3 cut(s)	253, 650, 834
Eco47I	GGWCC	1 cut(s)	540
Eco47III	AGCGCT	1 cut(s)	726
Eco53kI	GAGCTC	1 cut(s)	832
Eco57I	CTGAAG	2 cut(s)	82, 781
EcoICRI	GAGCTC	1 cut(s)	832
EcoO109I	RGGNCCY	1 cut(s)	540
EcoRI	GAATTC	1 cut(s)	862
EcoT38I	GRGCYC	3 cut(s)	253, 650, 834
FaqI	GGGAC	1 cut(s)	29
FbaI	TGATCA	2 cut(s)	805, 823
Fnu4HI	GCNGC	5 cut(s)	153, 196, 723, 744, 871
FokI	GGATG	1 cut(s)	375
FriOI	GRGCYC	3 cut(s)	253, 650, 834
Fsp4HI	GCNGC	5 cut(s)	153, 196, 723, 744, 871
FspBI	CTAG	3 cut(s)	309, 636, 641
GlaI	GCGC	1 cut(s)	726
GluI	GCNGC	5 cut(s)	153, 196, 723, 744, 871
GsuI	CTGGAG	1 cut(s)	33
HaeII	RGCGCY	1 cut(s)	728
HaeIII	GGCC	5 cut(s)	170, 177, 261, 708, 892
HapII	CCGG	4 cut(s)	126, 156, 677, 779
HhaI	GCGC	1 cut(s)	727
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HinfI	GANTC	6 cut(s)	294, 315, 378, 628, 698, 782
HpaII	CCGG	4 cut(s)	126, 156, 677, 779
HphI	GGTGA	3 cut(s)	199, 703, 800
Hpy166II	GTNNAC	2 cut(s)	28, 697
Hpy188I	TCNGA	2 cut(s)	271, 852
Hpy188III	TCNNGA	9 cut(s)	50, 163, 353, 385, 583, 605, 625, 821, 827
Hpy8I	GTNNAC	2 cut(s)	28, 697
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 201, 645
HpyF3I	CTNAG	1 cut(s)	851
HspAI	GCGC	1 cut(s)	725
Ksp22I	TGATCA	2 cut(s)	805, 823
Kzo9I	GATC	8 cut(s)	210, 276, 533, 730, 805, 823, 854, 879
LguI	GCTCTTC	1 cut(s)	241
LmnI	GCTCC	2 cut(s)	837, 907
Lsp1109I	GCAGC	5 cut(s)	139, 207, 730, 734, 882
LweI	GCATC	1 cut(s)	356
MaeI	CTAG	3 cut(s)	309, 636, 641
MalI	GATC	8 cut(s)	212, 278, 535, 732, 807, 825, 856, 881
MboI	GATC	8 cut(s)	210, 276, 533, 730, 805, 823, 854, 879
MboII	GAAGA	7 cut(s)	88, 258, 373, 389, 400, 563, 623
MhlI	GDGCHC	3 cut(s)	253, 650, 834
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	3 cut(s)	420, 836, 862
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	2 cut(s)	288, 692
MnlI	CCTC	7 cut(s)	57, 213, 337, 349, 352, 493, 719
Mox20I	TGGCCA	1 cut(s)	261
MroXI	GAANNNNTTC	1 cut(s)	794
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	1 cut(s)	578
MslI	CAYNNNNRTG	4 cut(s)	594, 609, 825, 910
Msp20I	TGGCCA	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	4 cut(s)	126, 156, 677, 779
MspR9I	CCNGG	3 cut(s)	157, 677, 779
MwoI	GCNNNNNNNGC	3 cut(s)	152, 201, 645
NciI	CCSGG	3 cut(s)	157, 677, 779
NdeII	GATC	8 cut(s)	210, 276, 533, 730, 805, 823, 854, 879
NlaIV	GGNNCC	1 cut(s)	70
PagI	TCATGA	4 cut(s)	582, 604, 820, 826
PciSI	GCTCTTC	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	794
PfeI	GAWTC	4 cut(s)	315, 378, 628, 782
PkrI	GCNGC	5 cut(s)	154, 197, 724, 745, 872
PleI	GAGTC	2 cut(s)	288, 692
PpsI	GAGTC	2 cut(s)	288, 692
PpuMI	RGGWCCY	1 cut(s)	540
PshBI	ATTAAT	1 cut(s)	578
PsiI	TTATAA	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	834
Psp5II	RGGWCCY	1 cut(s)	540
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	540
PspPPI	RGGWCCY	1 cut(s)	540
PstI	CTGCAG	1 cut(s)	664
PstNI	CAGNNNCTG	1 cut(s)	201
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	1 cut(s)	802
RsaNI	GTAC	1 cut(s)	801
RseI	CAYNNNNRTG	4 cut(s)	594, 609, 825, 910
SacI	GAGCTC	1 cut(s)	834
SapI	GCTCTTC	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	578
SatI	GCNGC	5 cut(s)	153, 196, 723, 744, 871
Sau3AI	GATC	8 cut(s)	210, 276, 533, 730, 805, 823, 854, 879
Sau96I	GGNCC	1 cut(s)	540
ScaI	AGTACT	1 cut(s)	802
SchI	GAGTC	2 cut(s)	288, 692
ScrFI	CCNGG	3 cut(s)	157, 677, 779
SduI	GDGCHC	3 cut(s)	253, 650, 834
SetI	ASST	7 cut(s)	154, 189, 545, 623, 776, 834, 888
SfaNI	GCATC	1 cut(s)	356
SfcI	CTRYAG	1 cut(s)	660
SinI	GGWCC	1 cut(s)	540
SmiMI	CAYNNNNRTG	4 cut(s)	594, 609, 825, 910
SmlI	CTYRAG	2 cut(s)	39, 351
SmoI	CTYRAG	2 cut(s)	39, 351
Sse9I	AATT	3 cut(s)	420, 836, 862
SsiI	CCGC	1 cut(s)	208
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	3 cut(s)	309, 636, 641
SstI	GAGCTC	1 cut(s)	834
StyD4I	CCNGG	3 cut(s)	155, 675, 777
TaqI	TCGA	4 cut(s)	297, 753, 860, 882
TasI	AATT	3 cut(s)	420, 836, 862
TatI	WGTACW	1 cut(s)	800
TfiI	GAWTC	4 cut(s)	315, 378, 628, 782
Tru1I	TTAA	1 cut(s)	578
Tru9I	TTAA	1 cut(s)	578
TscAI	CASTG	3 cut(s)	178, 325, 766
TseI	GCWGC	5 cut(s)	152, 195, 722, 743, 870
TspDTI	ATGAA	7 cut(s)	429, 471, 576, 584, 593, 599, 855
TspGWI	ACGGA	1 cut(s)	319
TspRI	CASTG	3 cut(s)	178, 325, 766
VpaK11BI	GGWCC	1 cut(s)	540
VspI	ATTAAT	1 cut(s)	578
XapI	RAATTY	1 cut(s)	862
XcmI	CCANNNNNNNNNTGG	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	794
XspI	CTAG	3 cut(s)	309, 636, 641
ZrmI	AGTACT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.